Wall clock time and date at job start Tue Mar 31 2020 08:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30844 * 125.89878 * 2 1 4 4 N 1.40085 * 108.20090 * 179.81415 * 3 2 1 5 5 C 1.46497 * 126.03289 * 180.23440 * 4 3 2 6 6 C 1.53009 * 109.47284 * 300.15681 * 5 4 3 7 7 C 1.53002 * 109.47278 * 60.15923 * 5 4 3 8 8 C 1.34947 * 107.92649 * 0.37230 * 4 3 2 9 9 C 1.50705 * 126.12450 * 179.90205 * 8 4 3 10 10 C 1.35315 * 107.74816 * 359.63784 * 8 4 3 11 11 C 1.50692 * 126.03939 * 180.25417 * 10 8 4 12 12 N 1.46897 * 109.47436 * 89.99685 * 11 10 8 13 13 C 1.46848 * 111.00268 * 45.79036 * 12 11 10 14 14 C 1.53034 * 109.52935 * 185.83889 * 13 12 11 15 15 C 1.53113 * 109.27824 * 300.82343 * 14 13 12 16 16 C 1.50702 * 109.52355 * 177.55647 * 15 14 13 17 17 H 1.07994 * 120.00027 * 275.44844 * 16 15 14 18 18 C 1.37880 * 120.00003 * 95.44923 * 16 15 14 19 19 N 1.31508 * 119.99864 * 185.94045 * 18 16 15 20 20 Si 1.86803 * 119.99834 * 5.94352 * 18 16 15 21 21 H 1.48498 * 109.47600 * 84.77666 * 20 18 16 22 22 H 1.48507 * 109.46737 * 204.78088 * 20 18 16 23 23 H 1.48500 * 109.47203 * 324.77582 * 20 18 16 24 24 C 1.53120 * 109.16583 * 57.65138 * 15 14 13 25 25 C 1.46847 * 111.00098 * 169.99904 * 12 11 10 26 26 H 1.08991 * 109.47123 * 269.95411 * 1 2 3 27 27 H 1.09008 * 109.47155 * 29.95806 * 1 2 3 28 28 H 1.09005 * 109.47475 * 149.95149 * 1 2 3 29 29 H 1.09004 * 109.47312 * 180.15839 * 5 4 3 30 30 H 1.08997 * 109.46784 * 60.00253 * 6 5 4 31 31 H 1.09000 * 109.46564 * 180.02562 * 6 5 4 32 32 H 1.08997 * 109.46923 * 299.99781 * 6 5 4 33 33 H 1.09001 * 109.46532 * 299.99805 * 7 5 4 34 34 H 1.08995 * 109.46903 * 59.99395 * 7 5 4 35 35 H 1.08996 * 109.46994 * 179.97438 * 7 5 4 36 36 H 1.08993 * 109.46853 * 269.68658 * 9 8 4 37 37 H 1.09003 * 109.47203 * 149.68300 * 9 8 4 38 38 H 1.09001 * 109.46814 * 29.69055 * 9 8 4 39 39 H 1.09002 * 109.47081 * 209.99603 * 11 10 8 40 40 H 1.09004 * 109.47086 * 329.99557 * 11 10 8 41 41 H 1.09005 * 109.45854 * 305.85661 * 13 12 11 42 42 H 1.08999 * 109.45932 * 65.81854 * 13 12 11 43 43 H 1.08993 * 109.50298 * 180.87424 * 14 13 12 44 44 H 1.09007 * 109.50014 * 60.75792 * 14 13 12 45 45 H 1.09008 * 109.52313 * 297.74357 * 15 14 13 46 46 H 0.97000 * 119.99755 * 180.02562 * 19 18 16 47 47 H 1.09000 * 109.50470 * 182.41042 * 24 15 14 48 48 H 1.08999 * 109.53308 * 62.30270 * 24 15 14 49 49 H 1.09004 * 109.46259 * 294.17309 * 25 12 11 50 50 H 1.08999 * 109.46169 * 54.15747 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 0.0043 5 6 4.7899 1.5007 0.0106 6 6 4.7772 2.3892 -1.2350 7 6 4.7716 2.3786 1.2636 8 6 3.6142 -0.7154 -0.0014 9 6 4.8350 -1.5990 -0.0017 10 6 2.3271 -1.1330 -0.0010 11 6 1.8599 -2.5657 -0.0009 12 7 1.7086 -3.0314 1.3841 13 6 0.9997 -2.0368 2.1993 14 6 0.9884 -2.4881 3.6615 15 6 0.2942 -3.8488 3.7653 16 6 0.3330 -4.3264 5.1941 17 1 1.2016 -4.8501 5.5650 18 6 -0.7404 -4.0947 6.0278 19 7 -0.6617 -4.4061 7.3031 20 14 -2.3066 -3.3387 5.3458 21 1 -3.1615 -4.4069 4.7687 22 1 -3.0416 -2.6526 6.4387 23 1 -1.9616 -2.3553 4.2879 24 6 1.0230 -4.8545 2.8697 25 6 1.0332 -4.3345 1.4303 26 1 -0.3633 -0.0008 1.0276 27 1 -0.3634 0.8904 -0.5132 28 1 -0.3634 -0.8896 -0.5146 29 1 5.6908 0.8871 0.0100 30 1 3.8764 3.0028 -1.2344 31 1 5.6563 3.0337 -1.2304 32 1 4.7903 1.7638 -2.1275 33 1 3.8707 2.9922 1.2640 34 1 4.7806 1.7457 2.1508 35 1 5.6506 3.0231 1.2684 36 1 5.1290 -1.8121 -1.0294 37 1 4.6077 -2.5329 0.5124 38 1 5.6513 -1.0909 0.5119 39 1 0.9009 -2.6352 -0.5144 40 1 2.5932 -3.1870 -0.5151 41 1 1.5061 -1.0747 2.1200 42 1 -0.0252 -1.9381 1.8417 43 1 0.4487 -1.7573 4.2637 44 1 2.0129 -2.5737 4.0239 45 1 -0.7418 -3.7550 3.4396 46 1 -1.4171 -4.2434 7.8895 47 1 0.5079 -5.8144 2.9062 48 1 2.0480 -4.9779 3.2193 49 1 0.0081 -4.2251 1.0765 50 1 1.5641 -5.0415 0.7927 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000893487213.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:36:55 Heat of formation + Delta-G solvation = 58.328528 kcal Electronic energy + Delta-G solvation = -26487.183539 eV Core-core repulsion = 23129.145120 eV Total energy + Delta-G solvation = -3358.038419 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.48078 -38.29843 -36.04432 -34.03246 -32.87686 -31.94151 -30.73690 -29.85346 -28.36090 -27.56813 -27.22288 -26.06568 -23.89189 -22.27706 -21.86154 -21.17635 -19.29143 -18.96719 -18.58762 -16.79593 -16.67022 -15.90577 -15.05550 -14.82564 -14.49352 -14.13203 -14.07063 -13.77994 -13.51169 -13.26910 -13.23656 -13.01968 -12.81946 -12.62814 -12.57880 -12.44755 -12.35954 -12.20384 -12.05635 -11.77987 -11.63122 -11.50750 -11.35700 -11.27773 -11.17944 -10.80623 -10.58323 -10.28949 -10.23435 -9.71612 -9.44762 -9.07773 -8.96557 -8.81321 -8.42527 -8.25619 -7.66301 -6.00422 -3.97362 1.92554 2.45041 2.78605 3.33045 3.41261 3.43898 4.22710 4.48793 4.56874 4.61817 4.63986 4.71008 4.83365 5.01581 5.22609 5.26229 5.30631 5.33826 5.38385 5.40782 5.45552 5.46802 5.52198 5.65738 5.70508 5.76585 5.81276 5.86410 5.88737 5.90882 5.95812 6.02099 6.11656 6.19799 6.28956 6.35639 6.43831 6.53656 6.64133 6.79226 6.87266 7.00374 7.12201 7.13642 7.43113 7.54775 7.70504 7.77486 7.85094 7.89116 8.62916 9.06357 9.64304 11.13448 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.019017 B = 0.003770 C = 0.003670 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1472.013463 B = 7426.087105 C = 7628.204114 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.083 3.917 3 N -0.297 5.297 4 N -0.369 5.369 5 C 0.158 3.842 6 C -0.159 4.159 7 C -0.161 4.161 8 C 0.100 3.900 9 C -0.092 4.092 10 C -0.227 4.227 11 C 0.133 3.867 12 N -0.529 5.529 13 C 0.058 3.942 14 C -0.105 4.105 15 C 0.015 3.985 16 C -0.506 4.506 17 H 0.072 0.928 18 C 0.068 3.932 19 N -0.905 5.905 20 Si 0.876 3.124 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.265 1.265 24 C -0.099 4.099 25 C 0.056 3.944 26 H 0.079 0.921 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.099 0.901 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.058 0.942 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.096 0.904 38 H 0.066 0.934 39 H 0.033 0.967 40 H 0.072 0.928 41 H 0.064 0.936 42 H 0.021 0.979 43 H 0.049 0.951 44 H 0.058 0.942 45 H 0.024 0.976 46 H 0.262 0.738 47 H 0.056 0.944 48 H 0.060 0.940 49 H 0.023 0.977 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.459 10.421 -19.229 24.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.083 4.083 3 N -0.119 5.119 4 N -0.152 5.152 5 C 0.056 3.944 6 C -0.217 4.217 7 C -0.219 4.219 8 C -0.027 4.027 9 C -0.151 4.151 10 C -0.239 4.239 11 C 0.005 3.995 12 N -0.254 5.254 13 C -0.070 4.070 14 C -0.144 4.144 15 C -0.004 4.004 16 C -0.544 4.544 17 H 0.090 0.910 18 C -0.132 4.132 19 N -0.543 5.543 20 Si 0.704 3.296 21 H -0.204 1.204 22 H -0.218 1.218 23 H -0.190 1.190 24 C -0.137 4.137 25 C -0.072 4.072 26 H 0.098 0.902 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.117 0.883 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.093 0.907 37 H 0.114 0.886 38 H 0.084 0.916 39 H 0.051 0.949 40 H 0.091 0.909 41 H 0.082 0.918 42 H 0.039 0.961 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.043 0.957 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.079 0.921 49 H 0.041 0.959 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 10.996 11.733 -18.848 24.775 hybrid contribution -1.693 -0.274 -0.486 1.782 sum 9.303 11.459 -19.334 24.324 Atomic orbital electron populations 1.20272 0.87217 1.02719 1.03256 1.22128 0.96559 0.90473 0.99186 1.77205 0.86250 1.22423 1.26002 1.48528 1.05063 1.03739 1.57888 1.21226 0.84414 0.91723 0.97027 1.22115 1.03268 0.99831 0.96453 1.22130 1.03225 0.99995 0.96575 1.20786 0.96872 0.84312 1.00754 1.20475 0.92700 0.99180 1.02715 1.19524 0.91215 0.95775 1.17349 1.20293 0.98837 0.89982 0.90397 1.62075 1.51523 1.03096 1.08685 1.22287 0.94810 0.94670 0.95185 1.21844 1.01295 0.99168 0.92077 1.19176 0.94241 0.91320 0.95712 1.21048 1.03537 1.36448 0.93335 0.91029 1.25071 0.98527 0.95034 0.94618 1.69919 1.31394 1.49080 1.03910 0.86874 0.83977 0.80030 0.78717 1.20369 1.21791 1.19013 1.21602 1.01242 0.98843 0.92024 1.22203 0.95456 0.90265 0.99280 0.90225 0.91250 0.90790 0.88337 0.91152 0.90929 0.92271 0.91129 0.91863 0.90930 0.90749 0.88569 0.91553 0.94893 0.90928 0.91771 0.96099 0.93198 0.92300 0.95735 0.92841 0.92527 0.92146 0.95866 0.92095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.97 9.20 36.01 0.33 -0.64 16 2 C 0.08 1.22 5.87 -82.40 -0.48 0.73 16 3 N -0.30 -4.43 12.43 33.67 0.42 -4.01 16 4 N -0.37 -4.70 3.28 -50.69 -0.17 -4.87 16 5 C 0.16 1.45 3.64 -67.93 -0.25 1.21 16 6 C -0.16 -1.25 9.45 37.16 0.35 -0.90 16 7 C -0.16 -1.46 9.46 37.16 0.35 -1.10 16 8 C 0.10 1.29 6.93 -82.26 -0.57 0.72 16 9 C -0.09 -0.89 9.56 36.01 0.34 -0.54 16 10 C -0.23 -3.23 4.19 -105.06 -0.44 -3.67 16 11 C 0.13 1.86 5.18 -4.98 -0.03 1.83 16 12 N -0.53 -8.81 4.80 -236.11 -1.13 -9.94 16 13 C 0.06 1.07 4.01 -3.83 -0.02 1.06 16 14 C -0.11 -2.32 5.36 -26.66 -0.14 -2.46 16 15 C 0.01 0.34 1.85 -91.65 -0.17 0.17 16 16 C -0.51 -14.32 8.86 -34.44 -0.31 -14.62 16 17 H 0.07 2.21 8.06 -52.49 -0.42 1.78 16 18 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 19 N -0.90 -28.05 13.96 55.43 0.77 -27.28 16 20 Si 0.88 21.99 27.02 -169.99 -4.59 17.40 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.27 -6.40 6.78 56.52 0.38 -6.02 16 24 C -0.10 -2.01 5.36 -26.64 -0.14 -2.15 16 25 C 0.06 0.94 5.42 -3.83 -0.02 0.92 16 26 H 0.08 1.07 7.13 -51.93 -0.37 0.70 16 27 H 0.07 0.79 8.14 -51.92 -0.42 0.36 16 28 H 0.07 0.87 7.26 -51.93 -0.38 0.49 16 29 H 0.10 0.71 6.66 -51.93 -0.35 0.37 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.10 1.02 7.78 -51.93 -0.40 0.61 16 38 H 0.07 0.54 7.08 -51.93 -0.37 0.17 16 39 H 0.03 0.45 7.19 -51.93 -0.37 0.08 16 40 H 0.07 0.90 7.77 -51.93 -0.40 0.50 16 41 H 0.06 1.20 5.65 -51.93 -0.29 0.90 16 42 H 0.02 0.39 6.98 -51.93 -0.36 0.03 16 43 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.06 1.34 8.14 -51.92 -0.42 0.92 16 45 H 0.02 0.60 5.24 -51.92 -0.27 0.32 16 46 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 47 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 48 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 49 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 50 H 0.06 0.89 8.12 -51.93 -0.42 0.47 16 LS Contribution 381.38 15.07 5.75 5.75 Total: -1.00 -32.30 381.38 -9.30 -41.60 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -9.06 Total: -1.09 kcal Atomic # 6 Polarization: -16.28 SS G_CDS: -1.28 Total: -17.56 kcal Atomic # 7 Polarization: -45.99 SS G_CDS: -0.11 Total: -46.10 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.59 Total: 17.40 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -32.30 -9.30 -41.60 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000893487213.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.927 kcal (2) G-P(sol) polarization free energy of solvation -32.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.301 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds