Wall clock time and date at job start Tue Mar 31 2020 09:08:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.47443 * 2 1 4 4 C 1.52998 * 109.47582 * 239.99582 * 2 1 3 5 5 C 1.53001 * 109.47323 * 174.99850 * 4 2 1 6 6 C 1.50701 * 109.47082 * 179.97438 * 5 4 2 7 7 H 1.08006 * 119.99977 * 0.02562 * 6 5 4 8 8 C 1.37872 * 120.00035 * 180.02562 * 6 5 4 9 9 N 1.31513 * 120.00129 * 0.02562 * 8 6 5 10 10 Si 1.86798 * 119.99952 * 180.02562 * 8 6 5 11 11 H 1.48500 * 109.47046 * 180.02562 * 10 8 6 12 12 H 1.48499 * 109.47117 * 299.99832 * 10 8 6 13 13 H 1.48496 * 109.47393 * 59.99989 * 10 8 6 14 14 N 1.46907 * 109.47047 * 119.99844 * 2 1 3 15 15 C 1.46905 * 110.99850 * 252.27261 * 14 2 1 16 16 C 1.52998 * 109.47393 * 55.09135 * 15 14 2 17 17 C 1.52993 * 109.47108 * 180.02562 * 16 15 14 18 18 H 1.08996 * 109.47344 * 180.02562 * 17 16 15 19 19 C 1.53003 * 109.47282 * 300.00215 * 17 16 15 20 20 C 1.53007 * 109.47040 * 59.99983 * 19 17 16 21 21 C 1.53003 * 109.47040 * 179.97438 * 20 19 17 22 22 C 1.52998 * 109.46719 * 175.09728 * 15 14 2 23 23 C 1.53001 * 109.46919 * 59.99907 * 20 19 17 24 24 C 1.52998 * 109.47316 * 300.00443 * 23 20 19 25 25 C 1.52997 * 109.46983 * 180.02562 * 24 23 20 26 26 C 1.52991 * 109.47489 * 59.99592 * 24 23 20 27 27 C 1.53001 * 109.46908 * 295.09588 * 15 14 2 28 28 H 1.09000 * 109.47502 * 174.69137 * 1 2 3 29 29 H 1.08997 * 109.47383 * 294.69648 * 1 2 3 30 30 H 1.09009 * 109.47070 * 54.69505 * 1 2 3 31 31 H 1.09009 * 109.46960 * 55.00319 * 4 2 1 32 32 H 1.09002 * 109.47063 * 295.00524 * 4 2 1 33 33 H 1.09005 * 109.46451 * 60.00757 * 5 4 2 34 34 H 1.08994 * 109.47408 * 300.00046 * 5 4 2 35 35 H 0.96996 * 120.00190 * 179.97438 * 9 8 6 36 36 H 1.00904 * 110.99410 * 16.21924 * 14 2 1 37 37 H 1.08997 * 109.47423 * 300.00306 * 16 15 14 38 38 H 1.09010 * 109.46773 * 60.00090 * 16 15 14 39 39 H 1.09001 * 109.47308 * 180.02562 * 19 17 16 40 40 H 1.08996 * 109.47385 * 300.00198 * 19 17 16 41 41 H 1.09001 * 109.47308 * 300.00133 * 21 20 19 42 42 H 1.08993 * 109.46918 * 60.00041 * 21 20 19 43 43 H 1.08996 * 109.46588 * 179.97438 * 21 20 19 44 44 H 1.09001 * 109.46860 * 299.99127 * 22 15 14 45 45 H 1.09000 * 109.47631 * 60.00101 * 22 15 14 46 46 H 1.09002 * 109.46832 * 180.02562 * 23 20 19 47 47 H 1.09001 * 109.46946 * 60.00163 * 23 20 19 48 48 H 1.08999 * 109.47481 * 299.99767 * 25 24 23 49 49 H 1.09002 * 109.47099 * 59.99683 * 25 24 23 50 50 H 1.08998 * 109.47254 * 179.97438 * 25 24 23 51 51 H 1.08994 * 109.47381 * 179.97438 * 26 24 23 52 52 H 1.09001 * 109.46922 * 60.00188 * 26 24 23 53 53 H 1.09002 * 109.46832 * 300.00148 * 27 15 14 54 54 H 1.08998 * 109.47587 * 59.99769 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 3.5649 -0.6133 -1.3135 6 6 4.0673 -1.3243 -2.5436 7 1 3.3689 -1.8048 -3.2128 8 6 5.4186 -1.3614 -2.8148 9 7 6.2692 -0.7768 -1.9997 10 14 6.0413 -2.2422 -4.3399 11 1 7.5214 -2.1385 -4.4017 12 1 5.6479 -3.6729 -4.2805 13 1 5.4498 -1.6159 -5.5494 14 7 2.0196 -0.6925 1.1995 15 6 2.5888 0.2603 2.1619 16 6 1.5522 1.3376 2.4871 17 6 2.1453 2.3302 3.4889 18 1 1.4066 3.0974 3.7209 19 6 2.5319 1.5909 4.7714 20 6 3.5687 0.5136 4.4462 21 6 3.9558 -0.2253 5.7289 22 6 2.9751 -0.4795 3.4443 23 6 4.8117 1.1684 3.8404 24 6 4.4250 1.9078 2.5580 25 6 5.6682 2.5620 1.9519 26 6 3.3883 2.9849 2.8832 27 6 3.8321 0.9152 1.5567 28 1 -0.3634 -1.0232 -0.0951 29 1 -0.3634 0.4294 0.9336 30 1 -0.3634 0.5940 -0.8387 31 1 1.6055 -0.2618 -2.1370 32 1 1.7517 -1.7716 -1.2055 33 1 3.9994 -1.0729 -0.4258 34 1 3.8533 0.4369 -1.3573 35 1 7.2199 -0.8032 -2.1903 36 1 1.2873 -1.2415 1.6243 37 1 1.2770 1.8646 1.5735 38 1 0.6663 0.8710 2.9182 39 1 2.9541 2.2982 5.4854 40 1 1.6464 1.1244 5.2030 41 1 4.3785 0.4821 6.4423 42 1 3.0705 -0.6917 6.1608 43 1 4.6940 -0.9930 5.4971 44 1 2.0893 -0.9460 3.8754 45 1 3.7137 -1.2469 3.2126 46 1 5.5501 0.4009 3.6084 47 1 5.2342 1.8756 4.5542 48 1 6.0912 3.2691 2.6655 49 1 6.4064 1.7942 1.7202 50 1 5.3928 3.0884 1.0381 51 1 3.1132 3.5120 1.9696 52 1 3.8108 3.6921 3.5969 53 1 4.5707 0.1477 1.3251 54 1 3.5570 1.4422 0.6431 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001172489430.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:08:03 Heat of formation + Delta-G solvation = -62.617335 kcal Electronic energy + Delta-G solvation = -28305.228239 eV Core-core repulsion = 25045.485557 eV Total energy + Delta-G solvation = -3259.742682 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 305.241 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.77195 -38.49057 -35.63582 -35.40523 -34.24637 -33.68172 -31.40783 -28.92836 -27.74372 -27.52136 -27.12438 -26.91174 -26.61742 -23.27071 -22.07288 -21.68195 -21.07516 -20.12755 -18.37520 -18.18789 -16.63634 -16.44111 -16.11208 -15.39244 -15.36820 -15.32304 -15.15667 -14.97496 -14.74055 -14.53754 -14.20798 -14.10918 -13.95465 -13.35900 -13.31322 -13.13218 -12.96280 -12.92197 -12.85127 -12.78201 -12.73381 -12.65390 -12.51984 -12.36502 -11.91256 -11.78020 -11.68594 -11.62969 -11.54834 -11.44364 -11.27228 -11.07787 -10.95683 -10.79836 -10.54013 -10.51310 -10.42112 -8.99836 -8.12344 -6.22670 1.37031 1.40483 1.47967 2.42825 3.18852 3.21014 3.58117 3.60678 3.86002 4.03588 4.07546 4.13949 4.25325 4.28280 4.34831 4.37342 4.40383 4.44980 4.47471 4.54536 4.57972 4.72808 4.75637 4.80006 4.82013 4.83396 4.87839 4.95363 5.00754 5.03930 5.05906 5.08998 5.09722 5.11066 5.20678 5.22235 5.24538 5.26767 5.29240 5.31260 5.35198 5.39204 5.47286 5.49693 5.55984 5.60781 5.61894 5.68838 5.77677 5.94133 6.06518 6.37078 6.42655 6.80519 6.96839 7.44669 8.97740 Molecular weight = 305.24amu Principal moments of inertia in cm(-1) A = 0.015913 B = 0.004775 C = 0.004224 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1759.145295 B = 5862.147660 C = 6627.082722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.093 3.907 3 H 0.053 0.947 4 C -0.091 4.091 5 C 0.051 3.949 6 C -0.546 4.546 7 H 0.051 0.949 8 C 0.003 3.997 9 N -0.927 5.927 10 Si 0.957 3.043 11 H -0.283 1.283 12 H -0.269 1.269 13 H -0.268 1.268 14 N -0.685 5.685 15 C 0.127 3.873 16 C -0.131 4.131 17 C -0.080 4.080 18 H 0.085 0.915 19 C -0.094 4.094 20 C -0.053 4.053 21 C -0.136 4.136 22 C -0.089 4.089 23 C -0.092 4.092 24 C -0.057 4.057 25 C -0.138 4.138 26 C -0.097 4.097 27 C -0.076 4.076 28 H 0.061 0.939 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.040 0.960 32 H 0.043 0.957 33 H 0.004 0.996 34 H -0.028 1.028 35 H 0.259 0.741 36 H 0.342 0.658 37 H 0.052 0.948 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.065 0.935 43 H 0.044 0.956 44 H 0.072 0.928 45 H 0.041 0.959 46 H 0.039 0.961 47 H 0.077 0.923 48 H 0.075 0.925 49 H 0.032 0.968 50 H 0.039 0.961 51 H 0.048 0.952 52 H 0.078 0.922 53 H 0.024 0.976 54 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.977 7.148 17.803 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.017 4.017 3 H 0.071 0.929 4 C -0.129 4.129 5 C 0.014 3.986 6 C -0.584 4.584 7 H 0.069 0.931 8 C -0.195 4.195 9 N -0.567 5.567 10 Si 0.781 3.219 11 H -0.208 1.208 12 H -0.194 1.194 13 H -0.193 1.193 14 N -0.315 5.315 15 C 0.036 3.964 16 C -0.170 4.170 17 C -0.099 4.099 18 H 0.103 0.897 19 C -0.131 4.131 20 C -0.054 4.054 21 C -0.193 4.193 22 C -0.126 4.126 23 C -0.129 4.129 24 C -0.058 4.058 25 C -0.195 4.195 26 C -0.135 4.135 27 C -0.114 4.114 28 H 0.080 0.920 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.022 0.978 34 H -0.009 1.009 35 H 0.068 0.932 36 H 0.161 0.839 37 H 0.071 0.929 38 H 0.091 0.909 39 H 0.095 0.905 40 H 0.092 0.908 41 H 0.086 0.914 42 H 0.084 0.916 43 H 0.063 0.937 44 H 0.091 0.909 45 H 0.060 0.940 46 H 0.058 0.942 47 H 0.096 0.904 48 H 0.094 0.906 49 H 0.051 0.949 50 H 0.058 0.942 51 H 0.066 0.934 52 H 0.097 0.903 53 H 0.043 0.957 54 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -9.192 6.994 17.530 20.993 hybrid contribution 0.267 -0.266 -1.306 1.359 sum -8.925 6.728 16.224 19.701 Atomic orbital electron populations 1.22353 0.94702 1.02509 1.02487 1.21464 0.93649 0.96239 0.90342 0.92879 1.21525 0.96867 0.98892 0.95644 1.18743 0.91875 0.93279 0.94745 1.21803 0.92487 1.34518 1.09603 0.93114 1.25890 0.97335 0.96468 0.99814 1.70119 1.02365 1.45460 1.38793 0.85639 0.77050 0.79296 0.79870 1.20801 1.19428 1.19330 1.60463 1.38573 1.25577 1.06903 1.20797 0.93459 0.90914 0.91193 1.22279 0.98183 0.97404 0.99167 1.21049 0.96682 0.97112 0.95052 0.89654 1.21552 0.98285 0.96873 0.96385 1.20468 0.95025 0.95140 0.94768 1.21802 1.01505 0.99993 0.96005 1.21522 1.00419 0.97125 0.93582 1.21577 0.96941 0.98742 0.95635 1.20483 0.95085 0.95228 0.94996 1.21805 0.97289 1.00064 1.00336 1.21547 0.95016 0.96529 1.00367 1.21426 0.96518 0.96867 0.96617 0.91966 0.91220 0.92105 0.94131 0.93867 0.97778 1.00920 0.93212 0.83864 0.92939 0.90909 0.90491 0.90847 0.91390 0.91646 0.93711 0.90920 0.94038 0.94214 0.90419 0.90620 0.94866 0.94207 0.93355 0.90304 0.95698 0.95008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.21 8.80 71.98 0.63 -3.57 16 2 C 0.09 3.22 1.62 44.91 0.07 3.29 16 3 H 0.05 2.00 4.82 -2.38 -0.01 1.99 16 4 C -0.09 -4.03 4.83 30.59 0.15 -3.88 16 5 C 0.05 2.84 4.06 29.85 0.12 2.96 16 6 C -0.55 -33.12 9.11 25.60 0.23 -32.89 16 7 H 0.05 2.98 7.74 -2.91 -0.02 2.95 16 8 C 0.00 0.15 5.46 84.65 0.46 0.62 16 9 N -0.93 -59.02 13.29 21.45 0.28 -58.73 16 10 Si 0.96 46.60 29.54 68.60 2.03 48.63 16 11 H -0.28 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.27 -12.65 7.11 99.48 0.71 -11.94 16 13 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 14 N -0.68 -22.79 5.45 -448.27 -2.44 -25.23 16 15 C 0.13 3.77 0.70 3.53 0.00 3.77 16 16 C -0.13 -3.08 3.39 30.59 0.10 -2.98 16 17 C -0.08 -1.58 3.19 -10.80 -0.03 -1.61 16 18 H 0.09 1.39 8.14 -2.39 -0.02 1.38 16 19 C -0.09 -1.60 4.47 30.60 0.14 -1.46 16 20 C -0.05 -1.14 0.77 -52.16 -0.04 -1.18 16 21 C -0.14 -2.41 8.47 71.98 0.61 -1.80 16 22 C -0.09 -2.32 3.97 30.61 0.12 -2.20 16 23 C -0.09 -2.30 3.75 30.59 0.11 -2.19 16 24 C -0.06 -1.66 0.77 -52.20 -0.04 -1.70 16 25 C -0.14 -4.26 8.47 71.98 0.61 -3.65 16 26 C -0.10 -2.24 4.47 30.59 0.14 -2.11 16 27 C -0.08 -2.82 2.87 30.58 0.09 -2.73 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.07 1.50 6.83 -2.39 -0.02 1.49 16 30 H 0.06 1.53 8.14 -2.38 -0.02 1.51 16 31 H 0.04 1.76 8.14 -2.38 -0.02 1.74 16 32 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.00 0.24 6.91 -2.38 -0.02 0.22 16 34 H -0.03 -1.70 7.64 -2.39 -0.02 -1.71 16 35 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 36 H 0.34 9.69 8.11 -89.69 -0.73 8.96 16 37 H 0.05 1.37 6.09 -2.39 -0.01 1.36 16 38 H 0.07 1.47 7.91 -2.38 -0.02 1.45 16 39 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 41 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 42 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.04 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 46 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.03 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 51 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 52 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 53 H 0.02 1.16 7.48 -2.39 -0.02 1.14 16 54 H 0.03 1.34 5.79 -2.39 -0.01 1.33 16 Total: -1.00 -68.85 381.13 3.45 -65.40 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.10 Total: 23.26 kcal Atomic # 6 Polarization: -56.80 SS G_CDS: 3.48 Total: -53.32 kcal Atomic # 7 Polarization: -81.81 SS G_CDS: -2.16 Total: -83.97 kcal Atomic # 14 Polarization: 46.60 SS G_CDS: 2.03 Total: 48.63 kcal Total: -68.85 3.45 -65.40 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001172489430.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.785 kcal (2) G-P(sol) polarization free energy of solvation -68.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds