Wall clock time and date at job start Tue Mar 31 2020 09:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99774 * 2 1 4 4 H 1.48502 * 109.46902 * 269.99788 * 3 2 1 5 5 H 1.48497 * 109.47576 * 30.00000 * 3 2 1 6 6 H 1.48507 * 109.47290 * 150.00084 * 3 2 1 7 7 C 1.37871 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00440 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00027 * 0.02562 * 7 2 1 10 10 C 1.53001 * 109.47334 * 179.97438 * 9 7 2 11 11 O 1.45198 * 109.47401 * 179.97438 * 10 9 7 12 12 C 1.34740 * 117.00059 * 180.02562 * 11 10 9 13 13 O 1.21500 * 119.99892 * 0.02562 * 12 11 10 14 14 C 1.47519 * 120.00013 * 180.02562 * 12 11 10 15 15 C 1.39758 * 120.12792 * 359.97438 * 14 12 11 16 16 C 1.37865 * 119.87138 * 180.02562 * 15 14 12 17 17 Cl 1.73595 * 119.92903 * 180.02562 * 16 15 14 18 18 C 1.38827 * 120.13757 * 0.02562 * 16 15 14 19 19 F 1.35097 * 119.86911 * 179.97438 * 18 16 15 20 20 C 1.38542 * 120.26470 * 0.02562 * 18 16 15 21 21 C 1.38033 * 120.12591 * 359.97438 * 20 18 16 22 22 Cl 1.73600 * 120.06914 * 180.02562 * 21 20 18 23 23 H 0.96995 * 120.00250 * 359.97438 * 1 2 3 24 24 H 1.08998 * 109.47260 * 59.99637 * 9 7 2 25 25 H 1.09003 * 109.47103 * 299.99061 * 9 7 2 26 26 H 1.09011 * 109.47227 * 59.99901 * 10 9 7 27 27 H 1.09000 * 109.47118 * 300.00215 * 10 9 7 28 28 H 1.08005 * 120.06469 * 0.30467 * 15 14 12 29 29 H 1.07998 * 119.93926 * 179.97438 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4403 0.7000 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2453 -3.6621 0.0005 11 8 1.5194 -4.9196 0.0011 12 6 2.2533 -6.0496 0.0018 13 8 3.4666 -5.9859 0.0023 14 6 1.5836 -7.3640 0.0018 15 6 0.1881 -7.4403 0.0018 16 6 -0.4323 -8.6715 0.0024 17 17 -2.1655 -8.7680 0.0017 18 6 0.3263 -9.8342 0.0036 19 9 -0.2872 -11.0378 0.0047 20 6 1.7100 -9.7651 0.0047 21 6 2.3424 -8.5382 0.0041 22 17 4.0764 -8.4534 0.0048 23 1 -0.4850 0.8400 0.0004 24 1 0.6247 -2.5571 -0.8896 25 1 0.6242 -2.5568 0.8904 26 1 2.8720 -3.6043 0.8906 27 1 2.8720 -3.6043 -0.8894 28 1 -0.4032 -6.5365 -0.0032 29 1 2.2950 -10.6730 0.0060 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815504615.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:12:31 Heat of formation + Delta-G solvation = -119.011791 kcal Electronic energy + Delta-G solvation = -19391.428049 eV Core-core repulsion = 15667.171796 eV Total energy + Delta-G solvation = -3724.256254 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 306.001 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -49.55632 -40.51004 -39.01288 -37.19337 -36.56436 -36.14046 -33.41238 -31.87519 -31.05192 -30.16839 -25.55582 -24.28194 -23.62368 -21.45566 -20.76081 -18.62703 -18.01915 -17.25212 -16.63004 -16.42208 -16.01831 -15.94935 -15.72789 -14.69482 -14.53576 -14.22249 -13.98719 -13.93176 -13.15090 -12.81004 -12.74235 -12.41032 -12.24479 -11.68080 -11.35537 -11.31373 -11.24540 -11.11451 -10.80975 -10.70530 -10.08818 -9.74123 -9.66637 -9.59433 -9.34667 -9.11376 -8.47919 -6.14021 -4.18570 -0.05540 0.36330 1.45112 1.67923 2.20165 2.82902 3.12068 3.26561 3.32953 3.36732 3.44109 3.98092 4.32173 4.37345 4.53853 4.84435 4.88444 5.22856 5.23079 5.29954 5.50940 5.85924 5.99684 6.02352 6.56219 6.78869 7.49326 7.56458 7.80555 8.01256 8.19008 8.86816 9.46167 10.97388 Molecular weight = 306.00amu Principal moments of inertia in cm(-1) A = 0.018051 B = 0.003404 C = 0.002870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1550.774857 B = 8223.611287 C = 9753.939012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.061 3.939 3 Si 0.900 3.100 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.272 1.272 7 C -0.527 4.527 8 H 0.060 0.940 9 C 0.025 3.975 10 C 0.077 3.923 11 O -0.351 6.351 12 C 0.497 3.503 13 O -0.486 6.486 14 C -0.109 4.109 15 C -0.011 4.011 16 C -0.088 4.088 17 Cl -0.031 7.031 18 C 0.152 3.848 19 F -0.114 7.114 20 C -0.150 4.150 21 C 0.043 3.957 22 Cl -0.005 7.005 23 H 0.264 0.736 24 H 0.029 0.971 25 H 0.029 0.971 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.173 0.827 29 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.091 -21.885 0.006 21.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.013 4.013 10 C 0.005 3.995 11 O -0.267 6.267 12 C 0.340 3.660 13 O -0.374 6.374 14 C -0.112 4.112 15 C -0.030 4.030 16 C -0.116 4.116 17 Cl -0.002 7.002 18 C 0.131 3.869 19 F -0.092 7.092 20 C -0.170 4.170 21 C 0.015 3.985 22 Cl 0.025 6.975 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.047 0.953 26 H 0.080 0.920 27 H 0.080 0.920 28 H 0.191 0.809 29 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 0.097 -21.731 0.011 21.732 hybrid contribution 0.366 0.705 -0.011 0.795 sum 0.463 -21.026 0.000 21.031 Atomic orbital electron populations 1.69964 1.06083 1.27052 1.49663 1.24977 0.94925 0.99405 0.94823 0.86469 0.79771 0.82798 0.78264 1.20468 1.21041 1.19709 1.20957 0.93194 0.90024 1.52336 0.92209 1.19187 0.94190 0.88924 0.98958 1.23744 0.96464 0.77998 1.01286 1.86558 1.41971 1.15533 1.82643 1.20535 0.85785 0.85085 0.74600 1.90918 1.14148 1.87941 1.44432 1.19085 0.92737 0.91304 1.08063 1.21412 0.92919 0.97407 0.91287 1.20934 0.87224 0.93583 1.09816 1.98423 1.06419 1.98536 1.96806 1.17368 0.89850 0.80003 0.99631 1.91593 1.82804 1.41788 1.93046 1.20871 0.92059 0.98364 1.05687 1.20797 0.87877 0.92373 0.97404 1.98462 1.05057 1.98469 1.95560 0.92671 0.95280 0.95260 0.91970 0.91965 0.80941 0.81861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.83 13.29 55.43 0.74 -25.09 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.90 21.06 29.54 -169.99 -5.02 16.04 15 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 15 5 H -0.28 -6.59 7.11 56.52 0.40 -6.19 15 6 H -0.27 -6.26 7.11 56.52 0.40 -5.86 15 7 C -0.53 -14.43 9.11 -34.44 -0.31 -14.75 15 8 H 0.06 1.59 7.74 -52.49 -0.41 1.18 15 9 C 0.02 0.62 5.35 -27.88 -0.15 0.47 15 10 C 0.08 1.63 5.41 37.16 0.20 1.83 15 11 O -0.35 -6.51 9.47 -40.60 -0.38 -6.89 15 12 C 0.50 8.24 7.89 34.51 0.27 8.51 15 13 O -0.49 -8.88 13.75 -19.27 -0.26 -9.14 15 14 C -0.11 -1.42 5.88 -104.96 -0.62 -2.04 15 15 C -0.01 -0.13 9.39 -39.15 -0.37 -0.50 15 16 C -0.09 -0.90 6.32 -39.50 -0.25 -1.15 15 17 Cl -0.03 -0.31 28.60 -51.86 -1.48 -1.79 15 18 C 0.15 1.45 7.28 -39.25 -0.29 1.16 15 19 F -0.11 -1.07 16.82 2.25 0.04 -1.04 15 20 C -0.15 -1.33 9.79 -39.54 -0.39 -1.72 15 21 C 0.04 0.49 6.35 -39.07 -0.25 0.24 15 22 Cl -0.01 -0.06 26.02 -51.86 -1.35 -1.41 15 23 H 0.26 7.20 8.31 -40.82 -0.34 6.86 15 24 H 0.03 0.76 8.14 -51.93 -0.42 0.34 15 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 26 H 0.06 1.30 8.14 -51.92 -0.42 0.87 15 27 H 0.06 1.30 8.14 -51.93 -0.42 0.87 15 28 H 0.17 1.92 7.61 -52.48 -0.40 1.52 15 29 H 0.16 1.02 8.06 -52.49 -0.42 0.60 15 LS Contribution 301.31 15.07 4.54 4.54 Total: -1.00 -29.13 301.31 -7.48 -36.62 By element: Atomic # 1 Polarization: -3.43 SS G_CDS: -2.05 Total: -5.48 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.24 Total: -6.34 kcal Atomic # 7 Polarization: -25.83 SS G_CDS: 0.74 Total: -25.09 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.65 Total: -16.04 kcal Atomic # 9 Polarization: -1.07 SS G_CDS: 0.04 Total: -1.04 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.04 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -2.83 Total: -3.21 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -29.13 -7.48 -36.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815504615.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.396 kcal (2) G-P(sol) polarization free energy of solvation -29.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds