Wall clock time and date at job start Tue Mar 31 2020 08:42:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47322 * 2 1 4 4 C 1.52999 * 109.46963 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.46928 * 180.02562 * 4 3 2 6 6 N 1.30498 * 125.64895 * 305.02020 * 5 4 3 7 7 C 1.34137 * 109.25234 * 179.73470 * 6 5 4 8 8 C 1.34667 * 108.02319 * 0.39895 * 7 6 5 9 9 C 1.50696 * 126.58969 * 179.87335 * 8 7 6 10 10 N 1.46898 * 109.47321 * 272.81684 * 9 8 7 11 11 C 1.46893 * 111.00350 * 172.27981 * 10 9 8 12 12 C 1.50700 * 109.47486 * 199.59686 * 11 10 9 13 13 H 1.08001 * 119.99419 * 5.10485 * 12 11 10 14 14 C 1.37872 * 119.99925 * 185.10216 * 12 11 10 15 15 N 1.31514 * 120.00735 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00021 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46728 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47255 * 119.99775 * 16 14 12 19 19 H 1.48497 * 109.47487 * 240.00548 * 16 14 12 20 20 C 1.46904 * 111.00005 * 296.23300 * 10 9 8 21 21 C 1.55239 * 110.58143 * 77.89931 * 20 10 9 22 22 C 1.54884 * 102.59131 * 203.33768 * 21 20 10 23 23 C 1.54264 * 104.31192 * 37.93411 * 22 21 20 24 24 C 1.53880 * 106.59981 * 336.32227 * 23 22 21 25 25 N 1.35050 * 125.64879 * 124.99706 * 5 4 3 26 26 H 0.96996 * 126.39868 * 0.02562 * 25 5 4 27 27 H 1.09001 * 109.46611 * 300.00165 * 1 2 3 28 28 H 1.08998 * 109.47015 * 59.99522 * 1 2 3 29 29 H 1.08993 * 109.47389 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46611 * 239.99835 * 2 1 3 31 31 H 1.08998 * 109.47015 * 120.00477 * 2 1 3 32 32 H 1.08998 * 109.46921 * 60.00235 * 3 2 1 33 33 H 1.09005 * 109.46798 * 299.99700 * 3 2 1 34 34 H 1.08994 * 109.47891 * 59.99686 * 4 3 2 35 35 H 1.09006 * 109.47082 * 299.99540 * 4 3 2 36 36 H 1.08001 * 125.98446 * 180.24623 * 7 6 5 37 37 H 1.09006 * 109.46999 * 152.81812 * 9 8 7 38 38 H 1.08999 * 109.47299 * 32.82043 * 9 8 7 39 39 H 1.08998 * 109.47023 * 319.59809 * 11 10 9 40 40 H 1.09000 * 109.47273 * 79.59375 * 11 10 9 41 41 H 0.96991 * 120.00742 * 180.02562 * 15 14 12 42 42 H 1.08994 * 110.43559 * 200.48362 * 20 10 9 43 43 H 1.09008 * 110.89748 * 85.04941 * 21 20 10 44 44 H 1.09004 * 110.76727 * 321.57674 * 21 20 10 45 45 H 1.08999 * 110.48975 * 279.19386 * 22 21 20 46 46 H 1.09001 * 110.49003 * 156.67415 * 22 21 20 47 47 H 1.09006 * 110.03621 * 95.60690 * 23 22 21 48 48 H 1.09002 * 110.03626 * 216.99360 * 23 22 21 49 49 H 1.09000 * 110.03297 * 119.28243 * 24 23 22 50 50 H 1.08995 * 110.03360 * 240.66963 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0724 2.8632 0.0000 6 7 3.7519 3.7836 -0.8678 7 6 4.3813 4.9258 -0.5539 8 6 5.1268 4.7023 0.5451 9 6 6.0053 5.7013 1.2531 10 7 7.3396 5.7020 0.6388 11 6 8.1674 6.7885 1.1791 12 6 9.3054 7.0715 0.2325 13 1 9.3578 6.5596 -0.7170 14 6 10.2793 7.9839 0.5786 15 7 10.2157 8.6070 1.7351 16 14 11.6895 8.3353 -0.5950 17 1 11.5316 7.5100 -1.8195 18 1 11.6808 9.7740 -0.9626 19 1 12.9773 8.0005 0.0641 20 6 7.9997 4.4011 0.8123 21 6 7.4375 3.3648 -0.1976 22 6 7.7512 2.0149 0.4940 23 6 7.5048 2.2876 1.9922 24 6 7.6628 3.8048 2.1947 25 7 4.9286 3.3949 0.8989 26 1 5.3285 2.9361 1.6542 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8901 34 1 3.9331 0.9287 -0.8907 35 1 3.9337 0.9284 0.8892 36 1 4.3056 5.8602 -1.0902 37 1 6.0898 5.4294 2.3053 38 1 5.5660 6.6953 1.1689 39 1 7.5592 7.6856 1.2946 40 1 8.5668 6.4930 2.1493 41 1 10.9007 9.2491 1.9784 42 1 9.0784 4.5028 0.6934 43 1 7.9523 3.4368 -1.1557 44 1 6.3626 3.4931 -0.3249 45 1 8.7898 1.7313 0.3237 46 1 7.0798 1.2360 0.1326 47 1 6.4968 1.9772 2.2674 48 1 8.2380 1.7515 2.5949 49 1 6.7315 4.2307 2.5680 50 1 8.4726 4.0056 2.8961 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141069757.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:27 Heat of formation + Delta-G solvation = 60.172637 kcal Electronic energy + Delta-G solvation = -26370.195379 eV Core-core repulsion = 23012.236926 eV Total energy + Delta-G solvation = -3357.958453 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -42.30571 -38.62968 -35.99338 -34.94027 -32.70540 -32.16476 -31.61279 -29.21035 -28.55181 -27.62100 -26.37297 -24.60630 -23.56126 -21.71327 -21.39699 -20.91999 -20.33940 -19.93875 -18.89368 -17.10279 -16.21880 -15.97161 -15.75862 -15.41526 -14.92119 -14.69980 -14.30127 -13.95079 -13.85460 -13.61222 -13.13495 -13.09969 -13.01779 -12.69041 -12.31253 -12.23499 -11.98582 -11.60386 -11.51897 -11.38712 -11.12327 -11.08015 -11.03325 -10.91718 -10.76780 -10.75819 -10.66302 -10.39376 -10.26364 -10.03876 -9.80409 -9.69235 -9.39977 -9.26492 -8.45369 -7.87422 -7.26677 -6.04485 -4.05685 2.28969 3.26720 3.29980 3.37852 3.41450 3.43957 4.41515 4.47790 4.66868 4.74664 4.78089 4.84364 4.91438 4.93749 5.09646 5.16954 5.26500 5.31156 5.35625 5.43716 5.45984 5.58065 5.63663 5.64500 5.67036 5.73341 5.80678 5.86700 5.87241 5.92291 5.98163 6.00545 6.02632 6.12241 6.16508 6.19873 6.22122 6.32341 6.52034 6.57274 6.70795 6.85629 7.06804 7.17854 7.29357 7.60132 7.81566 8.05505 8.14701 8.35532 8.49400 9.03754 9.59018 11.05684 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.026122 B = 0.003258 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.624264 B = 8593.351098 C = 8952.410569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.110 4.110 4 C -0.029 4.029 5 C 0.193 3.807 6 N -0.486 5.486 7 C -0.018 4.018 8 C 0.012 3.988 9 C 0.114 3.886 10 N -0.518 5.518 11 C 0.192 3.808 12 C -0.501 4.501 13 H 0.064 0.936 14 C 0.054 3.946 15 N -0.900 5.900 16 Si 0.896 3.104 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.286 1.286 20 C 0.093 3.907 21 C -0.142 4.142 22 C -0.125 4.125 23 C -0.119 4.119 24 C -0.177 4.177 25 N -0.565 5.565 26 H 0.413 0.587 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.063 0.937 31 H 0.059 0.941 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.086 0.914 35 H 0.070 0.930 36 H 0.168 0.832 37 H 0.042 0.958 38 H 0.093 0.907 39 H 0.027 0.973 40 H -0.001 1.001 41 H 0.260 0.740 42 H 0.093 0.907 43 H 0.060 0.940 44 H 0.096 0.904 45 H 0.064 0.936 46 H 0.056 0.944 47 H 0.045 0.955 48 H 0.064 0.936 49 H 0.071 0.929 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.583 -16.568 0.978 21.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.148 4.148 4 C -0.068 4.068 5 C -0.070 4.070 6 N -0.206 5.206 7 C -0.166 4.166 8 C -0.103 4.103 9 C -0.015 4.015 10 N -0.241 5.241 11 C 0.067 3.933 12 C -0.540 4.540 13 H 0.083 0.917 14 C -0.146 4.146 15 N -0.540 5.540 16 Si 0.724 3.276 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.212 1.212 20 C -0.016 4.016 21 C -0.180 4.180 22 C -0.163 4.163 23 C -0.157 4.157 24 C -0.216 4.216 25 N -0.174 5.174 26 H 0.256 0.744 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.105 0.895 35 H 0.089 0.911 36 H 0.185 0.815 37 H 0.060 0.940 38 H 0.111 0.889 39 H 0.045 0.955 40 H 0.017 0.983 41 H 0.070 0.930 42 H 0.111 0.889 43 H 0.079 0.921 44 H 0.113 0.887 45 H 0.083 0.917 46 H 0.075 0.925 47 H 0.063 0.937 48 H 0.083 0.917 49 H 0.089 0.911 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -14.077 -16.379 -0.112 21.598 hybrid contribution 1.888 0.132 1.456 2.388 sum -12.189 -16.247 1.344 20.355 Atomic orbital electron populations 1.21759 0.95841 1.01401 1.01973 1.21546 0.95993 0.96786 1.01940 1.21525 0.93394 0.96597 1.03282 1.19936 0.96322 0.87600 1.02989 1.22977 0.96418 0.97342 0.90236 1.70150 1.25262 0.99794 1.25425 1.22021 0.99833 0.97689 0.97024 1.21156 1.03411 0.84883 1.00880 1.20718 0.90188 0.96023 0.94560 1.62310 1.00856 1.03828 1.57125 1.19780 0.91651 0.87691 0.94166 1.21183 1.06661 1.22772 1.03404 0.91742 1.24982 0.98213 0.96105 0.95347 1.69957 1.35026 1.27708 1.21286 0.86463 0.81887 0.78122 0.81108 1.19624 1.21008 1.21209 1.22503 0.99749 0.88585 0.90765 1.23242 1.03813 0.92648 0.98289 1.22345 1.01205 0.98119 0.94655 1.22116 0.99581 0.96736 0.97303 1.23118 1.02561 0.94955 1.00967 1.43784 1.37149 1.10736 1.25739 0.74428 0.92833 0.92572 0.92919 0.91837 0.92217 0.92112 0.90470 0.89549 0.91090 0.81491 0.94008 0.88905 0.95523 0.98327 0.93014 0.88926 0.92110 0.88653 0.91743 0.92530 0.93650 0.91721 0.91072 0.91549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.04 9.91 37.16 0.37 -0.67 16 2 C -0.13 -0.89 5.93 -26.73 -0.16 -1.05 16 3 C -0.11 -0.99 5.17 -26.73 -0.14 -1.13 16 4 C -0.03 -0.28 5.84 -27.88 -0.16 -0.45 16 5 C 0.19 2.58 6.81 -155.41 -1.06 1.52 16 6 N -0.49 -7.74 11.21 -10.81 -0.12 -7.86 16 7 C -0.02 -0.29 11.50 -17.81 -0.20 -0.49 16 8 C 0.01 0.18 4.18 -81.60 -0.34 -0.16 16 9 C 0.11 1.95 4.98 -4.98 -0.02 1.93 16 10 N -0.52 -10.59 4.45 -227.31 -1.01 -11.60 16 11 C 0.19 4.76 4.69 -4.98 -0.02 4.74 16 12 C -0.50 -13.78 8.54 -34.44 -0.29 -14.08 16 13 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 14 C 0.05 1.52 5.46 -17.82 -0.10 1.42 16 15 N -0.90 -26.23 13.29 55.43 0.74 -25.50 16 16 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 17 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 C 0.09 1.73 2.68 -65.86 -0.18 1.55 16 21 C -0.14 -2.32 5.87 -24.55 -0.14 -2.47 16 22 C -0.13 -1.64 6.72 -25.08 -0.17 -1.81 16 23 C -0.12 -1.46 5.96 -25.61 -0.15 -1.61 16 24 C -0.18 -2.72 5.31 -25.61 -0.14 -2.86 16 25 N -0.57 -7.52 3.89 -6.54 -0.03 -7.55 16 26 H 0.41 4.88 4.55 -40.82 -0.19 4.69 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.17 2.62 8.06 -52.49 -0.42 2.20 16 37 H 0.04 0.69 5.40 -51.93 -0.28 0.41 16 38 H 0.09 1.58 7.89 -51.93 -0.41 1.17 16 39 H 0.03 0.70 7.77 -51.93 -0.40 0.30 16 40 H 0.00 -0.03 7.88 -51.93 -0.41 -0.44 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 42 H 0.09 1.98 7.33 -51.93 -0.38 1.60 16 43 H 0.06 1.08 8.14 -51.92 -0.42 0.66 16 44 H 0.10 1.57 2.61 -51.93 -0.14 1.44 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.05 0.47 6.07 -51.93 -0.32 0.15 16 48 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 49 H 0.07 1.06 3.85 -51.93 -0.20 0.86 16 50 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 LS Contribution 374.75 15.07 5.65 5.65 Total: -1.00 -29.76 374.75 -11.31 -41.07 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -8.61 Total: 4.87 kcal Atomic # 6 Polarization: -12.69 SS G_CDS: -2.91 Total: -15.61 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: -0.42 Total: -52.51 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.76 -11.31 -41.07 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141069757.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.243 kcal (2) G-P(sol) polarization free energy of solvation -29.757 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.071 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds