Wall clock time and date at job start Tue Mar 31 2020 08:42:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47322 * 2 1 4 4 C 1.52999 * 109.46963 * 180.02562 * 3 2 1 5 5 C 1.50700 * 109.46928 * 180.02562 * 4 3 2 6 6 N 1.30498 * 125.64895 * 305.02020 * 5 4 3 7 7 C 1.34137 * 109.25234 * 179.73470 * 6 5 4 8 8 C 1.34667 * 108.02319 * 0.39895 * 7 6 5 9 9 C 1.50696 * 126.58969 * 179.87335 * 8 7 6 10 10 N 1.46898 * 109.47321 * 272.81684 * 9 8 7 11 11 C 1.46893 * 111.00350 * 172.27981 * 10 9 8 12 12 C 1.50700 * 109.47486 * 199.59686 * 11 10 9 13 13 H 1.08001 * 119.99419 * 5.10485 * 12 11 10 14 14 C 1.37872 * 119.99925 * 185.10216 * 12 11 10 15 15 N 1.31514 * 120.00735 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00021 * 180.02562 * 14 12 11 17 17 H 1.48504 * 109.46728 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47255 * 119.99775 * 16 14 12 19 19 H 1.48497 * 109.47487 * 240.00548 * 16 14 12 20 20 C 1.46904 * 111.00005 * 296.23300 * 10 9 8 21 21 C 1.55239 * 110.58143 * 77.89931 * 20 10 9 22 22 C 1.54884 * 102.59131 * 203.33768 * 21 20 10 23 23 C 1.54264 * 104.31192 * 37.93411 * 22 21 20 24 24 C 1.53880 * 106.59981 * 336.32227 * 23 22 21 25 25 N 1.35050 * 125.64879 * 124.99706 * 5 4 3 26 26 H 0.96996 * 126.39868 * 0.02562 * 25 5 4 27 27 H 1.09001 * 109.46611 * 300.00165 * 1 2 3 28 28 H 1.08998 * 109.47015 * 59.99522 * 1 2 3 29 29 H 1.08993 * 109.47389 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46611 * 239.99835 * 2 1 3 31 31 H 1.08998 * 109.47015 * 120.00477 * 2 1 3 32 32 H 1.08998 * 109.46921 * 60.00235 * 3 2 1 33 33 H 1.09005 * 109.46798 * 299.99700 * 3 2 1 34 34 H 1.08994 * 109.47891 * 59.99686 * 4 3 2 35 35 H 1.09006 * 109.47082 * 299.99540 * 4 3 2 36 36 H 1.08001 * 125.98446 * 180.24623 * 7 6 5 37 37 H 1.09006 * 109.46999 * 152.81812 * 9 8 7 38 38 H 1.08999 * 109.47299 * 32.82043 * 9 8 7 39 39 H 1.08998 * 109.47023 * 319.59809 * 11 10 9 40 40 H 1.09000 * 109.47273 * 79.59375 * 11 10 9 41 41 H 0.96991 * 120.00742 * 180.02562 * 15 14 12 42 42 H 1.08994 * 110.43559 * 200.48362 * 20 10 9 43 43 H 1.09008 * 110.89748 * 85.04941 * 21 20 10 44 44 H 1.09004 * 110.76727 * 321.57674 * 21 20 10 45 45 H 1.08999 * 110.48975 * 279.19386 * 22 21 20 46 46 H 1.09001 * 110.49003 * 156.67415 * 22 21 20 47 47 H 1.09006 * 110.03621 * 95.60690 * 23 22 21 48 48 H 1.09002 * 110.03626 * 216.99360 * 23 22 21 49 49 H 1.09000 * 110.03297 * 119.28243 * 24 23 22 50 50 H 1.08995 * 110.03360 * 240.66963 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0724 2.8632 0.0000 6 7 3.7519 3.7836 -0.8678 7 6 4.3813 4.9258 -0.5539 8 6 5.1268 4.7023 0.5451 9 6 6.0053 5.7013 1.2531 10 7 7.3396 5.7020 0.6388 11 6 8.1674 6.7885 1.1791 12 6 9.3054 7.0715 0.2325 13 1 9.3578 6.5596 -0.7170 14 6 10.2793 7.9839 0.5786 15 7 10.2157 8.6070 1.7351 16 14 11.6895 8.3353 -0.5950 17 1 11.5316 7.5100 -1.8195 18 1 11.6808 9.7740 -0.9626 19 1 12.9773 8.0005 0.0641 20 6 7.9997 4.4011 0.8123 21 6 7.4375 3.3648 -0.1976 22 6 7.7512 2.0149 0.4940 23 6 7.5048 2.2876 1.9922 24 6 7.6628 3.8048 2.1947 25 7 4.9286 3.3949 0.8989 26 1 5.3285 2.9361 1.6542 27 1 -0.3632 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8932 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9563 -0.8901 34 1 3.9331 0.9287 -0.8907 35 1 3.9337 0.9284 0.8892 36 1 4.3056 5.8602 -1.0902 37 1 6.0898 5.4294 2.3053 38 1 5.5660 6.6953 1.1689 39 1 7.5592 7.6856 1.2946 40 1 8.5668 6.4930 2.1493 41 1 10.9007 9.2491 1.9784 42 1 9.0784 4.5028 0.6934 43 1 7.9523 3.4368 -1.1557 44 1 6.3626 3.4931 -0.3249 45 1 8.7898 1.7313 0.3237 46 1 7.0798 1.2360 0.1326 47 1 6.4968 1.9772 2.2674 48 1 8.2380 1.7515 2.5949 49 1 6.7315 4.2307 2.5680 50 1 8.4726 4.0056 2.8961 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141069757.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:26 Heat of formation + Delta-G solvation = 43.922393 kcal Electronic energy + Delta-G solvation = -26370.900042 eV Core-core repulsion = 23012.236926 eV Total energy + Delta-G solvation = -3358.663116 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -43.49169 -40.01145 -36.70364 -36.40457 -34.65744 -33.38574 -32.58563 -30.50416 -29.78262 -29.17684 -27.75462 -25.95546 -24.66095 -23.51520 -22.13504 -22.02568 -21.48178 -21.03862 -20.31161 -18.50154 -18.07148 -17.37034 -16.86961 -16.55059 -16.39159 -15.99957 -15.52198 -15.18702 -14.83989 -14.61948 -14.49886 -14.27063 -14.17684 -13.92380 -13.82005 -13.58545 -13.17221 -12.96747 -12.86088 -12.58294 -12.45687 -12.25276 -12.16376 -12.11593 -12.02206 -11.93928 -11.75867 -11.74229 -11.47412 -11.39197 -11.36111 -11.22886 -10.85035 -10.61662 -10.58228 -9.13313 -8.90283 -8.20212 -6.30013 1.10827 1.37559 1.39140 1.52241 2.14614 2.23561 2.39389 3.10957 3.30359 3.53897 3.68898 3.71118 3.87773 3.93872 4.02425 4.15321 4.17271 4.30200 4.40393 4.48424 4.49961 4.54043 4.59419 4.60701 4.72392 4.73558 4.78146 4.84131 4.88364 4.92565 4.98452 5.06443 5.08935 5.09791 5.13717 5.18423 5.19791 5.31589 5.34740 5.36469 5.42368 5.48185 5.48697 5.57226 5.67780 5.83839 6.07983 6.39021 6.54549 6.61968 6.86344 7.19810 7.39472 8.89047 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.026122 B = 0.003258 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.624264 B = 8593.351098 C = 8952.410569 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.031 4.031 5 C 0.211 3.789 6 N -0.515 5.515 7 C -0.032 4.032 8 C 0.005 3.995 9 C 0.118 3.882 10 N -0.530 5.530 11 C 0.210 3.790 12 C -0.516 4.516 13 H 0.053 0.947 14 C 0.004 3.996 15 N -0.932 5.932 16 Si 0.963 3.037 17 H -0.269 1.269 18 H -0.277 1.277 19 H -0.278 1.278 20 C 0.087 3.913 21 C -0.138 4.138 22 C -0.118 4.118 23 C -0.110 4.110 24 C -0.172 4.172 25 N -0.555 5.555 26 H 0.423 0.577 27 H 0.051 0.949 28 H 0.048 0.952 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.101 0.899 36 H 0.162 0.838 37 H 0.053 0.947 38 H 0.087 0.913 39 H 0.005 0.995 40 H -0.026 1.026 41 H 0.264 0.736 42 H 0.053 0.947 43 H 0.038 0.962 44 H 0.098 0.902 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.076 0.924 48 H 0.081 0.919 49 H 0.077 0.923 50 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.193 -19.547 1.175 24.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.157 4.157 3 C -0.143 4.143 4 C -0.069 4.069 5 C -0.053 4.053 6 N -0.235 5.235 7 C -0.180 4.180 8 C -0.111 4.111 9 C -0.011 4.011 10 N -0.253 5.253 11 C 0.084 3.916 12 C -0.554 4.554 13 H 0.072 0.928 14 C -0.194 4.194 15 N -0.573 5.573 16 Si 0.788 3.212 17 H -0.193 1.193 18 H -0.203 1.203 19 H -0.204 1.204 20 C -0.022 4.022 21 C -0.176 4.176 22 C -0.155 4.155 23 C -0.148 4.148 24 C -0.211 4.211 25 N -0.165 5.165 26 H 0.267 0.733 27 H 0.070 0.930 28 H 0.068 0.932 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.073 0.927 33 H 0.075 0.925 34 H 0.115 0.885 35 H 0.120 0.880 36 H 0.180 0.820 37 H 0.070 0.930 38 H 0.105 0.895 39 H 0.023 0.977 40 H -0.008 1.008 41 H 0.073 0.927 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.116 0.884 45 H 0.083 0.917 46 H 0.102 0.898 47 H 0.094 0.906 48 H 0.100 0.900 49 H 0.095 0.905 50 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -14.693 -19.376 0.092 24.317 hybrid contribution 2.012 1.046 1.375 2.652 sum -12.681 -18.330 1.467 22.337 Atomic orbital electron populations 1.21778 0.95865 1.01953 1.01605 1.21512 0.95960 0.95396 1.02881 1.21453 0.93007 0.97761 1.02070 1.20193 0.96559 0.85221 1.04975 1.23740 0.94600 0.98283 0.88641 1.70170 1.26323 1.00130 1.26878 1.22105 1.00353 0.98143 0.97380 1.20710 1.03593 0.85766 1.00990 1.20630 0.88581 0.96674 0.95170 1.62205 1.01767 1.03775 1.57507 1.19373 0.91239 0.88406 0.92594 1.21420 1.07832 1.22802 1.03371 0.92833 1.25811 1.00766 0.95821 0.96955 1.70062 1.36058 1.28269 1.22872 0.85426 0.78716 0.78071 0.78971 1.19321 1.20279 1.20354 1.22480 0.97503 0.88365 0.93843 1.23198 1.03405 0.94077 0.96953 1.22322 1.01993 0.96483 0.94752 1.22089 1.01999 0.93849 0.96904 1.23027 1.02078 0.97638 0.98320 1.43675 1.37069 1.09730 1.26006 0.73301 0.92993 0.93237 0.91909 0.91279 0.90826 0.92660 0.92456 0.88495 0.88046 0.82012 0.92954 0.89512 0.97712 1.00849 0.92716 0.92850 0.94295 0.88382 0.91746 0.89796 0.90602 0.90029 0.90538 0.93125 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.91 71.98 0.71 -1.05 16 2 C -0.12 -1.33 5.93 30.59 0.18 -1.15 16 3 C -0.10 -1.61 5.17 30.59 0.16 -1.45 16 4 C -0.03 -0.48 5.84 29.85 0.17 -0.30 16 5 C 0.21 5.12 6.81 138.13 0.94 6.06 16 6 N -0.51 -15.88 11.21 -188.12 -2.11 -17.99 16 7 C -0.03 -1.05 11.50 83.52 0.96 -0.09 16 8 C 0.00 0.14 4.18 40.95 0.17 0.31 16 9 C 0.12 4.13 4.98 85.56 0.43 4.56 16 10 N -0.53 -22.57 4.45 -873.08 -3.88 -26.45 16 11 C 0.21 11.00 4.69 85.56 0.40 11.40 16 12 C -0.52 -29.54 8.54 25.60 0.22 -29.32 16 13 H 0.05 3.11 7.81 -2.91 -0.02 3.09 16 14 C 0.00 0.26 5.46 84.65 0.46 0.72 16 15 N -0.93 -55.77 13.29 21.45 0.28 -55.48 16 16 Si 0.96 45.02 29.54 68.60 2.03 47.05 16 17 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 18 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 20 C 0.09 3.30 2.68 46.11 0.12 3.42 16 21 C -0.14 -4.44 5.87 32.01 0.19 -4.25 16 22 C -0.12 -2.73 6.72 31.67 0.21 -2.52 16 23 C -0.11 -2.32 5.96 31.32 0.19 -2.13 16 24 C -0.17 -5.15 5.31 31.32 0.17 -4.99 16 25 N -0.56 -13.47 3.89 -174.60 -0.68 -14.15 16 26 H 0.42 8.45 4.55 -92.71 -0.42 8.03 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 34 H 0.10 1.40 8.14 -2.39 -0.02 1.38 16 35 H 0.10 1.02 8.14 -2.38 -0.02 1.00 16 36 H 0.16 5.29 8.06 -2.91 -0.02 5.26 16 37 H 0.05 1.73 5.40 -2.38 -0.01 1.71 16 38 H 0.09 3.10 7.89 -2.39 -0.02 3.08 16 39 H 0.00 0.27 7.77 -2.39 -0.02 0.25 16 40 H -0.03 -1.48 7.88 -2.39 -0.02 -1.50 16 41 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 42 H 0.05 2.41 7.33 -2.39 -0.02 2.40 16 43 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 44 H 0.10 3.12 2.61 -2.39 -0.01 3.11 16 45 H 0.06 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 47 H 0.08 1.16 6.07 -2.38 -0.01 1.15 16 48 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.08 2.20 3.85 -2.39 -0.01 2.19 16 50 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -67.20 374.75 1.82 -65.38 By element: Atomic # 1 Polarization: 21.96 SS G_CDS: 0.49 Total: 22.45 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: 5.69 Total: -20.80 kcal Atomic # 7 Polarization: -107.69 SS G_CDS: -6.39 Total: -114.08 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.05 kcal Total: -67.20 1.82 -65.38 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141069757.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.300 kcal (2) G-P(sol) polarization free energy of solvation -67.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.820 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds