Wall clock time and date at job start Tue Mar 31 2020 08:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47379 * 2 1 4 4 N 1.46506 * 109.46962 * 119.99928 * 2 1 3 5 5 C 1.35197 * 126.00203 * 274.95199 * 4 2 1 6 6 C 1.34574 * 107.62130 * 180.02562 * 5 4 2 7 7 C 1.40488 * 108.03267 * 359.91900 * 6 5 4 8 8 N 1.30131 * 108.23229 * 0.11080 * 7 6 5 9 9 C 1.50948 * 123.48292 * 180.15675 * 7 6 5 10 10 H 1.09002 * 109.71753 * 257.03645 * 9 7 6 11 11 N 1.46901 * 109.75288 * 136.40946 * 9 7 6 12 12 C 1.46900 * 110.99816 * 85.62914 * 11 9 7 13 13 C 1.52999 * 109.47091 * 179.97438 * 12 11 9 14 14 H 1.08999 * 109.47099 * 305.00315 * 13 12 11 15 15 C 1.53007 * 109.46968 * 64.99744 * 13 12 11 16 16 C 1.53004 * 109.47311 * 184.99620 * 13 12 11 17 17 C 1.50699 * 109.46909 * 174.99960 * 16 13 12 18 18 H 1.07993 * 120.00446 * 0.02562 * 17 16 13 19 19 C 1.37876 * 119.99636 * 180.02562 * 17 16 13 20 20 N 1.31519 * 120.00171 * 180.02562 * 19 17 16 21 21 Si 1.86801 * 120.00190 * 359.97438 * 19 17 16 22 22 H 1.48504 * 109.46741 * 90.00011 * 21 19 17 23 23 H 1.48502 * 109.47459 * 209.99616 * 21 19 17 24 24 H 1.48496 * 109.47027 * 330.00435 * 21 19 17 25 25 C 1.53372 * 108.20380 * 16.71186 * 9 7 6 26 26 C 1.53026 * 109.74996 * 309.32636 * 25 9 7 27 27 C 1.50873 * 128.33077 * 179.87789 * 6 5 4 28 28 H 1.09000 * 109.46959 * 299.99706 * 1 2 3 29 29 H 1.09000 * 109.47231 * 60.00323 * 1 2 3 30 30 H 1.09009 * 109.46987 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47498 * 239.99537 * 2 1 3 32 32 H 1.08997 * 109.47289 * 180.02562 * 3 2 1 33 33 H 1.09000 * 109.46675 * 300.00017 * 3 2 1 34 34 H 1.08997 * 109.47386 * 59.99718 * 3 2 1 35 35 H 1.08002 * 126.19076 * 0.09096 * 5 4 2 36 36 H 1.00901 * 110.99914 * 209.58003 * 11 9 7 37 37 H 1.09001 * 109.47077 * 299.99707 * 12 11 9 38 38 H 1.08996 * 109.47490 * 59.99751 * 12 11 9 39 39 H 1.08999 * 109.46745 * 60.00354 * 15 13 12 40 40 H 1.09009 * 109.46828 * 179.97438 * 15 13 12 41 41 H 1.08998 * 109.47205 * 299.99885 * 15 13 12 42 42 H 1.08990 * 109.47054 * 295.00019 * 16 13 12 43 43 H 1.09001 * 109.46646 * 55.00478 * 16 13 12 44 44 H 0.97004 * 120.00321 * 180.02562 * 20 19 17 45 45 H 1.09007 * 109.42209 * 69.40989 * 25 9 7 46 46 H 1.08992 * 109.42816 * 189.29502 * 25 9 7 47 47 H 1.08999 * 109.42778 * 191.77892 * 26 25 9 48 48 H 1.08999 * 109.42550 * 311.67714 * 26 25 9 49 49 H 1.09005 * 109.72024 * 76.97986 * 27 6 5 50 50 H 1.08999 * 109.75554 * 316.35466 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1942 -0.1373 2.4172 6 6 2.6549 -1.0992 3.2379 7 6 2.7650 -2.2875 2.4965 8 7 2.3856 -2.0425 1.2760 9 6 3.2482 -3.5923 3.0815 10 1 4.2788 -3.7731 2.7760 11 7 2.3930 -4.6922 2.6157 12 6 2.8491 -5.1988 1.3144 13 6 1.9365 -6.3409 0.8634 14 1 1.9010 -7.1056 1.6393 15 6 0.5269 -5.7999 0.6158 16 6 2.4831 -6.9506 -0.4290 17 6 1.6557 -8.1521 -0.8068 18 1 0.8230 -8.4508 -0.1874 19 6 1.9618 -8.8701 -1.9434 20 7 1.2394 -9.9184 -2.2735 21 14 3.4017 -8.3532 -3.0153 22 1 4.6351 -9.0376 -2.5509 23 1 3.1286 -8.7285 -4.4259 24 1 3.5862 -6.8828 -2.9209 25 6 3.1721 -3.4895 4.6099 26 6 3.8648 -2.2074 5.0770 27 6 3.0105 -0.9905 4.7001 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0278 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 3.1300 1.4424 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6767 1.9563 0.8899 35 1 1.9991 0.8905 2.6857 36 1 2.3536 -5.4338 3.2987 37 1 2.8155 -4.3945 0.5794 38 1 3.8715 -5.5654 1.4053 39 1 0.5624 -5.0352 -0.1602 40 1 -0.1232 -6.6137 0.2940 41 1 0.1374 -5.3656 1.5365 42 1 2.4357 -6.2109 -1.2281 43 1 3.5185 -7.2557 -0.2772 44 1 1.4550 -10.4238 -3.0729 45 1 2.1273 -3.4708 4.9204 46 1 3.6676 -4.3515 5.0564 47 1 3.9939 -2.2386 6.1589 48 1 4.8404 -2.1271 4.5975 49 1 2.1005 -0.9799 5.3001 50 1 3.5765 -0.0755 4.8745 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001119244949.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:13 Heat of formation + Delta-G solvation = 50.078223 kcal Electronic energy + Delta-G solvation = -25782.527546 eV Core-core repulsion = 22424.131367 eV Total energy + Delta-G solvation = -3358.396179 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.45903 -37.88893 -36.22645 -35.08993 -33.70382 -32.01188 -30.35805 -29.54328 -28.17004 -27.56286 -27.01838 -25.00861 -24.03786 -22.21167 -21.82926 -21.05712 -20.04801 -19.08641 -18.67166 -16.73688 -16.67120 -15.86445 -15.31206 -15.02550 -14.65879 -14.54537 -14.18886 -13.99015 -13.76738 -13.57479 -13.31100 -13.07808 -12.92720 -12.72696 -12.54143 -12.22771 -12.12422 -12.08116 -11.69338 -11.58358 -11.55513 -11.34443 -11.17461 -10.94685 -10.87244 -10.81983 -10.55656 -10.35723 -10.08901 -9.81884 -9.54613 -9.28465 -9.14307 -8.95194 -8.44291 -8.23237 -8.08105 -5.95139 -3.91144 2.01133 2.48088 2.86721 3.36474 3.43603 3.49500 4.22652 4.41278 4.53640 4.56533 4.61935 4.68338 4.77790 4.81585 4.94274 5.14000 5.17003 5.24323 5.31780 5.37226 5.38414 5.39010 5.49563 5.52921 5.64871 5.70024 5.77028 5.78737 5.79992 5.89305 5.90927 5.95441 6.14245 6.18158 6.20295 6.26314 6.52833 6.58902 6.72565 6.78597 7.00285 7.13949 7.17878 7.25999 7.36861 7.42248 7.60659 7.74162 7.91312 7.95694 8.65758 9.11285 9.68417 11.18431 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.013716 B = 0.003680 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.937731 B = 7605.843929 C = 8887.780218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.157 3.843 3 C -0.162 4.162 4 N -0.377 5.377 5 C 0.052 3.948 6 C -0.240 4.240 7 C 0.096 3.904 8 N -0.262 5.262 9 C 0.167 3.833 10 H 0.057 0.943 11 N -0.675 5.675 12 C 0.062 3.938 13 C -0.071 4.071 14 H 0.057 0.943 15 C -0.120 4.120 16 C -0.009 4.009 17 C -0.509 4.509 18 H 0.073 0.927 19 C 0.064 3.936 20 N -0.907 5.907 21 Si 0.877 3.123 22 H -0.279 1.279 23 H -0.289 1.289 24 H -0.266 1.266 25 C -0.117 4.117 26 C -0.113 4.113 27 C -0.037 4.037 28 H 0.059 0.941 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.080 0.920 34 H 0.064 0.936 35 H 0.164 0.836 36 H 0.341 0.659 37 H 0.078 0.922 38 H 0.020 0.980 39 H 0.038 0.962 40 H 0.055 0.945 41 H 0.042 0.958 42 H 0.015 0.985 43 H 0.007 0.993 44 H 0.261 0.739 45 H 0.076 0.924 46 H 0.068 0.932 47 H 0.066 0.934 48 H 0.062 0.938 49 H 0.066 0.934 50 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.519 24.990 13.047 28.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.055 3.945 3 C -0.220 4.220 4 N -0.160 5.160 5 C -0.092 4.092 6 C -0.252 4.252 7 C -0.074 4.074 8 N -0.081 5.081 9 C 0.055 3.945 10 H 0.074 0.926 11 N -0.306 5.306 12 C -0.067 4.067 13 C -0.090 4.090 14 H 0.075 0.925 15 C -0.177 4.177 16 C -0.047 4.047 17 C -0.547 4.547 18 H 0.092 0.908 19 C -0.136 4.136 20 N -0.547 5.547 21 Si 0.704 3.296 22 H -0.205 1.205 23 H -0.215 1.215 24 H -0.190 1.190 25 C -0.155 4.155 26 C -0.152 4.152 27 C -0.075 4.075 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.088 0.912 31 H 0.119 0.881 32 H 0.084 0.916 33 H 0.099 0.901 34 H 0.083 0.917 35 H 0.181 0.819 36 H 0.160 0.840 37 H 0.096 0.904 38 H 0.038 0.962 39 H 0.057 0.943 40 H 0.074 0.926 41 H 0.061 0.939 42 H 0.034 0.966 43 H 0.025 0.975 44 H 0.071 0.929 45 H 0.095 0.905 46 H 0.087 0.913 47 H 0.085 0.915 48 H 0.081 0.919 49 H 0.084 0.916 50 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.785 24.871 11.307 27.462 hybrid contribution 1.572 0.096 0.202 1.588 sum 4.357 24.967 11.510 27.836 Atomic orbital electron populations 1.22233 0.93749 1.03663 1.02595 1.21177 0.94769 0.92377 0.86188 1.22176 1.02163 0.94322 1.03355 1.48920 1.51703 1.07335 1.08066 1.21774 1.02224 0.99208 0.86016 1.19990 1.14283 0.93284 0.97656 1.22185 0.98769 0.95504 0.90896 1.77220 1.19053 0.91944 1.19920 1.19926 0.94423 0.87020 0.93131 0.92564 1.60380 1.52831 1.12008 1.05413 1.22272 0.95871 0.98262 0.90283 1.20976 0.94992 0.94394 0.98652 0.92460 1.21543 0.96575 0.99925 0.99644 1.19603 0.95800 0.96294 0.92955 1.21154 1.14838 1.09690 1.09031 0.90845 1.25020 0.96335 0.94773 0.97475 1.69921 1.39985 1.18709 1.26061 0.86822 0.83294 0.79646 0.79796 1.20455 1.21525 1.19038 1.21725 1.02250 0.98011 0.93554 1.21514 0.98974 0.94125 1.00543 1.19935 0.99088 0.97880 0.90592 0.92181 0.90709 0.91241 0.88088 0.91644 0.90150 0.91735 0.81856 0.84000 0.90382 0.96194 0.94297 0.92579 0.93896 0.96642 0.97492 0.92925 0.90507 0.91297 0.91486 0.91889 0.91567 0.91721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.47 9.52 37.16 0.35 -1.12 16 2 C 0.16 1.53 3.93 -67.93 -0.27 1.27 16 3 C -0.16 -1.06 8.83 37.15 0.33 -0.73 16 4 N -0.38 -4.84 3.54 -54.99 -0.19 -5.03 16 5 C 0.05 0.58 10.55 -17.37 -0.18 0.39 16 6 C -0.24 -2.91 5.89 -104.99 -0.62 -3.53 16 7 C 0.10 1.42 6.62 -82.34 -0.55 0.87 16 8 N -0.26 -4.28 11.48 33.75 0.39 -3.90 16 9 C 0.17 2.25 2.85 -68.55 -0.20 2.05 16 10 H 0.06 0.78 7.81 -51.93 -0.41 0.38 16 11 N -0.67 -10.36 5.76 -107.62 -0.62 -10.98 16 12 C 0.06 1.12 4.86 -3.82 -0.02 1.10 16 13 C -0.07 -1.50 2.48 -90.61 -0.22 -1.73 16 14 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 15 C -0.12 -2.51 8.89 37.16 0.33 -2.18 16 16 C -0.01 -0.22 3.52 -27.88 -0.10 -0.31 16 17 C -0.51 -14.90 8.96 -34.44 -0.31 -15.21 16 18 H 0.07 2.30 7.30 -52.49 -0.38 1.92 16 19 C 0.06 1.93 5.47 -17.82 -0.10 1.83 16 20 N -0.91 -28.70 13.96 55.43 0.77 -27.92 16 21 Si 0.88 22.57 27.47 -169.99 -4.67 17.90 16 22 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 24 H -0.27 -6.66 6.54 56.52 0.37 -6.29 16 25 C -0.12 -1.19 5.15 -26.52 -0.14 -1.33 16 26 C -0.11 -0.98 5.87 -26.52 -0.16 -1.14 16 27 C -0.04 -0.33 6.28 -27.60 -0.17 -0.50 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.80 8.14 -51.92 -0.42 0.37 16 31 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.06 0.36 7.16 -51.93 -0.37 -0.01 16 35 H 0.16 1.24 7.27 -52.49 -0.38 0.86 16 36 H 0.34 4.73 8.38 -39.29 -0.33 4.40 16 37 H 0.08 1.55 7.05 -51.93 -0.37 1.18 16 38 H 0.02 0.36 8.06 -51.93 -0.42 -0.06 16 39 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 1.27 6.95 -51.92 -0.36 0.91 16 41 H 0.04 0.83 7.75 -51.93 -0.40 0.42 16 42 H 0.02 0.40 7.20 -51.93 -0.37 0.02 16 43 H 0.01 0.17 7.57 -51.93 -0.39 -0.22 16 44 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 45 H 0.08 0.83 8.10 -51.93 -0.42 0.41 16 46 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 47 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 48 H 0.06 0.56 8.10 -51.93 -0.42 0.14 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 387.34 15.07 5.84 5.84 Total: -1.00 -33.88 387.34 -9.76 -43.64 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -9.27 Total: 0.70 kcal Atomic # 6 Polarization: -18.24 SS G_CDS: -2.01 Total: -20.25 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.35 Total: -47.83 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -4.67 Total: 17.90 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.88 -9.76 -43.64 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001119244949.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.720 kcal (2) G-P(sol) polarization free energy of solvation -33.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds