Wall clock time and date at job start Tue Mar 31 2020 09:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36941 * 120.00208 * 2 1 4 4 H 1.07999 * 119.99754 * 200.37527 * 3 2 1 5 5 C 1.38811 * 119.99730 * 20.36614 * 3 2 1 6 6 N 1.31619 * 120.00347 * 14.98413 * 5 3 2 7 7 Si 1.86802 * 120.00003 * 194.98648 * 5 3 2 8 8 H 1.48500 * 109.47336 * 85.00008 * 7 5 3 9 9 H 1.48493 * 109.47420 * 205.00588 * 7 5 3 10 10 H 1.48502 * 109.46996 * 325.00534 * 7 5 3 11 11 C 1.46504 * 120.00071 * 179.97438 * 2 1 3 12 12 C 1.50702 * 109.47148 * 270.00049 * 11 2 1 13 13 C 1.34849 * 125.88085 * 94.99597 * 12 11 2 14 14 C 1.40929 * 107.42143 * 180.26325 * 13 12 11 15 15 I 2.09498 * 126.29300 * 179.73952 * 14 13 12 16 16 C 1.34889 * 107.40802 * 359.57435 * 14 13 12 17 17 N 1.36336 * 125.88584 * 275.00010 * 12 11 2 18 18 H 0.97001 * 125.63358 * 359.96549 * 17 12 11 19 19 H 1.09002 * 109.47314 * 275.10259 * 1 2 3 20 20 H 1.09006 * 109.47094 * 35.10404 * 1 2 3 21 21 H 1.09000 * 109.47338 * 155.10014 * 1 2 3 22 22 H 0.96997 * 120.00385 * 179.97438 * 6 5 3 23 23 H 1.09001 * 109.47244 * 150.00377 * 11 2 1 24 24 H 1.08991 * 109.46816 * 30.00031 * 11 2 1 25 25 H 1.07998 * 126.29405 * 0.02562 * 13 12 11 26 26 H 1.07996 * 125.89117 * 180.19479 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1790 1.2151 -0.3256 5 6 1.5207 2.3505 0.4184 6 7 0.3876 2.2836 1.0846 7 14 2.2825 4.0127 0.0358 8 1 1.8683 4.4461 -1.3228 9 1 1.8225 5.0099 1.0353 10 1 3.7624 3.9033 0.0907 11 6 2.1975 -1.2687 0.0006 12 6 2.4487 -1.7032 1.4216 13 6 1.6826 -2.5529 2.1354 14 6 2.2687 -2.6795 3.4108 15 53 1.5545 -3.8526 4.9928 16 6 3.3760 -1.9093 3.4243 17 7 3.4894 -1.3047 2.2070 18 1 4.1943 -0.6927 1.9434 19 1 -0.3634 0.0914 1.0236 20 1 -0.3633 0.8408 -0.5910 21 1 -0.3634 -0.9321 -0.4327 22 1 -0.0518 3.0973 1.3773 23 1 3.1499 -1.1386 -0.5133 24 1 1.6084 -2.0285 -0.5129 25 1 0.7829 -3.0432 1.7939 26 1 4.0535 -1.7891 4.2567 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144401155.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:14:55 Heat of formation + Delta-G solvation = 80.216240 kcal Electronic energy + Delta-G solvation = -12056.836094 eV Core-core repulsion = 9803.384754 eV Total energy + Delta-G solvation = -2253.451340 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 305.992 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.56837 -35.52983 -31.85818 -31.40079 -29.26245 -27.48757 -25.92067 -24.97392 -21.39273 -19.67340 -19.12224 -17.05117 -16.61383 -14.88261 -14.00961 -13.60700 -13.31673 -12.95723 -12.79791 -12.01572 -11.77973 -11.58502 -10.95414 -10.88003 -10.70491 -10.41794 -10.08811 -9.99890 -9.92079 -9.43262 -8.63601 -8.18995 -7.52230 -6.88588 -5.80840 -3.26095 1.80525 2.74284 3.30156 3.34420 3.39228 3.41245 3.99398 4.43279 5.34070 5.49045 5.62794 5.83144 5.88417 6.14245 6.40281 6.57152 6.65059 6.74446 7.34132 7.36968 7.62623 7.66092 7.76493 8.10684 8.29052 9.13188 9.76675 10.25372 11.22974 Molecular weight = 305.99amu Principal moments of inertia in cm(-1) A = 0.038298 B = 0.004591 C = 0.004544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.934961 B = 6097.568181 C = 6160.203069 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.590 5.590 3 C -0.265 4.265 4 H 0.068 0.932 5 C 0.007 3.993 6 N -0.897 5.897 7 Si 0.904 3.096 8 H -0.286 1.286 9 H -0.291 1.291 10 H -0.281 1.281 11 C 0.204 3.796 12 C 0.048 3.952 13 C -0.186 4.186 14 C -0.166 4.166 15 I -0.056 7.056 16 C 0.009 3.991 17 N -0.535 5.535 18 H 0.416 0.584 19 H 0.031 0.969 20 H 0.044 0.956 21 H 0.001 0.999 22 H 0.254 0.746 23 H 0.052 0.948 24 H 0.066 0.934 25 H 0.130 0.870 26 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.044 -13.136 6.963 15.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.311 5.311 3 C -0.394 4.394 4 H 0.086 0.914 5 C -0.193 4.193 6 N -0.541 5.541 7 Si 0.734 3.266 8 H -0.213 1.213 9 H -0.217 1.217 10 H -0.207 1.207 11 C 0.075 3.925 12 C -0.071 4.071 13 C -0.213 4.213 14 C -0.314 4.314 15 I 0.092 6.908 16 C -0.127 4.127 17 N -0.129 5.129 18 H 0.253 0.747 19 H 0.049 0.951 20 H 0.063 0.937 21 H 0.019 0.981 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.084 0.916 25 H 0.148 0.852 26 H 0.175 0.825 Dipole moment (debyes) X Y Z Total from point charges 3.522 -13.662 8.021 16.229 hybrid contribution 1.012 2.081 -0.852 2.466 sum 4.534 -11.581 7.169 14.355 Atomic orbital electron populations 1.20823 0.82044 0.95625 0.99680 1.44125 1.02152 1.00147 1.84684 1.19160 0.97252 0.84903 1.38093 0.91423 1.25014 0.97787 0.98420 0.98084 1.70099 1.18528 1.26974 1.38506 0.86300 0.78528 0.84036 0.77758 1.21277 1.21719 1.20652 1.19600 0.96589 0.89030 0.87247 1.22235 0.89387 0.97472 0.98012 1.20326 1.02279 1.05731 0.92931 1.23333 1.01840 1.08987 0.97264 1.96327 1.88109 1.66492 1.39900 1.21454 1.00725 1.00572 0.89932 1.42030 1.23023 1.36735 1.11143 0.74749 0.95057 0.93732 0.98085 0.93580 0.92965 0.91606 0.85244 0.82479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 49. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.97 9.02 59.84 0.54 4.51 15 2 N -0.59 -14.28 2.91 -182.50 -0.53 -14.82 15 3 C -0.26 -6.94 9.68 -15.06 -0.15 -7.08 15 4 H 0.07 1.71 7.86 -52.49 -0.41 1.29 15 5 C 0.01 0.18 5.06 -17.43 -0.09 0.09 15 6 N -0.90 -25.86 10.67 55.49 0.59 -25.26 15 7 Si 0.90 21.30 29.58 -169.99 -5.03 16.27 15 8 H -0.29 -6.74 7.11 56.52 0.40 -6.33 15 9 H -0.29 -6.99 7.11 56.52 0.40 -6.59 15 10 H -0.28 -6.42 7.11 56.52 0.40 -6.02 15 11 C 0.20 4.00 6.24 -5.19 -0.03 3.97 15 12 C 0.05 0.91 6.75 -81.79 -0.55 0.36 15 13 C -0.19 -3.49 10.75 -39.77 -0.43 -3.92 15 14 C -0.17 -2.86 6.54 -39.75 -0.26 -3.12 15 15 I -0.06 -0.80 40.68 -73.02 -2.97 -3.77 15 16 C 0.01 0.15 11.90 -16.71 -0.20 -0.05 15 17 N -0.54 -9.24 6.08 -9.10 -0.06 -9.30 15 18 H 0.42 6.43 8.96 -40.82 -0.37 6.06 15 19 H 0.03 0.84 7.40 -51.93 -0.38 0.46 15 20 H 0.04 1.16 7.21 -51.93 -0.37 0.79 15 21 H 0.00 0.01 7.84 -51.93 -0.41 -0.39 15 22 H 0.25 7.14 8.31 -40.82 -0.34 6.80 15 23 H 0.05 0.96 8.03 -51.93 -0.42 0.54 15 24 H 0.07 1.17 7.86 -51.93 -0.41 0.76 15 25 H 0.13 2.36 8.06 -52.49 -0.42 1.93 15 26 H 0.16 2.12 8.06 -52.49 -0.42 1.70 15 LS Contribution 256.76 15.07 3.87 3.87 Total: -1.00 -29.21 256.76 -8.04 -37.25 By element: Atomic # 1 Polarization: 3.75 SS G_CDS: -2.75 Total: 1.00 kcal Atomic # 6 Polarization: -4.07 SS G_CDS: -1.16 Total: -5.24 kcal Atomic # 7 Polarization: -49.38 SS G_CDS: 0.01 Total: -49.37 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Atomic # 53 Polarization: -0.80 SS G_CDS: -2.97 Total: -3.77 kcal Total LS contribution 3.87 Total: 3.87 kcal Total: -29.21 -8.04 -37.25 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144401155.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.464 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.038 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds