Wall clock time and date at job start Tue Mar 31 2020 08:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47188 * 2 1 4 4 C 1.52997 * 109.46948 * 119.99754 * 2 1 3 5 5 C 1.53006 * 109.47129 * 175.11031 * 4 2 1 6 6 N 1.46902 * 109.46929 * 182.53250 * 5 4 2 7 7 C 1.46904 * 110.99663 * 196.26067 * 6 5 4 8 8 C 1.50698 * 109.47057 * 66.04965 * 7 6 5 9 9 H 1.07997 * 119.99981 * 359.97438 * 8 7 6 10 10 C 1.37877 * 120.00140 * 179.97438 * 8 7 6 11 11 N 1.31518 * 119.99651 * 359.97438 * 10 8 7 12 12 Si 1.86798 * 120.00192 * 179.97438 * 10 8 7 13 13 H 1.48498 * 109.47053 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.46965 * 119.99764 * 12 10 8 15 15 H 1.48493 * 109.47087 * 240.00003 * 12 10 8 16 16 C 1.46906 * 111.00116 * 72.31111 * 6 5 4 17 17 C 1.50693 * 109.47422 * 199.68589 * 16 6 5 18 18 C 1.39864 * 126.04176 * 272.14315 * 17 16 6 19 19 N 1.30842 * 108.20135 * 179.81512 * 18 17 16 20 20 N 1.40078 * 108.20648 * 0.43497 * 19 18 17 21 21 C 1.46504 * 126.03807 * 179.73816 * 20 19 18 22 22 C 1.53777 * 113.61450 * 192.42211 * 21 20 19 23 23 C 1.53956 * 87.02051 * 220.04898 * 22 21 20 24 24 C 1.53776 * 113.61264 * 94.81726 * 21 20 19 25 25 C 1.34951 * 107.92554 * 359.72247 * 20 19 18 26 26 H 1.08996 * 109.47196 * 304.82268 * 1 2 3 27 27 H 1.09001 * 109.47172 * 64.82262 * 1 2 3 28 28 H 1.08996 * 109.47355 * 184.82027 * 1 2 3 29 29 H 1.09003 * 109.47321 * 239.99832 * 2 1 3 30 30 H 1.09003 * 109.47126 * 59.99713 * 3 2 1 31 31 H 1.08996 * 109.47304 * 179.97438 * 3 2 1 32 32 H 1.08998 * 109.47270 * 299.99704 * 3 2 1 33 33 H 1.09003 * 109.47592 * 55.10933 * 4 2 1 34 34 H 1.09004 * 109.47243 * 295.11102 * 4 2 1 35 35 H 1.08993 * 109.47077 * 62.53065 * 5 4 2 36 36 H 1.09001 * 109.46662 * 302.53374 * 5 4 2 37 37 H 1.09002 * 109.47072 * 306.04475 * 7 6 5 38 38 H 1.09000 * 109.46539 * 186.04799 * 7 6 5 39 39 H 0.97003 * 119.99735 * 179.97438 * 11 10 8 40 40 H 1.09000 * 109.46733 * 319.69125 * 16 6 5 41 41 H 1.09000 * 109.47023 * 79.68357 * 16 6 5 42 42 H 1.07995 * 125.89956 * 359.97438 * 18 17 16 43 43 H 1.08995 * 112.84968 * 323.62088 * 21 20 19 44 44 H 1.09006 * 113.61558 * 334.57193 * 22 21 20 45 45 H 1.08999 * 113.61278 * 105.47130 * 22 21 20 46 46 H 1.08999 * 113.53560 * 270.80774 * 23 22 21 47 47 H 1.09006 * 113.74094 * 139.94353 * 23 22 21 48 48 H 1.09004 * 113.61588 * 254.53196 * 24 21 20 49 49 H 1.09001 * 113.61919 * 25.43126 * 24 21 20 50 50 H 1.07995 * 126.12530 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5650 -0.8286 1.1893 6 7 4.0497 -1.5741 2.3587 7 6 5.4926 -1.3746 2.5491 8 6 5.7577 0.0652 2.9067 9 1 4.9366 0.7623 2.9843 10 6 7.0486 0.4924 3.1348 11 7 8.0486 -0.3568 3.0408 12 14 7.3774 2.2771 3.5774 13 1 6.0932 3.0216 3.6182 14 1 8.0317 2.3445 4.9089 15 1 8.2687 2.8842 2.5566 16 6 3.7265 -3.0025 2.2434 17 6 3.7844 -3.6423 3.6065 18 6 4.9208 -4.1894 4.2111 19 7 4.5780 -4.6446 5.3890 20 7 3.2086 -4.4101 5.5672 21 6 2.4190 -4.7698 6.7477 22 6 0.9007 -4.6600 6.5302 23 6 0.8201 -4.0764 7.9525 24 6 2.2788 -3.6265 7.7666 25 6 2.7450 -3.7942 4.4596 26 1 -0.3633 0.5868 0.8436 27 1 -0.3633 0.4372 -0.9300 28 1 -0.3634 -1.0240 0.0864 29 1 1.8933 -0.5139 -0.8900 30 1 1.6766 1.9564 0.8900 31 1 3.1299 1.4425 0.0005 32 1 1.6767 1.9563 -0.8900 33 1 1.6068 -1.7205 1.2943 34 1 1.7498 -0.1592 2.1371 35 1 3.9999 0.1708 1.1898 36 1 3.8568 -1.3514 0.2785 37 1 6.0185 -1.6228 1.6272 38 1 5.8454 -2.0197 3.3537 39 1 8.9568 -0.0561 3.2009 40 1 2.7239 -3.1159 1.8311 41 1 4.4473 -3.4860 1.5841 42 1 5.9108 -4.2271 3.7812 43 1 2.7292 -5.7153 7.1924 44 1 0.6214 -3.9509 5.7508 45 1 0.4040 -5.6244 6.4241 46 1 0.6917 -4.8328 8.7267 47 1 0.1168 -3.2491 8.0483 48 1 2.8931 -3.7578 8.6574 49 1 2.3770 -2.6344 7.3260 50 1 1.7270 -3.4786 4.2854 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891937439.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:46 Heat of formation + Delta-G solvation = 85.181295 kcal Electronic energy + Delta-G solvation = -25686.299145 eV Core-core repulsion = 22329.425149 eV Total energy + Delta-G solvation = -3356.873996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.96115 -38.51361 -37.37192 -35.29279 -32.53315 -31.32795 -30.34486 -28.69860 -27.12807 -26.80639 -25.90547 -25.32476 -23.84640 -22.61400 -21.15651 -20.36095 -19.70572 -19.47655 -19.00011 -17.03816 -16.25090 -15.81425 -15.22462 -14.78674 -14.56619 -14.21123 -14.12608 -13.96098 -13.74419 -13.32954 -13.16457 -12.80955 -12.67816 -12.40397 -12.18734 -12.12823 -11.93292 -11.73085 -11.56038 -11.46495 -11.36948 -11.08405 -10.89559 -10.80913 -10.72674 -10.64766 -10.60219 -10.33980 -10.18997 -10.00677 -9.87597 -9.54921 -9.07820 -8.87313 -8.34727 -7.86541 -7.07369 -5.94679 -3.94257 2.34040 2.86055 3.34409 3.35551 3.42319 3.46817 4.14517 4.31687 4.49731 4.59975 4.60172 4.96879 5.07438 5.15107 5.23029 5.23472 5.38014 5.40638 5.46146 5.47861 5.52319 5.61818 5.71116 5.73317 5.79952 5.80775 5.87513 5.94875 5.97771 6.04691 6.08980 6.12264 6.14966 6.26171 6.28857 6.34549 6.49396 6.50570 6.52253 6.72171 6.84713 6.94696 7.17863 7.44855 7.47079 7.51110 7.90597 8.20599 8.24174 8.37254 8.68191 9.13715 9.69053 11.16299 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.008482 B = 0.004871 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3300.385282 B = 5746.849764 C = 7726.221353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.149 4.149 4 C -0.108 4.108 5 C 0.061 3.939 6 N -0.532 5.532 7 C 0.193 3.807 8 C -0.501 4.501 9 H 0.061 0.939 10 C 0.055 3.945 11 N -0.898 5.898 12 Si 0.892 3.108 13 H -0.273 1.273 14 H -0.285 1.285 15 H -0.286 1.286 16 C 0.128 3.872 17 C -0.204 4.204 18 C 0.066 3.934 19 N -0.306 5.306 20 N -0.371 5.371 21 C 0.142 3.858 22 C -0.145 4.145 23 C -0.138 4.138 24 C -0.149 4.149 25 C 0.059 3.941 26 H 0.052 0.948 27 H 0.048 0.952 28 H 0.050 0.950 29 H 0.064 0.936 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.045 0.955 33 H 0.052 0.948 34 H 0.065 0.935 35 H 0.087 0.913 36 H 0.015 0.985 37 H -0.013 1.013 38 H 0.037 0.963 39 H 0.259 0.741 40 H 0.063 0.937 41 H 0.031 0.969 42 H 0.179 0.821 43 H 0.115 0.885 44 H 0.093 0.907 45 H 0.079 0.921 46 H 0.085 0.915 47 H 0.078 0.922 48 H 0.076 0.924 49 H 0.092 0.908 50 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.789 -6.862 1.762 18.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.115 4.115 3 C -0.206 4.206 4 C -0.146 4.146 5 C -0.067 4.067 6 N -0.256 5.256 7 C 0.068 3.932 8 C -0.540 4.540 9 H 0.080 0.920 10 C -0.146 4.146 11 N -0.538 5.538 12 Si 0.720 3.280 13 H -0.197 1.197 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.001 4.001 17 C -0.216 4.216 18 C -0.121 4.121 19 N -0.127 5.127 20 N -0.154 5.154 21 C 0.039 3.961 22 C -0.184 4.184 23 C -0.176 4.176 24 C -0.188 4.188 25 C -0.087 4.087 26 H 0.071 0.929 27 H 0.067 0.933 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.072 0.928 31 H 0.082 0.918 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.105 0.895 36 H 0.033 0.967 37 H 0.005 0.995 38 H 0.055 0.945 39 H 0.069 0.931 40 H 0.082 0.918 41 H 0.049 0.951 42 H 0.196 0.804 43 H 0.133 0.867 44 H 0.112 0.888 45 H 0.098 0.902 46 H 0.103 0.897 47 H 0.096 0.904 48 H 0.095 0.905 49 H 0.110 0.890 50 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -16.492 -7.306 3.376 18.351 hybrid contribution 0.598 1.135 -1.124 1.705 sum -15.894 -6.172 2.252 17.198 Atomic orbital electron populations 1.21826 0.95933 1.01223 1.01142 1.21101 0.94923 0.96674 0.98837 1.21881 1.02037 0.95751 1.00912 1.21668 0.96492 0.99429 0.96982 1.22054 0.93589 1.00173 0.90889 1.62109 1.19861 1.05729 1.37949 1.19746 0.80440 0.97415 0.95628 1.21205 0.92143 0.94666 1.45955 0.92036 1.24956 0.96268 0.97451 0.95892 1.69965 0.99182 1.34230 1.50432 0.86539 0.78186 0.85328 0.77963 1.19738 1.21154 1.21198 1.20279 0.99422 0.89610 0.90830 1.19967 0.92490 1.09005 1.00090 1.23819 0.99653 0.96908 0.91702 1.77274 0.90895 1.25453 1.19030 1.48457 1.06624 1.46703 1.13616 1.22776 0.89516 0.99405 0.84397 1.23415 0.93763 1.02548 0.98625 1.22728 0.97187 1.01228 0.96420 1.23446 0.96586 0.99394 0.99330 1.21982 0.99852 0.99175 0.87645 0.92895 0.93317 0.93085 0.91761 0.92808 0.91787 0.93598 0.92898 0.91667 0.89505 0.96690 0.99544 0.94539 0.93145 0.91838 0.95126 0.80447 0.86740 0.88833 0.90238 0.89653 0.90351 0.90517 0.88989 0.81906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 2 C -0.10 -1.25 2.92 -90.62 -0.26 -1.51 16 3 C -0.15 -1.98 8.95 37.16 0.33 -1.65 16 4 C -0.11 -1.63 4.79 -26.73 -0.13 -1.76 16 5 C 0.06 1.15 4.49 -3.82 -0.02 1.14 16 6 N -0.53 -11.28 4.37 -237.51 -1.04 -12.32 16 7 C 0.19 5.00 4.55 -4.97 -0.02 4.98 16 8 C -0.50 -14.11 8.28 -34.44 -0.29 -14.40 16 9 H 0.06 1.73 7.26 -52.49 -0.38 1.35 16 10 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 11 N -0.90 -26.95 13.29 55.43 0.74 -26.22 16 12 Si 0.89 21.99 29.54 -169.99 -5.02 16.97 16 13 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 16 C 0.13 2.32 5.31 -4.98 -0.03 2.29 16 17 C -0.20 -3.70 5.28 -105.06 -0.55 -4.26 16 18 C 0.07 1.27 10.65 -17.36 -0.18 1.09 16 19 N -0.31 -5.83 12.58 30.62 0.39 -5.45 16 20 N -0.37 -5.89 3.81 -54.08 -0.21 -6.09 16 21 C 0.14 1.65 5.03 -67.12 -0.34 1.31 16 22 C -0.14 -1.24 7.44 -25.83 -0.19 -1.44 16 23 C -0.14 -1.07 8.09 -25.83 -0.21 -1.28 16 24 C -0.15 -1.61 7.88 -25.92 -0.20 -1.82 16 25 C 0.06 0.93 10.60 -17.22 -0.18 0.75 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.96 6.62 -51.93 -0.34 0.61 16 32 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.75 6.49 -51.93 -0.34 0.41 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 35 H 0.09 1.83 5.13 -51.93 -0.27 1.57 16 36 H 0.01 0.28 8.05 -51.93 -0.42 -0.14 16 37 H -0.01 -0.37 8.12 -51.93 -0.42 -0.79 16 38 H 0.04 1.02 6.17 -51.93 -0.32 0.70 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 40 H 0.06 1.00 6.24 -51.93 -0.32 0.67 16 41 H 0.03 0.57 8.00 -51.93 -0.42 0.16 16 42 H 0.18 3.40 7.87 -52.49 -0.41 2.98 16 43 H 0.11 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.09 0.82 6.32 -51.93 -0.33 0.49 16 45 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 46 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 47 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 48 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 49 H 0.09 1.18 8.14 -51.93 -0.42 0.76 16 50 H 0.16 2.08 6.68 -52.49 -0.35 1.72 16 LS Contribution 390.90 15.07 5.89 5.89 Total: -1.00 -31.80 390.90 -10.23 -42.03 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -8.95 Total: 1.47 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -2.03 Total: -16.28 kcal Atomic # 7 Polarization: -49.95 SS G_CDS: -0.12 Total: -50.08 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.80 -10.23 -42.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891937439.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.214 kcal (2) G-P(sol) polarization free energy of solvation -31.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds