Wall clock time and date at job start Tue Mar 31 2020 08:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46993 * 2 1 4 4 C 1.52993 * 109.47357 * 239.99685 * 2 1 3 5 5 C 1.50700 * 109.46932 * 119.99640 * 2 1 3 6 6 N 1.36881 * 126.59158 * 354.83440 * 5 2 1 7 7 H 0.97001 * 126.40122 * 359.69855 * 6 5 2 8 8 C 1.35041 * 107.20712 * 179.97438 * 6 5 2 9 9 N 1.30503 * 108.69746 * 359.97438 * 8 6 5 10 10 C 1.34124 * 109.26027 * 0.02562 * 9 8 6 11 11 C 1.50700 * 125.99537 * 180.02562 * 10 9 8 12 12 N 1.46897 * 109.47048 * 93.84914 * 11 10 9 13 13 C 1.46903 * 110.99639 * 174.23784 * 12 11 10 14 14 C 1.50701 * 109.47240 * 183.67620 * 13 12 11 15 15 H 1.08006 * 119.99762 * 5.19226 * 14 13 12 16 16 C 1.37876 * 120.00039 * 185.19585 * 14 13 12 17 17 N 1.31516 * 119.99528 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00026 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47224 * 90.00081 * 18 16 14 20 20 H 1.48508 * 109.46920 * 209.99887 * 18 16 14 21 21 H 1.48501 * 109.46953 * 329.99660 * 18 16 14 22 22 C 1.46899 * 111.00331 * 298.19220 * 12 11 10 23 23 C 1.54266 * 110.03264 * 267.78879 * 22 12 11 24 24 C 1.54965 * 104.15878 * 217.13548 * 23 22 12 25 25 C 1.54895 * 102.77879 * 37.88869 * 24 23 22 26 26 C 1.53881 * 110.03006 * 150.56801 * 22 12 11 27 27 H 1.08999 * 109.47538 * 300.00014 * 1 2 3 28 28 H 1.09005 * 109.47036 * 60.00296 * 1 2 3 29 29 H 1.08996 * 109.47561 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46741 * 185.18813 * 3 2 1 31 31 H 1.08999 * 109.46921 * 305.18875 * 3 2 1 32 32 H 1.09003 * 109.47275 * 65.19170 * 3 2 1 33 33 H 1.08997 * 109.47466 * 304.37072 * 4 2 1 34 34 H 1.09006 * 109.47255 * 64.36994 * 4 2 1 35 35 H 1.09000 * 109.47548 * 184.36413 * 4 2 1 36 36 H 1.07996 * 125.65508 * 179.97438 * 8 6 5 37 37 H 1.09002 * 109.47115 * 213.85637 * 11 10 9 38 38 H 1.09001 * 109.46556 * 333.84851 * 11 10 9 39 39 H 1.08998 * 109.47196 * 303.67856 * 13 12 11 40 40 H 1.09000 * 109.46723 * 63.67880 * 13 12 11 41 41 H 0.97009 * 119.99639 * 180.02562 * 17 16 14 42 42 H 1.09000 * 110.01227 * 29.18303 * 22 12 11 43 43 H 1.08996 * 110.48463 * 335.77852 * 23 22 12 44 44 H 1.08993 * 110.48507 * 98.42672 * 23 22 12 45 45 H 1.09001 * 110.72326 * 279.57780 * 24 23 22 46 46 H 1.08995 * 110.92452 * 156.29229 * 24 23 22 47 47 H 1.08993 * 110.49200 * 203.41108 * 25 24 23 48 48 H 1.09002 * 110.60226 * 80.81398 * 25 24 23 49 49 H 1.08994 * 110.03207 * 238.56819 * 26 22 12 50 50 H 1.09001 * 110.03186 * 0.02562 * 26 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0322 -0.7103 1.2305 6 7 1.2722 -1.1916 2.2622 7 1 0.3070 -1.1359 2.3409 8 6 2.1176 -1.7532 3.1531 9 7 3.3377 -1.6318 2.7060 10 6 3.3151 -0.9944 1.5261 11 6 4.5147 -0.6563 0.6789 12 7 4.7297 -1.7193 -0.3119 13 6 5.8068 -1.3599 -1.2441 14 6 5.9375 -2.4299 -2.2972 15 1 5.2326 -3.2478 -2.3265 16 6 6.9568 -2.3648 -3.2233 17 7 7.0711 -3.2989 -4.1421 18 14 8.1763 -0.9507 -3.1722 19 1 9.3235 -1.3176 -2.3037 20 1 8.6655 -0.6691 -4.5458 21 1 7.5092 0.2586 -2.6266 22 6 5.0087 -3.0031 0.3452 23 6 6.5304 -3.1892 0.5168 24 6 6.7574 -4.7023 0.2705 25 6 5.7611 -5.0165 -0.8731 26 6 4.5194 -4.1645 -0.5378 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1259 1.4439 -0.0929 31 1 1.6027 1.9825 -0.8399 32 1 1.7545 1.9289 0.9328 33 1 1.6142 -1.7238 -1.2892 34 1 1.7420 -0.1643 -2.1375 35 1 3.1272 -0.7895 -1.2109 36 1 1.8316 -2.2246 4.0816 37 1 4.3421 0.2896 0.1656 38 1 5.3956 -0.5689 1.3150 39 1 5.5725 -0.4080 -1.7204 40 1 6.7457 -1.2715 -0.6975 41 1 7.7885 -3.2533 -4.7935 42 1 4.5161 -3.0396 1.3169 43 1 7.0727 -2.5974 -0.2205 44 1 6.8366 -2.9162 1.5266 45 1 6.5151 -5.2790 1.1632 46 1 7.7823 -4.8956 -0.0461 47 1 5.5066 -6.0763 -0.8770 48 1 6.1773 -4.7214 -1.8363 49 1 3.7902 -4.7652 0.0057 50 1 4.0754 -3.7755 -1.4541 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142227021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:21 Heat of formation + Delta-G solvation = 74.867987 kcal Electronic energy + Delta-G solvation = -27779.224152 eV Core-core repulsion = 24421.902938 eV Total energy + Delta-G solvation = -3357.321214 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.03988 -38.57713 -36.62186 -34.40006 -32.68831 -31.94244 -29.48543 -27.89489 -27.70010 -27.24579 -26.82291 -26.57130 -23.87346 -21.90310 -21.39737 -20.42671 -19.59137 -19.03943 -17.94873 -17.37529 -16.84736 -15.31934 -15.20522 -14.69362 -14.50586 -14.37884 -14.08395 -13.82999 -13.42003 -13.37706 -13.14736 -12.91442 -12.38497 -12.29696 -12.04997 -11.99148 -11.73934 -11.40375 -11.33412 -11.12198 -10.89157 -10.77363 -10.63478 -10.43920 -10.27329 -10.14951 -9.99698 -9.98091 -9.87203 -9.62728 -9.55803 -9.28710 -9.24192 -8.67940 -8.44353 -7.95891 -7.11557 -5.94929 -3.89942 2.27282 3.27034 3.32930 3.35689 3.41761 3.44185 4.50105 4.67396 4.82825 4.91282 5.02301 5.12042 5.36138 5.36878 5.50745 5.51180 5.57870 5.68689 5.71848 5.75953 5.81318 5.97479 5.98953 6.00990 6.10469 6.26782 6.36218 6.39133 6.42271 6.43628 6.53336 6.58511 6.61617 6.64951 6.71949 6.80566 6.87894 6.94291 7.00338 7.01844 7.11040 7.20240 7.38202 7.46236 7.56808 7.70071 7.77937 8.08883 8.25733 8.36883 8.77364 9.18885 9.67391 11.15941 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.015239 B = 0.005744 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.927562 B = 4873.719960 C = 5722.628781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.012 3.988 3 C -0.140 4.140 4 C -0.155 4.155 5 C 0.010 3.990 6 N -0.571 5.571 7 H 0.413 0.587 8 C 0.168 3.832 9 N -0.485 5.485 10 C 0.025 3.975 11 C 0.126 3.874 12 N -0.512 5.512 13 C 0.151 3.849 14 C -0.508 4.508 15 H 0.108 0.892 16 C 0.071 3.929 17 N -0.900 5.900 18 Si 0.860 3.140 19 H -0.280 1.280 20 H -0.289 1.289 21 H -0.268 1.268 22 C 0.096 3.904 23 C -0.160 4.160 24 C -0.110 4.110 25 C -0.126 4.126 26 C -0.100 4.100 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.060 0.940 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.047 0.953 35 H 0.115 0.885 36 H 0.201 0.799 37 H 0.080 0.920 38 H 0.034 0.966 39 H 0.023 0.977 40 H -0.005 1.005 41 H 0.261 0.739 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.037 0.963 45 H 0.042 0.958 46 H 0.052 0.948 47 H 0.035 0.965 48 H 0.107 0.893 49 H 0.030 0.970 50 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.245 5.374 11.179 17.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.010 3.990 3 C -0.197 4.197 4 C -0.212 4.212 5 C -0.106 4.106 6 N -0.175 5.175 7 H 0.250 0.750 8 C -0.115 4.115 9 N -0.204 5.204 10 C -0.103 4.103 11 C -0.003 4.003 12 N -0.235 5.235 13 C 0.025 3.975 14 C -0.545 4.545 15 H 0.125 0.875 16 C -0.130 4.130 17 N -0.540 5.540 18 Si 0.688 3.312 19 H -0.206 1.206 20 H -0.215 1.215 21 H -0.193 1.193 22 C -0.012 4.012 23 C -0.198 4.198 24 C -0.148 4.148 25 C -0.163 4.163 26 C -0.138 4.138 27 H 0.066 0.934 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.079 0.921 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.133 0.867 36 H 0.217 0.783 37 H 0.098 0.902 38 H 0.053 0.947 39 H 0.041 0.959 40 H 0.013 0.987 41 H 0.071 0.929 42 H 0.092 0.908 43 H 0.121 0.879 44 H 0.056 0.944 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.053 0.947 48 H 0.126 0.874 49 H 0.048 0.952 50 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -11.800 4.991 11.150 16.985 hybrid contribution 0.205 1.007 0.339 1.082 sum -11.595 5.998 11.490 17.391 Atomic orbital electron populations 1.21965 0.95252 1.01577 1.01771 1.19023 0.94211 0.94474 0.91278 1.21939 1.02286 0.94313 1.01164 1.22254 1.06873 0.98734 0.93338 1.20928 0.91461 1.05841 0.92356 1.43196 1.10153 1.46062 1.18050 0.75005 1.24750 0.85409 1.03693 0.97672 1.70158 1.21116 1.17911 1.11251 1.20280 0.93377 1.02823 0.93851 1.20442 0.92112 0.95807 0.91922 1.62330 1.44774 1.01091 1.15297 1.20404 0.87976 0.97612 0.91470 1.21539 1.13469 1.09381 1.10154 0.87453 1.24833 0.97298 0.95329 0.95510 1.69861 1.32844 1.33614 1.17680 0.87094 0.82499 0.84372 0.77220 1.20595 1.21538 1.19304 1.22123 0.93586 0.89442 0.96065 1.23200 0.98836 0.97476 1.00270 1.22234 0.98958 0.96046 0.97534 1.22565 0.95717 0.96699 1.01365 1.22168 0.96620 0.94998 1.00022 0.93416 0.91691 0.92716 0.91471 0.92137 0.93291 0.93139 0.93369 0.86700 0.78267 0.90220 0.94741 0.95883 0.98738 0.92928 0.90802 0.87871 0.94402 0.93888 0.92956 0.94651 0.87429 0.95157 0.89597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 7.63 37.16 0.28 -1.16 16 2 C 0.01 0.15 0.78 -155.66 -0.12 0.02 16 3 C -0.14 -1.63 8.32 37.16 0.31 -1.32 16 4 C -0.15 -2.33 8.34 37.15 0.31 -2.02 16 5 C 0.01 0.14 5.58 -81.60 -0.46 -0.32 16 6 N -0.57 -6.36 5.88 -10.30 -0.06 -6.42 16 7 H 0.41 3.20 8.12 -40.82 -0.33 2.87 16 8 C 0.17 2.07 13.04 -90.37 -1.18 0.89 16 9 N -0.48 -7.96 10.10 -10.87 -0.11 -8.07 16 10 C 0.03 0.42 5.41 -82.85 -0.45 -0.03 16 11 C 0.13 2.26 4.31 -4.98 -0.02 2.24 16 12 N -0.51 -10.22 2.37 -228.17 -0.54 -10.76 16 13 C 0.15 3.44 3.18 -4.97 -0.02 3.42 16 14 C -0.51 -13.02 6.27 -34.44 -0.22 -13.23 16 15 H 0.11 2.91 3.47 -52.48 -0.18 2.73 16 16 C 0.07 1.93 5.47 -17.82 -0.10 1.83 16 17 N -0.90 -25.98 13.96 55.43 0.77 -25.21 16 18 Si 0.86 20.84 27.37 -169.99 -4.65 16.19 16 19 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 21 H -0.27 -6.27 6.69 56.52 0.38 -5.89 16 22 C 0.10 1.95 2.71 -66.59 -0.18 1.77 16 23 C -0.16 -3.31 5.72 -25.03 -0.14 -3.45 16 24 C -0.11 -2.17 6.91 -24.69 -0.17 -2.35 16 25 C -0.13 -2.66 6.18 -25.07 -0.15 -2.81 16 26 C -0.10 -2.07 5.65 -25.61 -0.14 -2.22 16 27 H 0.05 0.40 7.97 -51.93 -0.41 -0.02 16 28 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.86 5.59 -51.93 -0.29 0.57 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.11 2.05 3.95 -51.93 -0.21 1.84 16 36 H 0.20 1.63 8.06 -52.49 -0.42 1.20 16 37 H 0.08 1.34 5.06 -51.93 -0.26 1.07 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.02 0.53 7.52 -51.93 -0.39 0.14 16 40 H 0.00 -0.11 4.95 -51.93 -0.26 -0.37 16 41 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.07 1.51 5.75 -51.93 -0.30 1.22 16 43 H 0.10 2.38 4.09 -51.93 -0.21 2.17 16 44 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 47 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.11 2.67 5.97 -51.93 -0.31 2.36 16 49 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.09 1.96 5.89 -51.93 -0.31 1.65 16 LS Contribution 358.50 15.07 5.40 5.40 Total: -1.00 -29.36 358.50 -9.75 -39.11 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -8.11 Total: 8.50 kcal Atomic # 6 Polarization: -16.30 SS G_CDS: -2.45 Total: -18.74 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.06 Total: -50.46 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.65 Total: 16.19 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -29.36 -9.75 -39.11 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142227021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.978 kcal (2) G-P(sol) polarization free energy of solvation -29.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds