Wall clock time and date at job start Tue Mar 31 2020 08:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 C 1.53001 * 109.46819 * 240.00121 * 2 1 3 5 5 C 1.50694 * 109.46741 * 120.00269 * 2 1 3 6 6 N 1.30841 * 125.89452 * 246.47974 * 5 2 1 7 7 N 1.40089 * 108.20594 * 180.02562 * 6 5 2 8 8 H 0.96997 * 126.04458 * 180.02562 * 7 6 5 9 9 C 1.34958 * 107.92235 * 359.75419 * 7 6 5 10 10 C 1.35313 * 107.74434 * 0.39466 * 9 7 6 11 11 C 1.50703 * 126.03864 * 179.86783 * 10 9 7 12 12 N 1.46903 * 109.46873 * 105.18203 * 11 10 9 13 13 C 1.46898 * 111.00277 * 158.24768 * 12 11 10 14 14 C 1.50692 * 109.47349 * 202.27625 * 13 12 11 15 15 H 1.08008 * 120.00061 * 5.57809 * 14 13 12 16 16 C 1.37875 * 120.00195 * 185.57571 * 14 13 12 17 17 N 1.31521 * 120.00202 * 180.02562 * 16 14 13 18 18 Si 1.86796 * 119.99940 * 359.97438 * 16 14 13 19 19 H 1.48503 * 109.47092 * 89.99896 * 18 16 14 20 20 H 1.48503 * 109.47592 * 209.99962 * 18 16 14 21 21 H 1.48503 * 109.47107 * 330.00013 * 18 16 14 22 22 C 1.46899 * 110.99904 * 282.20099 * 12 11 10 23 23 C 1.55238 * 110.58130 * 179.83127 * 22 12 11 24 24 C 1.54886 * 102.58948 * 203.33544 * 23 22 12 25 25 C 1.54265 * 104.31228 * 37.93291 * 24 23 22 26 26 C 1.53870 * 106.59935 * 336.32599 * 25 24 23 27 27 H 1.09004 * 109.46636 * 302.99351 * 1 2 3 28 28 H 1.08999 * 109.47253 * 62.98649 * 1 2 3 29 29 H 1.08998 * 109.47328 * 182.99269 * 1 2 3 30 30 H 1.09006 * 109.46583 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47380 * 300.00011 * 3 2 1 32 32 H 1.08998 * 109.47004 * 60.00246 * 3 2 1 33 33 H 1.09008 * 109.46980 * 308.28540 * 4 2 1 34 34 H 1.08997 * 109.47083 * 68.28606 * 4 2 1 35 35 H 1.08994 * 109.46764 * 188.28871 * 4 2 1 36 36 H 1.07998 * 126.12728 * 180.23444 * 9 7 6 37 37 H 1.08995 * 109.47177 * 345.18409 * 11 10 9 38 38 H 1.08996 * 109.47516 * 225.18011 * 11 10 9 39 39 H 1.09001 * 109.46639 * 322.27542 * 13 12 11 40 40 H 1.08994 * 109.47016 * 82.27255 * 13 12 11 41 41 H 0.96999 * 119.99820 * 180.02562 * 17 16 14 42 42 H 1.09003 * 110.43363 * 302.41422 * 22 12 11 43 43 H 1.09005 * 110.89659 * 85.04911 * 23 22 12 44 44 H 1.09001 * 110.76558 * 321.57393 * 23 22 12 45 45 H 1.08999 * 110.48832 * 279.18536 * 24 23 22 46 46 H 1.09006 * 110.48583 * 156.67631 * 24 23 22 47 47 H 1.09006 * 110.03086 * 95.60478 * 25 24 23 48 48 H 1.08996 * 110.03625 * 216.98477 * 25 24 23 49 49 H 1.08999 * 110.03654 * 119.28116 * 26 25 24 50 50 H 1.09000 * 110.03202 * 240.66918 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7105 1.2304 6 7 2.6868 -0.1600 2.2206 7 7 2.9719 -1.1556 3.1640 8 1 3.4483 -1.0305 3.9996 9 6 2.4615 -2.3186 2.7075 10 6 1.8799 -2.0722 1.5109 11 6 1.1849 -3.0849 0.6376 12 7 -0.2688 -2.8926 0.7264 13 6 -0.9482 -3.4663 -0.4428 14 6 -2.2941 -2.8104 -0.6137 15 1 -2.5761 -1.9830 0.0206 16 6 -3.1656 -3.2666 -1.5798 17 7 -4.3401 -2.6939 -1.7293 18 14 -2.6777 -4.6972 -2.6774 19 1 -3.1016 -5.9726 -2.0459 20 1 -3.3395 -4.5553 -3.9992 21 1 -1.2039 -4.7010 -2.8597 22 6 -0.7994 -3.4585 1.9738 23 6 -2.3348 -3.2462 2.0596 24 6 -2.6010 -3.3181 3.5837 25 6 -1.3878 -2.6057 4.2167 26 6 -0.2424 -2.6949 3.1931 27 1 -0.3633 0.5596 0.8620 28 1 -0.3634 0.4668 -0.9155 29 1 -0.3634 -1.0262 0.0537 30 1 3.1301 1.4424 -0.0005 31 1 1.6767 1.9564 -0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.5607 -1.6973 -1.3264 34 1 1.8026 -0.1290 -2.1330 35 1 3.1198 -0.8513 -1.1783 36 1 2.5110 -3.2751 3.2066 37 1 1.4396 -4.0901 0.9736 38 1 1.5061 -2.9550 -0.3958 39 1 -0.3446 -3.2947 -1.3341 40 1 -1.0822 -4.5379 -0.2955 41 1 -4.9533 -3.0151 -2.4087 42 1 -0.5567 -4.5188 2.0442 43 1 -2.8670 -4.0409 1.5367 44 1 -2.6125 -2.2690 1.6645 45 1 -2.6492 -4.3557 3.9141 46 1 -3.5240 -2.7954 3.8349 47 1 -1.6300 -1.5618 4.4159 48 1 -1.1023 -3.1056 5.1422 49 1 0.0713 -1.6944 2.8956 50 1 0.5999 -3.2381 3.6217 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138579649.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:07 Heat of formation + Delta-G solvation = 76.985277 kcal Electronic energy + Delta-G solvation = -27909.281600 eV Core-core repulsion = 24552.052198 eV Total energy + Delta-G solvation = -3357.229402 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.24348 -38.25727 -36.38859 -34.78799 -32.64222 -30.88041 -30.37427 -28.21041 -27.40669 -27.10636 -26.62506 -26.43688 -23.74089 -22.26168 -21.05308 -20.23344 -19.67674 -19.15985 -17.97390 -17.44076 -16.51813 -15.34839 -15.15398 -14.60309 -14.46483 -14.26140 -13.85177 -13.76778 -13.32060 -13.23422 -12.85467 -12.73428 -12.67760 -12.27760 -12.19859 -11.88321 -11.71902 -11.45636 -11.16812 -10.85259 -10.80178 -10.67397 -10.64565 -10.47202 -10.40793 -10.27464 -10.22409 -10.09344 -9.99773 -9.87019 -9.75781 -9.68766 -8.98273 -8.92042 -8.49367 -8.00464 -7.24853 -5.98583 -3.93125 2.17331 3.08949 3.13239 3.29971 3.38888 3.40240 4.46210 4.77080 4.89146 5.07401 5.18971 5.29437 5.34004 5.34697 5.47042 5.50654 5.56725 5.60585 5.87490 5.95029 5.96075 6.03521 6.07661 6.13995 6.17609 6.19907 6.20791 6.27434 6.35097 6.38764 6.44808 6.47293 6.52756 6.55637 6.64554 6.67775 6.73980 6.78329 6.85121 6.90152 6.98035 7.05570 7.19535 7.38533 7.52428 7.65713 7.75439 7.97798 8.02941 8.16641 8.71772 9.13578 9.63405 11.13499 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.012816 B = 0.006529 C = 0.005140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2184.269341 B = 4287.435633 C = 5446.260270 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.018 3.982 3 C -0.134 4.134 4 C -0.142 4.142 5 C 0.119 3.881 6 N -0.304 5.304 7 N -0.489 5.489 8 H 0.433 0.567 9 C 0.052 3.948 10 C -0.203 4.203 11 C 0.116 3.884 12 N -0.508 5.508 13 C 0.158 3.842 14 C -0.496 4.496 15 H 0.092 0.908 16 C 0.069 3.931 17 N -0.900 5.900 18 Si 0.866 3.134 19 H -0.281 1.281 20 H -0.289 1.289 21 H -0.269 1.269 22 C 0.093 3.907 23 C -0.096 4.096 24 C -0.132 4.132 25 C -0.121 4.121 26 C -0.114 4.114 27 H 0.038 0.962 28 H 0.048 0.952 29 H 0.134 0.866 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.072 0.928 34 H 0.059 0.941 35 H 0.045 0.955 36 H 0.166 0.834 37 H 0.028 0.972 38 H 0.082 0.918 39 H 0.024 0.976 40 H -0.014 1.014 41 H 0.261 0.739 42 H 0.028 0.972 43 H 0.070 0.930 44 H 0.093 0.907 45 H 0.051 0.949 46 H 0.057 0.943 47 H 0.055 0.945 48 H 0.047 0.953 49 H 0.077 0.923 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.763 0.317 8.550 15.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.015 3.985 3 C -0.192 4.192 4 C -0.199 4.199 5 C -0.048 4.048 6 N -0.126 5.126 7 N -0.196 5.196 8 H 0.275 0.725 9 C -0.095 4.095 10 C -0.215 4.215 11 C -0.013 4.013 12 N -0.232 5.232 13 C 0.032 3.968 14 C -0.534 4.534 15 H 0.110 0.890 16 C -0.132 4.132 17 N -0.539 5.539 18 Si 0.694 3.306 19 H -0.207 1.207 20 H -0.215 1.215 21 H -0.194 1.194 22 C -0.015 4.015 23 C -0.133 4.133 24 C -0.170 4.170 25 C -0.159 4.159 26 C -0.152 4.152 27 H 0.057 0.943 28 H 0.067 0.933 29 H 0.152 0.848 30 H 0.067 0.933 31 H 0.072 0.928 32 H 0.073 0.927 33 H 0.091 0.909 34 H 0.078 0.922 35 H 0.064 0.936 36 H 0.183 0.817 37 H 0.046 0.954 38 H 0.100 0.900 39 H 0.042 0.958 40 H 0.004 0.996 41 H 0.071 0.929 42 H 0.045 0.955 43 H 0.089 0.911 44 H 0.112 0.888 45 H 0.070 0.930 46 H 0.076 0.924 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.096 0.904 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.002 1.865 8.900 15.866 hybrid contribution 0.288 -2.467 -0.300 2.502 sum 13.290 -0.602 8.599 15.841 Atomic orbital electron populations 1.22399 0.91018 1.08678 1.00041 1.18971 0.97318 0.93253 0.88926 1.21806 1.00327 0.95587 1.01443 1.21982 0.99974 1.01667 0.96295 1.22121 0.95208 0.92421 0.95030 1.77252 1.22297 1.12385 1.00678 1.46103 1.47621 1.06011 1.19849 0.72476 1.22238 0.99365 0.91662 0.96264 1.19871 1.08505 0.95358 0.97716 1.20572 0.89092 0.93355 0.98232 1.61977 1.00869 1.57657 1.02683 1.20280 0.95738 0.92822 0.87946 1.21174 0.97121 1.17371 1.17782 0.89036 1.24860 0.94958 0.96416 0.96998 1.69881 1.07861 1.41720 1.34442 0.87014 0.79083 0.83719 0.80795 1.20674 1.21466 1.19354 1.22417 0.95903 0.94146 0.89066 1.22745 0.93634 1.04751 0.92215 1.22450 0.97275 0.99143 0.98124 1.22109 0.96198 0.99971 0.97654 1.22515 0.96328 1.01576 0.94732 0.94318 0.93274 0.84835 0.93323 0.92776 0.92663 0.90929 0.92244 0.93584 0.81702 0.95416 0.89979 0.95756 0.99616 0.92875 0.95456 0.91145 0.88827 0.92975 0.92387 0.92619 0.93375 0.90389 0.93521 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.95 8.40 37.16 0.31 -2.64 16 2 C 0.02 0.27 0.82 -155.66 -0.13 0.15 16 3 C -0.13 -1.92 7.96 37.16 0.30 -1.62 16 4 C -0.14 -2.08 8.05 37.16 0.30 -1.78 16 5 C 0.12 1.89 5.50 -82.41 -0.45 1.44 16 6 N -0.30 -4.67 12.00 33.67 0.40 -4.27 16 7 N -0.49 -5.91 7.36 30.45 0.22 -5.69 16 8 H 0.43 3.73 8.96 -182.61 -1.64 2.09 16 9 C 0.05 0.64 8.98 -17.22 -0.15 0.48 16 10 C -0.20 -3.02 3.36 -105.05 -0.35 -3.37 16 11 C 0.12 1.86 4.68 -4.97 -0.02 1.84 16 12 N -0.51 -9.41 1.70 -227.31 -0.39 -9.80 16 13 C 0.16 3.45 3.35 -4.98 -0.02 3.44 16 14 C -0.50 -12.62 6.97 -34.44 -0.24 -12.86 16 15 H 0.09 2.53 5.97 -52.48 -0.31 2.22 16 16 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 17 N -0.90 -26.17 13.96 55.43 0.77 -25.40 16 18 Si 0.87 20.60 27.36 -169.99 -4.65 15.95 16 19 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.27 -6.13 6.71 56.52 0.38 -5.75 16 22 C 0.09 1.64 2.40 -65.86 -0.16 1.48 16 23 C -0.10 -1.85 4.53 -24.55 -0.11 -1.96 16 24 C -0.13 -2.10 6.82 -25.07 -0.17 -2.27 16 25 C -0.12 -1.77 6.80 -25.62 -0.17 -1.94 16 26 C -0.11 -1.73 4.33 -25.61 -0.11 -1.84 16 27 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.13 2.67 3.71 -51.93 -0.19 2.48 16 30 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 32 H 0.05 0.82 8.13 -51.93 -0.42 0.40 16 33 H 0.07 1.14 5.10 -51.92 -0.26 0.88 16 34 H 0.06 0.82 8.13 -51.93 -0.42 0.39 16 35 H 0.05 0.62 8.12 -51.93 -0.42 0.20 16 36 H 0.17 1.58 7.35 -52.49 -0.39 1.19 16 37 H 0.03 0.42 7.89 -51.93 -0.41 0.01 16 38 H 0.08 1.33 4.58 -51.93 -0.24 1.09 16 39 H 0.02 0.54 6.96 -51.93 -0.36 0.18 16 40 H -0.01 -0.31 7.08 -51.93 -0.37 -0.68 16 41 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 42 H 0.03 0.49 8.06 -51.93 -0.42 0.07 16 43 H 0.07 1.51 7.60 -51.93 -0.39 1.11 16 44 H 0.09 2.07 5.92 -51.93 -0.31 1.76 16 45 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 49 H 0.08 1.34 6.13 -51.93 -0.32 1.03 16 50 H 0.05 0.62 5.94 -51.93 -0.31 0.31 16 LS Contribution 360.83 15.07 5.44 5.44 Total: -1.00 -28.47 360.83 -9.21 -37.68 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -9.72 Total: 5.78 kcal Atomic # 6 Polarization: -18.41 SS G_CDS: -1.28 Total: -19.70 kcal Atomic # 7 Polarization: -46.16 SS G_CDS: 1.01 Total: -45.15 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.65 Total: 15.95 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -28.47 -9.21 -37.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138579649.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.667 kcal (2) G-P(sol) polarization free energy of solvation -28.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds