Wall clock time and date at job start Tue Mar 31 2020 08:42:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.46993 * 2 1 4 4 C 1.52993 * 109.47357 * 239.99685 * 2 1 3 5 5 C 1.50700 * 109.46932 * 119.99640 * 2 1 3 6 6 N 1.36881 * 126.59158 * 354.83440 * 5 2 1 7 7 H 0.97001 * 126.40122 * 359.69855 * 6 5 2 8 8 C 1.35041 * 107.20712 * 179.97438 * 6 5 2 9 9 N 1.30503 * 108.69746 * 359.97438 * 8 6 5 10 10 C 1.34124 * 109.26027 * 0.02562 * 9 8 6 11 11 C 1.50700 * 125.99537 * 180.02562 * 10 9 8 12 12 N 1.46897 * 109.47048 * 93.84914 * 11 10 9 13 13 C 1.46903 * 110.99639 * 174.23784 * 12 11 10 14 14 C 1.50701 * 109.47240 * 183.67620 * 13 12 11 15 15 H 1.08006 * 119.99762 * 5.19226 * 14 13 12 16 16 C 1.37876 * 120.00039 * 185.19585 * 14 13 12 17 17 N 1.31516 * 119.99528 * 179.97438 * 16 14 13 18 18 Si 1.86797 * 120.00026 * 0.02562 * 16 14 13 19 19 H 1.48492 * 109.47224 * 90.00081 * 18 16 14 20 20 H 1.48508 * 109.46920 * 209.99887 * 18 16 14 21 21 H 1.48501 * 109.46953 * 329.99660 * 18 16 14 22 22 C 1.46899 * 111.00331 * 298.19220 * 12 11 10 23 23 C 1.54266 * 110.03264 * 267.78879 * 22 12 11 24 24 C 1.54965 * 104.15878 * 217.13548 * 23 22 12 25 25 C 1.54895 * 102.77879 * 37.88869 * 24 23 22 26 26 C 1.53881 * 110.03006 * 150.56801 * 22 12 11 27 27 H 1.08999 * 109.47538 * 300.00014 * 1 2 3 28 28 H 1.09005 * 109.47036 * 60.00296 * 1 2 3 29 29 H 1.08996 * 109.47561 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.46741 * 185.18813 * 3 2 1 31 31 H 1.08999 * 109.46921 * 305.18875 * 3 2 1 32 32 H 1.09003 * 109.47275 * 65.19170 * 3 2 1 33 33 H 1.08997 * 109.47466 * 304.37072 * 4 2 1 34 34 H 1.09006 * 109.47255 * 64.36994 * 4 2 1 35 35 H 1.09000 * 109.47548 * 184.36413 * 4 2 1 36 36 H 1.07996 * 125.65508 * 179.97438 * 8 6 5 37 37 H 1.09002 * 109.47115 * 213.85637 * 11 10 9 38 38 H 1.09001 * 109.46556 * 333.84851 * 11 10 9 39 39 H 1.08998 * 109.47196 * 303.67856 * 13 12 11 40 40 H 1.09000 * 109.46723 * 63.67880 * 13 12 11 41 41 H 0.97009 * 119.99639 * 180.02562 * 17 16 14 42 42 H 1.09000 * 110.01227 * 29.18303 * 22 12 11 43 43 H 1.08996 * 110.48463 * 335.77852 * 23 22 12 44 44 H 1.08993 * 110.48507 * 98.42672 * 23 22 12 45 45 H 1.09001 * 110.72326 * 279.57780 * 24 23 22 46 46 H 1.08995 * 110.92452 * 156.29229 * 24 23 22 47 47 H 1.08993 * 110.49200 * 203.41108 * 25 24 23 48 48 H 1.09002 * 110.60226 * 80.81398 * 25 24 23 49 49 H 1.08994 * 110.03207 * 238.56819 * 26 22 12 50 50 H 1.09001 * 110.03186 * 0.02562 * 26 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7213 -1.2491 5 6 2.0322 -0.7103 1.2305 6 7 1.2722 -1.1916 2.2622 7 1 0.3070 -1.1359 2.3409 8 6 2.1176 -1.7532 3.1531 9 7 3.3377 -1.6318 2.7060 10 6 3.3151 -0.9944 1.5261 11 6 4.5147 -0.6563 0.6789 12 7 4.7297 -1.7193 -0.3119 13 6 5.8068 -1.3599 -1.2441 14 6 5.9375 -2.4299 -2.2972 15 1 5.2326 -3.2478 -2.3265 16 6 6.9568 -2.3648 -3.2233 17 7 7.0711 -3.2989 -4.1421 18 14 8.1763 -0.9507 -3.1722 19 1 9.3235 -1.3176 -2.3037 20 1 8.6655 -0.6691 -4.5458 21 1 7.5092 0.2586 -2.6266 22 6 5.0087 -3.0031 0.3452 23 6 6.5304 -3.1892 0.5168 24 6 6.7574 -4.7023 0.2705 25 6 5.7611 -5.0165 -0.8731 26 6 4.5194 -4.1645 -0.5378 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1259 1.4439 -0.0929 31 1 1.6027 1.9825 -0.8399 32 1 1.7545 1.9289 0.9328 33 1 1.6142 -1.7238 -1.2892 34 1 1.7420 -0.1643 -2.1375 35 1 3.1272 -0.7895 -1.2109 36 1 1.8316 -2.2246 4.0816 37 1 4.3421 0.2896 0.1656 38 1 5.3956 -0.5689 1.3150 39 1 5.5725 -0.4080 -1.7204 40 1 6.7457 -1.2715 -0.6975 41 1 7.7885 -3.2533 -4.7935 42 1 4.5161 -3.0396 1.3169 43 1 7.0727 -2.5974 -0.2205 44 1 6.8366 -2.9162 1.5266 45 1 6.5151 -5.2790 1.1632 46 1 7.7823 -4.8956 -0.0461 47 1 5.5066 -6.0763 -0.8770 48 1 6.1773 -4.7214 -1.8363 49 1 3.7902 -4.7652 0.0057 50 1 4.0754 -3.7755 -1.4541 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142227021.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:42:21 Heat of formation + Delta-G solvation = 59.581133 kcal Electronic energy + Delta-G solvation = -27779.887040 eV Core-core repulsion = 24421.902938 eV Total energy + Delta-G solvation = -3357.984102 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -43.08701 -40.24072 -37.63092 -35.93592 -34.58752 -33.27590 -30.84105 -29.57160 -29.41733 -28.19464 -28.03293 -27.83939 -25.45293 -23.23625 -22.92618 -21.51289 -21.25452 -20.31345 -19.58455 -18.82789 -18.24665 -16.89955 -16.76267 -16.12038 -15.89676 -15.51311 -15.44103 -15.23772 -15.07517 -14.51070 -14.45352 -14.33302 -13.99558 -13.83712 -13.23079 -13.14016 -13.07606 -12.97172 -12.74455 -12.46545 -12.37944 -12.16713 -12.10863 -11.83243 -11.79674 -11.76359 -11.68557 -11.59950 -11.45437 -11.16073 -10.98610 -10.76768 -10.65381 -10.55923 -10.51068 -9.07533 -8.73393 -8.06017 -6.02911 1.24847 1.36989 1.41592 1.48152 2.22240 2.38197 2.46480 3.26590 3.43708 3.75556 3.90378 3.98255 4.02613 4.03482 4.15124 4.28565 4.32197 4.48937 4.51491 4.67097 4.75239 4.75333 4.83377 4.85378 4.87778 4.90940 4.96490 4.99948 5.05999 5.07808 5.12011 5.15004 5.18567 5.19542 5.23648 5.25113 5.34567 5.38625 5.40687 5.57533 5.60882 5.69350 5.78084 5.86253 5.92341 5.96309 6.27578 6.58013 6.72902 6.85921 7.08794 7.30812 7.57182 9.06898 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.015239 B = 0.005744 C = 0.004892 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1836.927562 B = 4873.719960 C = 5722.628781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.013 3.987 3 C -0.137 4.137 4 C -0.152 4.152 5 C 0.015 3.985 6 N -0.556 5.556 7 H 0.432 0.568 8 C 0.184 3.816 9 N -0.529 5.529 10 C -0.006 4.006 11 C 0.131 3.869 12 N -0.508 5.508 13 C 0.160 3.840 14 C -0.491 4.491 15 H 0.089 0.911 16 C 0.022 3.978 17 N -0.941 5.941 18 Si 0.910 3.090 19 H -0.280 1.280 20 H -0.292 1.292 21 H -0.254 1.254 22 C 0.103 3.897 23 C -0.159 4.159 24 C -0.104 4.104 25 C -0.123 4.123 26 C -0.093 4.093 27 H 0.068 0.932 28 H 0.072 0.928 29 H 0.055 0.945 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.060 0.940 33 H 0.035 0.965 34 H 0.054 0.946 35 H 0.086 0.914 36 H 0.242 0.758 37 H 0.086 0.914 38 H 0.018 0.982 39 H 0.021 0.979 40 H -0.009 1.009 41 H 0.258 0.742 42 H 0.079 0.921 43 H 0.076 0.924 44 H 0.048 0.952 45 H 0.069 0.931 46 H 0.048 0.952 47 H 0.052 0.948 48 H 0.065 0.935 49 H 0.046 0.954 50 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.341 6.278 13.508 20.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.012 3.988 3 C -0.194 4.194 4 C -0.209 4.209 5 C -0.103 4.103 6 N -0.161 5.161 7 H 0.273 0.727 8 C -0.100 4.100 9 N -0.250 5.250 10 C -0.134 4.134 11 C 0.003 3.997 12 N -0.231 5.231 13 C 0.034 3.966 14 C -0.530 4.530 15 H 0.107 0.893 16 C -0.175 4.175 17 N -0.584 5.584 18 Si 0.737 3.263 19 H -0.206 1.206 20 H -0.218 1.218 21 H -0.178 1.178 22 C -0.006 4.006 23 C -0.197 4.197 24 C -0.142 4.142 25 C -0.161 4.161 26 C -0.130 4.130 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.079 0.921 33 H 0.054 0.946 34 H 0.073 0.927 35 H 0.105 0.895 36 H 0.258 0.742 37 H 0.104 0.896 38 H 0.037 0.963 39 H 0.039 0.961 40 H 0.008 0.992 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.095 0.905 44 H 0.067 0.933 45 H 0.087 0.913 46 H 0.067 0.933 47 H 0.071 0.929 48 H 0.084 0.916 49 H 0.065 0.935 50 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.932 5.918 13.497 20.281 hybrid contribution 0.761 0.677 -0.320 1.068 sum -13.171 6.595 13.177 19.764 Atomic orbital electron populations 1.21917 0.92677 1.02142 1.03271 1.19015 0.96220 0.94289 0.89296 1.21911 1.01160 0.93991 1.02385 1.22156 1.04915 0.98512 0.95361 1.20992 0.91031 1.05180 0.93055 1.43126 1.11079 1.44964 1.16913 0.72725 1.25522 0.84367 1.01807 0.98322 1.70078 1.23592 1.19558 1.11739 1.20049 0.93626 1.05126 0.94562 1.20369 0.92659 0.95309 0.91359 1.62277 1.43144 1.01776 1.15903 1.20192 0.88751 0.96317 0.91388 1.21717 1.12132 1.09066 1.10042 0.89316 1.25428 0.99154 0.97321 0.95605 1.69992 1.33842 1.35619 1.18916 0.86276 0.80650 0.82495 0.76913 1.20632 1.21791 1.17815 1.22065 0.93182 0.89350 0.95983 1.23129 0.98846 0.97769 0.99964 1.22217 0.98377 0.95684 0.97910 1.22423 0.96136 0.97724 0.99788 1.22067 0.96579 0.95341 0.99058 0.91286 0.90904 0.92620 0.93274 0.90766 0.92130 0.94605 0.92686 0.89549 0.74193 0.89608 0.96335 0.96091 0.99176 0.93280 0.90321 0.90538 0.93339 0.91285 0.93335 0.92926 0.91603 0.93515 0.92248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 7.63 71.98 0.55 -1.76 16 2 C 0.01 0.31 0.78 -52.93 -0.04 0.26 16 3 C -0.14 -2.92 8.32 71.98 0.60 -2.32 16 4 C -0.15 -4.51 8.34 71.98 0.60 -3.91 16 5 C 0.01 0.38 5.58 40.95 0.23 0.61 16 6 N -0.56 -10.45 5.88 -186.49 -1.10 -11.55 16 7 H 0.43 4.82 8.12 -92.71 -0.75 4.07 16 8 C 0.18 3.89 13.04 180.26 2.35 6.24 16 9 N -0.53 -16.37 10.10 -188.32 -1.90 -18.27 16 10 C -0.01 -0.19 5.41 41.39 0.22 0.03 16 11 C 0.13 4.73 4.31 85.56 0.37 5.10 16 12 N -0.51 -20.57 2.37 -875.80 -2.07 -22.65 16 13 C 0.16 7.42 3.18 85.56 0.27 7.69 16 14 C -0.49 -26.04 6.27 25.60 0.16 -25.88 16 15 H 0.09 5.03 3.47 -2.91 -0.01 5.02 16 16 C 0.02 1.20 5.47 84.65 0.46 1.67 16 17 N -0.94 -56.42 13.96 21.45 0.30 -56.12 16 18 Si 0.91 43.77 27.37 68.60 1.88 45.65 16 19 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 20 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 21 H -0.25 -11.52 6.69 99.48 0.67 -10.86 16 22 C 0.10 4.15 2.71 45.64 0.12 4.28 16 23 C -0.16 -6.57 5.72 31.70 0.18 -6.39 16 24 C -0.10 -4.06 6.91 31.91 0.22 -3.84 16 25 C -0.12 -5.25 6.18 31.67 0.20 -5.05 16 26 C -0.09 -3.85 5.65 31.32 0.18 -3.67 16 27 H 0.07 0.84 7.97 -2.39 -0.02 0.82 16 28 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 29 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.05 1.22 5.59 -2.39 -0.01 1.21 16 31 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 34 H 0.05 1.50 8.14 -2.38 -0.02 1.48 16 35 H 0.09 3.11 3.95 -2.39 -0.01 3.10 16 36 H 0.24 2.77 8.06 -2.91 -0.02 2.74 16 37 H 0.09 2.91 5.06 -2.39 -0.01 2.90 16 38 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 39 H 0.02 0.99 7.52 -2.39 -0.02 0.97 16 40 H -0.01 -0.43 4.95 -2.39 -0.01 -0.44 16 41 H 0.26 14.86 8.31 -92.70 -0.77 14.09 16 42 H 0.08 3.16 5.75 -2.39 -0.01 3.14 16 43 H 0.08 3.60 4.09 -2.39 -0.01 3.59 16 44 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 46 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 48 H 0.07 3.40 5.97 -2.39 -0.01 3.39 16 49 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 50 H 0.06 2.79 5.89 -2.39 -0.01 2.78 16 Total: -1.00 -65.84 358.50 3.93 -61.91 By element: Atomic # 1 Polarization: 27.83 SS G_CDS: 0.15 Total: 27.98 kcal Atomic # 6 Polarization: -33.63 SS G_CDS: 6.67 Total: -26.96 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -4.77 Total: -108.58 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.88 Total: 45.65 kcal Total: -65.84 3.93 -61.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142227021.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.487 kcal (2) G-P(sol) polarization free energy of solvation -65.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds