Wall clock time and date at job start Tue Mar 31 2020 09:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47443 * 2 1 4 4 C 1.52998 * 109.47582 * 239.99582 * 2 1 3 5 5 C 1.53001 * 109.47323 * 174.99850 * 4 2 1 6 6 C 1.50701 * 109.47082 * 179.97438 * 5 4 2 7 7 H 1.08006 * 119.99977 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00035 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00129 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99952 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47046 * 180.02562 * 10 8 6 12 12 H 1.48499 * 109.47117 * 299.99832 * 10 8 6 13 13 H 1.48496 * 109.47393 * 59.99989 * 10 8 6 14 14 N 1.46907 * 109.47047 * 119.99844 * 2 1 3 15 15 C 1.46905 * 110.99850 * 252.27261 * 14 2 1 16 16 C 1.52998 * 109.47393 * 55.09135 * 15 14 2 17 17 C 1.52993 * 109.47108 * 180.02562 * 16 15 14 18 18 H 1.08996 * 109.47344 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.47282 * 300.00215 * 17 16 15 20 20 C 1.53007 * 109.47040 * 59.99983 * 19 17 16 21 21 C 1.53003 * 109.47040 * 179.97438 * 20 19 17 22 22 C 1.52998 * 109.46719 * 175.09728 * 15 14 2 23 23 C 1.53001 * 109.46919 * 59.99907 * 20 19 17 24 24 C 1.52998 * 109.47316 * 300.00443 * 23 20 19 25 25 C 1.52997 * 109.46983 * 180.02562 * 24 23 20 26 26 C 1.52991 * 109.47489 * 59.99592 * 24 23 20 27 27 C 1.53001 * 109.46908 * 295.09588 * 15 14 2 28 28 H 1.09000 * 109.47502 * 174.69137 * 1 2 3 29 29 H 1.08997 * 109.47383 * 294.69648 * 1 2 3 30 30 H 1.09009 * 109.47070 * 54.69505 * 1 2 3 31 31 H 1.09009 * 109.46960 * 55.00319 * 4 2 1 32 32 H 1.09002 * 109.47063 * 295.00524 * 4 2 1 33 33 H 1.09005 * 109.46451 * 60.00757 * 5 4 2 34 34 H 1.08994 * 109.47408 * 300.00046 * 5 4 2 35 35 H 0.96996 * 120.00190 * 179.97438 * 9 8 6 36 36 H 1.00904 * 110.99410 * 16.21924 * 14 2 1 37 37 H 1.08997 * 109.47423 * 300.00306 * 16 15 14 38 38 H 1.09010 * 109.46773 * 60.00090 * 16 15 14 39 39 H 1.09001 * 109.47308 * 180.02562 * 19 17 16 40 40 H 1.08996 * 109.47385 * 300.00198 * 19 17 16 41 41 H 1.09001 * 109.47308 * 300.00133 * 21 20 19 42 42 H 1.08993 * 109.46918 * 60.00041 * 21 20 19 43 43 H 1.08996 * 109.46588 * 179.97438 * 21 20 19 44 44 H 1.09001 * 109.46860 * 299.99127 * 22 15 14 45 45 H 1.09000 * 109.47631 * 60.00101 * 22 15 14 46 46 H 1.09002 * 109.46832 * 180.02562 * 23 20 19 47 47 H 1.09001 * 109.46946 * 60.00163 * 23 20 19 48 48 H 1.08999 * 109.47481 * 299.99767 * 25 24 23 49 49 H 1.09002 * 109.47099 * 59.99683 * 25 24 23 50 50 H 1.08998 * 109.47254 * 179.97438 * 25 24 23 51 51 H 1.08994 * 109.47381 * 179.97438 * 26 24 23 52 52 H 1.09001 * 109.46922 * 60.00188 * 26 24 23 53 53 H 1.09002 * 109.46832 * 300.00148 * 27 15 14 54 54 H 1.08998 * 109.47587 * 59.99769 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 6 4.0673 -1.3243 -2.5436 7 1 3.3689 -1.8048 -3.2128 8 6 5.4186 -1.3614 -2.8148 9 7 6.2692 -0.7768 -1.9997 10 14 6.0413 -2.2422 -4.3399 11 1 7.5214 -2.1385 -4.4017 12 1 5.6479 -3.6729 -4.2805 13 1 5.4498 -1.6159 -5.5494 14 7 2.0196 -0.6925 1.1995 15 6 2.5888 0.2603 2.1619 16 6 1.5522 1.3376 2.4871 17 6 2.1453 2.3302 3.4889 18 1 1.4066 3.0974 3.7209 19 6 2.5319 1.5909 4.7714 20 6 3.5687 0.5136 4.4462 21 6 3.9558 -0.2253 5.7289 22 6 2.9751 -0.4795 3.4443 23 6 4.8117 1.1684 3.8404 24 6 4.4250 1.9078 2.5580 25 6 5.6682 2.5620 1.9519 26 6 3.3883 2.9849 2.8832 27 6 3.8321 0.9152 1.5567 28 1 -0.3634 -1.0232 -0.0951 29 1 -0.3634 0.4294 0.9336 30 1 -0.3634 0.5940 -0.8387 31 1 1.6055 -0.2618 -2.1370 32 1 1.7517 -1.7716 -1.2055 33 1 3.9994 -1.0729 -0.4258 34 1 3.8533 0.4369 -1.3573 35 1 7.2199 -0.8032 -2.1903 36 1 1.2873 -1.2415 1.6243 37 1 1.2770 1.8646 1.5735 38 1 0.6663 0.8710 2.9182 39 1 2.9541 2.2982 5.4854 40 1 1.6464 1.1244 5.2030 41 1 4.3785 0.4821 6.4423 42 1 3.0705 -0.6917 6.1608 43 1 4.6940 -0.9930 5.4971 44 1 2.0893 -0.9460 3.8754 45 1 3.7137 -1.2469 3.2126 46 1 5.5501 0.4009 3.6084 47 1 5.2342 1.8756 4.5542 48 1 6.0912 3.2691 2.6655 49 1 6.4064 1.7942 1.7202 50 1 5.3928 3.0884 1.0381 51 1 3.1132 3.5120 1.9696 52 1 3.8108 3.6921 3.5969 53 1 4.5707 0.1477 1.3251 54 1 3.5570 1.4422 0.6431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001172489430.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:04 Heat of formation + Delta-G solvation = -47.520881 kcal Electronic energy + Delta-G solvation = -28304.573608 eV Core-core repulsion = 25045.485557 eV Total energy + Delta-G solvation = -3259.088051 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 305.241 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.68003 -37.13708 -34.52612 -33.63626 -32.98958 -32.15373 -29.56374 -27.67916 -26.73452 -26.40331 -25.86557 -25.79480 -24.86793 -21.45157 -21.05636 -20.20820 -19.88567 -18.90018 -17.13523 -16.04589 -15.29547 -14.82115 -14.38811 -14.33624 -14.26663 -14.20313 -14.02626 -13.89863 -13.55535 -13.17709 -12.94521 -12.44472 -12.31935 -12.23626 -12.03792 -11.92101 -11.83670 -11.72393 -11.59595 -11.41819 -11.37810 -11.09543 -10.81688 -10.71676 -10.66465 -10.57153 -10.41372 -10.35432 -10.26791 -10.09546 -9.73962 -9.60332 -9.51596 -9.30725 -9.05844 -8.81239 -8.16469 -7.70195 -5.83727 -3.83699 3.41208 3.45205 3.48140 4.38343 4.58237 4.61651 4.63711 4.91981 5.07985 5.11598 5.30725 5.33201 5.37756 5.41768 5.47217 5.51468 5.52070 5.54061 5.62164 5.66500 5.69843 5.75225 5.78099 5.81692 5.85142 5.89493 5.95733 6.06402 6.08691 6.14716 6.15447 6.17864 6.20069 6.20478 6.30323 6.35872 6.41068 6.47360 6.48050 6.55703 6.56955 6.60302 6.72605 6.83390 6.89217 6.99956 7.07231 7.42732 7.70375 7.90239 7.99704 8.15668 8.30194 8.64722 9.24682 9.78259 11.26988 Molecular weight = 305.24amu Principal moments of inertia in cm(-1) A = 0.015913 B = 0.004775 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.145295 B = 5862.147660 C = 6627.082722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.082 3.918 3 H 0.068 0.932 4 C -0.098 4.098 5 C 0.033 3.967 6 C -0.517 4.517 7 H 0.048 0.952 8 C 0.058 3.942 9 N -0.893 5.893 10 Si 0.884 3.116 11 H -0.289 1.289 12 H -0.279 1.279 13 H -0.279 1.279 14 N -0.664 5.664 15 C 0.125 3.875 16 C -0.138 4.138 17 C -0.082 4.082 18 H 0.061 0.939 19 C -0.099 4.099 20 C -0.056 4.056 21 C -0.140 4.140 22 C -0.092 4.092 23 C -0.094 4.094 24 C -0.057 4.057 25 C -0.139 4.139 26 C -0.101 4.101 27 C -0.088 4.088 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.055 0.945 31 H 0.040 0.960 32 H 0.046 0.954 33 H 0.033 0.967 34 H 0.005 0.995 35 H 0.257 0.743 36 H 0.330 0.670 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.055 0.945 48 H 0.046 0.954 49 H 0.061 0.939 50 H 0.055 0.945 51 H 0.059 0.941 52 H 0.056 0.944 53 H 0.081 0.919 54 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.885 6.539 15.798 18.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.028 4.028 3 H 0.086 0.914 4 C -0.136 4.136 5 C -0.004 4.004 6 C -0.556 4.556 7 H 0.066 0.934 8 C -0.142 4.142 9 N -0.533 5.533 10 Si 0.712 3.288 11 H -0.215 1.215 12 H -0.204 1.204 13 H -0.205 1.205 14 N -0.292 5.292 15 C 0.034 3.966 16 C -0.177 4.177 17 C -0.101 4.101 18 H 0.080 0.920 19 C -0.137 4.137 20 C -0.057 4.057 21 C -0.197 4.197 22 C -0.130 4.130 23 C -0.131 4.131 24 C -0.058 4.058 25 C -0.196 4.196 26 C -0.138 4.138 27 C -0.126 4.126 28 H 0.074 0.926 29 H 0.064 0.936 30 H 0.074 0.926 31 H 0.059 0.941 32 H 0.065 0.935 33 H 0.052 0.948 34 H 0.023 0.977 35 H 0.067 0.933 36 H 0.148 0.852 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.072 0.928 45 H 0.090 0.910 46 H 0.083 0.917 47 H 0.074 0.926 48 H 0.065 0.935 49 H 0.080 0.920 50 H 0.074 0.926 51 H 0.078 0.922 52 H 0.075 0.925 53 H 0.100 0.900 54 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.082 6.389 15.520 18.217 hybrid contribution -0.491 -0.050 -0.613 0.787 sum -7.573 6.339 14.906 17.881 Atomic orbital electron populations 1.22499 0.98077 1.01712 1.00993 1.21755 0.91194 0.97917 0.91900 0.91426 1.21650 1.00528 0.98479 0.92970 1.19013 0.88401 0.96106 0.96870 1.21336 0.91772 1.33909 1.08538 0.93359 1.24955 0.97128 0.95798 0.96361 1.69954 1.02058 1.44451 1.36870 0.86796 0.77537 0.80359 0.84066 1.21464 1.20449 1.20520 1.60643 1.37815 1.24391 1.06374 1.20820 0.94137 0.90366 0.91314 1.22373 0.98439 0.97982 0.98952 1.21011 0.96972 0.96953 0.95175 0.92016 1.21562 0.98195 0.97227 0.96688 1.20466 0.95414 0.95027 0.94778 1.21839 1.01110 1.00031 0.96714 1.21546 1.00427 0.97326 0.93693 1.21597 0.96484 0.99020 0.96020 1.20479 0.94933 0.95149 0.95235 1.21809 0.97275 1.00433 1.00113 1.21573 0.95043 0.97093 1.00113 1.21613 0.96411 0.97898 0.96643 0.92641 0.93558 0.92593 0.94140 0.93487 0.94828 0.97681 0.93338 0.85250 0.91771 0.92842 0.92390 0.92517 0.92980 0.92998 0.92518 0.92818 0.90952 0.91704 0.92592 0.93508 0.92020 0.92617 0.92237 0.92534 0.89997 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.40 8.80 37.16 0.33 -2.08 16 2 C 0.08 1.38 1.62 -67.71 -0.11 1.27 16 3 H 0.07 1.21 4.82 -51.93 -0.25 0.96 16 4 C -0.10 -2.07 4.83 -26.73 -0.13 -2.20 16 5 C 0.03 0.86 4.06 -27.88 -0.11 0.75 16 6 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 7 H 0.05 1.38 7.74 -52.48 -0.41 0.97 16 8 C 0.06 1.69 5.46 -17.82 -0.10 1.60 16 9 N -0.89 -27.00 13.29 55.43 0.74 -26.26 16 10 Si 0.88 22.20 29.54 -169.99 -5.02 17.18 16 11 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.50 16 14 N -0.66 -10.68 5.45 -93.04 -0.51 -11.19 16 15 C 0.12 1.81 0.70 -131.60 -0.09 1.71 16 16 C -0.14 -1.76 3.39 -26.74 -0.09 -1.85 16 17 C -0.08 -0.94 3.19 -90.62 -0.29 -1.23 16 18 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 19 C -0.10 -1.06 4.47 -26.73 -0.12 -1.18 16 20 C -0.06 -0.65 0.77 -154.47 -0.12 -0.77 16 21 C -0.14 -1.41 8.47 37.16 0.31 -1.10 16 22 C -0.09 -1.22 3.97 -26.70 -0.11 -1.32 16 23 C -0.09 -1.19 3.75 -26.73 -0.10 -1.29 16 24 C -0.06 -0.80 0.77 -154.54 -0.12 -0.91 16 25 C -0.14 -2.00 8.47 37.16 0.31 -1.68 16 26 C -0.10 -1.24 4.47 -26.74 -0.12 -1.36 16 27 C -0.09 -1.48 2.87 -26.76 -0.08 -1.55 16 28 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.05 0.57 6.83 -51.93 -0.35 0.21 16 30 H 0.05 0.75 8.14 -51.92 -0.42 0.33 16 31 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 32 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 33 H 0.03 0.93 6.91 -51.93 -0.36 0.57 16 34 H 0.00 0.14 7.64 -51.93 -0.40 -0.26 16 35 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 36 H 0.33 4.77 8.11 -39.29 -0.32 4.45 16 37 H 0.06 0.88 6.09 -51.93 -0.32 0.56 16 38 H 0.05 0.64 7.91 -51.92 -0.41 0.23 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 46 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 47 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 48 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 50 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 51 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 52 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 53 H 0.08 1.69 7.48 -51.93 -0.39 1.30 16 54 H 0.07 1.24 5.79 -51.93 -0.30 0.94 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -29.29 381.13 -10.76 -40.05 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -10.67 Total: 3.00 kcal Atomic # 6 Polarization: -27.48 SS G_CDS: -1.04 Total: -28.51 kcal Atomic # 7 Polarization: -37.68 SS G_CDS: 0.23 Total: -37.46 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.29 -10.76 -40.05 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489430.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.470 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.521 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds