Wall clock time and date at job start Tue Mar 31 2020 09:04:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86801 * 119.99978 * 2 1 4 4 H 1.48494 * 109.47594 * 270.00279 * 3 2 1 5 5 H 1.48501 * 109.47133 * 30.00685 * 3 2 1 6 6 H 1.48502 * 109.46633 * 150.00184 * 3 2 1 7 7 C 1.37875 * 119.99756 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00394 * 359.97438 * 7 2 1 9 9 C 1.50704 * 119.99980 * 179.97438 * 7 2 1 10 10 C 1.52995 * 109.47015 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47106 * 180.02562 * 10 9 7 12 12 C 1.53005 * 109.46804 * 299.99984 * 11 10 9 13 13 N 1.46900 * 109.47036 * 180.02562 * 12 11 10 14 14 C 1.47446 * 111.00255 * 59.87058 * 13 12 11 15 15 C 1.54316 * 107.23320 * 123.25926 * 14 13 12 16 16 C 1.55139 * 103.01810 * 22.28197 * 15 14 13 17 17 H 1.09005 * 110.98834 * 82.44234 * 16 15 14 18 18 C 1.52999 * 110.99115 * 206.25441 * 16 15 14 19 19 C 1.53002 * 109.47189 * 298.54674 * 18 16 15 20 20 C 1.53002 * 109.47351 * 179.97438 * 19 18 16 21 21 C 1.53008 * 109.46800 * 60.00435 * 20 19 18 22 22 C 1.52998 * 109.47002 * 300.00214 * 21 20 19 23 23 C 1.52999 * 109.47356 * 59.99702 * 22 21 20 24 24 C 1.47843 * 110.99888 * 180.71508 * 13 12 11 25 25 C 1.52995 * 109.47294 * 59.99723 * 12 11 10 26 26 C 1.52994 * 109.47536 * 300.00114 * 25 12 11 27 27 H 0.96997 * 119.99339 * 359.97438 * 1 2 3 28 28 H 1.09002 * 109.46744 * 59.99473 * 9 7 2 29 29 H 1.08998 * 109.47713 * 59.99719 * 10 9 7 30 30 H 1.09006 * 109.47001 * 299.99611 * 10 9 7 31 31 H 1.08996 * 109.47485 * 179.97438 * 11 10 9 32 32 H 1.08998 * 109.47190 * 59.99244 * 11 10 9 33 33 H 1.08998 * 109.46642 * 299.99595 * 12 11 10 34 34 H 1.08997 * 109.88511 * 242.66682 * 14 13 12 35 35 H 1.08994 * 109.88544 * 3.85008 * 14 13 12 36 36 H 1.08999 * 110.70589 * 140.66668 * 15 14 13 37 37 H 1.08996 * 110.70709 * 263.73004 * 15 14 13 38 38 H 1.08999 * 109.47098 * 58.54942 * 18 16 15 39 39 H 1.08999 * 109.47319 * 300.00132 * 19 18 16 40 40 H 1.09000 * 109.46947 * 60.00073 * 19 18 16 41 41 H 1.08999 * 109.47444 * 300.00579 * 20 19 18 42 42 H 1.08998 * 109.47264 * 179.97438 * 20 19 18 43 43 H 1.08998 * 109.47138 * 179.97438 * 21 20 19 44 44 H 1.08999 * 109.47005 * 59.99875 * 21 20 19 45 45 H 1.09009 * 109.46953 * 299.99705 * 22 21 20 46 46 H 1.08996 * 109.47380 * 180.02562 * 22 21 20 47 47 H 1.09006 * 109.46928 * 180.02562 * 23 22 21 48 48 H 1.08999 * 109.47098 * 60.00066 * 23 22 21 49 49 H 1.08998 * 110.37465 * 332.46027 * 24 13 12 50 50 H 1.09003 * 110.37404 * 94.80784 * 24 13 12 51 51 H 1.09003 * 109.46739 * 60.00586 * 25 12 11 52 52 H 1.09005 * 109.47042 * 179.97438 * 25 12 11 53 53 H 1.09006 * 109.47236 * 300.00467 * 26 25 12 54 54 H 1.08996 * 109.47885 * 179.97438 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5116 -1.1941 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5515 -2.6367 -0.0009 12 6 6.0615 -1.9155 -1.2503 13 7 7.5305 -1.9161 -1.2506 14 6 8.0584 -3.2928 -1.2477 15 6 8.9766 -3.4330 -2.4800 16 6 9.3659 -1.9645 -2.7946 17 1 10.1916 -1.6358 -2.1636 18 6 9.7092 -1.7938 -4.2758 19 6 10.9107 -2.6742 -4.6255 20 6 11.2537 -2.5040 -6.1069 21 6 11.5964 -1.0391 -6.3859 22 6 10.3950 -0.1587 -6.0361 23 6 10.0520 -0.3291 -4.5548 24 6 8.0603 -1.2112 -2.4373 25 6 5.5515 -0.4731 -1.2505 26 6 4.0216 -0.4730 -1.2505 27 1 -0.4849 0.8401 0.0004 28 1 3.8752 -0.6804 0.8888 29 1 3.6578 -3.1507 -0.8906 30 1 3.6585 -3.1502 0.8893 31 1 5.9148 -3.6643 -0.0004 32 1 5.9148 -2.1227 0.8889 33 1 5.6982 -2.4295 -2.1402 34 1 8.6308 -3.4685 -0.3369 35 1 7.2363 -4.0053 -1.3148 36 1 9.8606 -4.0225 -2.2369 37 1 8.4357 -3.8783 -3.3150 38 1 8.8537 -2.0886 -4.8834 39 1 11.7663 -2.3795 -4.0179 40 1 10.6664 -3.7178 -4.4271 41 1 10.3980 -2.7990 -6.7142 42 1 12.1099 -3.1308 -6.3559 43 1 11.8413 -0.9179 -7.4411 44 1 12.4521 -0.7442 -5.7786 45 1 9.5393 -0.4537 -6.6435 46 1 10.6390 0.8847 -6.2353 47 1 9.1958 0.2979 -4.3057 48 1 10.9077 -0.0341 -3.9475 49 1 7.3503 -1.2703 -3.2621 50 1 8.2768 -0.1707 -2.1954 51 1 5.9150 0.0409 -0.3605 52 1 5.9153 0.0408 -2.1403 53 1 3.6582 -0.9870 -2.1404 54 1 3.6582 0.5546 -1.2501 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173337621.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:04:38 Heat of formation + Delta-G solvation = -57.591905 kcal Electronic energy + Delta-G solvation = -26492.405932 eV Core-core repulsion = 23232.881169 eV Total energy + Delta-G solvation = -3259.524763 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 305.241 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.04849 -39.58636 -37.98172 -34.99332 -33.65128 -32.06405 -31.64062 -31.46586 -29.65839 -28.56005 -26.04510 -24.02877 -23.75870 -23.13266 -22.42531 -21.16789 -20.89511 -20.66992 -20.36973 -18.74380 -17.39913 -16.88848 -16.64539 -15.97098 -15.48694 -15.10699 -15.03223 -14.96496 -14.89773 -14.74175 -14.55950 -14.30141 -14.17546 -13.73183 -13.46483 -13.34135 -13.29291 -13.06269 -12.88524 -12.68542 -12.30329 -12.20780 -12.07464 -12.01268 -11.99552 -11.95015 -11.80824 -11.77625 -11.60225 -11.42211 -11.28077 -11.20966 -10.89297 -10.85117 -10.73572 -10.68890 -10.49408 -9.18581 -8.30164 -6.32916 1.28734 1.34788 1.45906 2.32221 2.98317 3.05676 3.56429 3.73053 3.74598 3.90113 3.91382 3.98017 4.09768 4.17237 4.31790 4.33831 4.41495 4.45993 4.47286 4.50786 4.55950 4.67023 4.68968 4.69076 4.71118 4.71628 4.75345 4.77636 4.78585 4.81791 4.86610 4.97695 5.00913 5.06061 5.08413 5.13934 5.16103 5.21007 5.25201 5.28285 5.29859 5.34622 5.35492 5.43821 5.46030 5.47744 5.51956 5.58258 5.66559 5.70715 5.80655 6.15681 6.22010 6.33368 6.74799 7.32656 8.86971 Molecular weight = 305.24amu Principal moments of inertia in cm(-1) A = 0.021941 B = 0.003117 C = 0.002853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.827246 B = 8979.671445 C = 9813.034603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.953 5.953 2 C 0.009 3.991 3 Si 0.950 3.050 4 H -0.268 1.268 5 H -0.300 1.300 6 H -0.247 1.247 7 C -0.518 4.518 8 H 0.032 0.968 9 C 0.013 3.987 10 C -0.093 4.093 11 C -0.100 4.100 12 C 0.095 3.905 13 N -0.534 5.534 14 C 0.036 3.964 15 C -0.128 4.128 16 C -0.081 4.081 17 H 0.084 0.916 18 C -0.070 4.070 19 C -0.109 4.109 20 C -0.120 4.120 21 C -0.118 4.118 22 C -0.120 4.120 23 C -0.114 4.114 24 C 0.048 3.952 25 C -0.103 4.103 26 C -0.115 4.115 27 H 0.265 0.735 28 H 0.020 0.980 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.032 0.968 34 H 0.080 0.920 35 H 0.053 0.947 36 H 0.088 0.912 37 H 0.064 0.936 38 H 0.058 0.942 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.055 0.945 42 H 0.068 0.932 43 H 0.063 0.937 44 H 0.063 0.937 45 H 0.054 0.946 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.065 0.935 49 H 0.037 0.963 50 H 0.073 0.927 51 H 0.060 0.940 52 H 0.064 0.936 53 H 0.050 0.950 54 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.228 -4.331 -11.187 30.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.594 5.594 2 C -0.187 4.187 3 Si 0.777 3.223 4 H -0.194 1.194 5 H -0.228 1.228 6 H -0.171 1.171 7 C -0.556 4.556 8 H 0.050 0.950 9 C -0.005 4.005 10 C -0.131 4.131 11 C -0.137 4.137 12 C -0.013 4.013 13 N -0.258 5.258 14 C -0.091 4.091 15 C -0.167 4.167 16 C -0.100 4.100 17 H 0.103 0.897 18 C -0.089 4.089 19 C -0.147 4.147 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.158 4.158 23 C -0.152 4.152 24 C -0.080 4.080 25 C -0.141 4.141 26 C -0.153 4.153 27 H 0.073 0.927 28 H 0.038 0.962 29 H 0.064 0.936 30 H 0.069 0.931 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.050 0.950 34 H 0.098 0.902 35 H 0.071 0.929 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.074 0.926 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.082 0.918 47 H 0.073 0.927 48 H 0.083 0.917 49 H 0.056 0.944 50 H 0.092 0.908 51 H 0.079 0.921 52 H 0.083 0.917 53 H 0.068 0.932 54 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 28.237 -3.989 -10.723 30.467 hybrid contribution -1.156 0.453 -0.610 1.383 sum 27.081 -3.537 -11.333 29.569 Atomic orbital electron populations 1.70062 1.08197 1.27904 1.53192 1.25901 0.95418 1.03025 0.94377 0.85815 0.79155 0.78730 0.78582 1.19387 1.22760 1.17077 1.21468 0.91859 0.92800 1.49431 0.94997 1.19117 0.93035 0.94543 0.93847 1.21329 0.94739 0.96616 1.00429 1.21561 0.94381 1.00181 0.97626 1.21610 0.87136 0.95566 0.96995 1.63601 1.06696 1.15128 1.40407 1.22902 0.97968 0.89020 0.99206 1.22796 0.99820 0.96888 0.97167 1.22289 0.96614 0.94679 0.96437 0.89726 1.21062 0.98137 0.95698 0.93975 1.21548 0.97395 0.99439 0.96286 1.21541 1.01271 0.96615 0.96307 1.21530 0.97816 0.94973 1.01236 1.21535 0.98346 0.99840 0.96080 1.21580 1.01209 0.95823 0.96561 1.23086 0.95558 0.98737 0.90592 1.21545 0.94374 0.96460 1.01746 1.21815 0.94948 0.98780 0.99724 0.92661 0.96162 0.93606 0.93150 0.90868 0.91891 0.94996 0.90200 0.92873 0.89309 0.91763 0.92312 0.91672 0.91650 0.92585 0.91373 0.91806 0.91820 0.92681 0.91837 0.92666 0.91662 0.94436 0.90829 0.92105 0.91732 0.93152 0.94846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.10 13.96 21.45 0.30 -60.80 16 2 C 0.01 0.55 5.45 84.65 0.46 1.01 16 3 Si 0.95 46.52 24.37 68.60 1.67 48.19 16 4 H -0.27 -12.48 6.87 99.48 0.68 -11.80 16 5 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 6 H -0.25 -11.30 6.53 99.48 0.65 -10.65 16 7 C -0.52 -30.29 9.14 25.60 0.23 -30.05 16 8 H 0.03 2.06 7.99 -2.91 -0.02 2.03 16 9 C 0.01 0.63 1.69 -11.54 -0.02 0.61 16 10 C -0.09 -3.70 5.14 30.59 0.16 -3.55 16 11 C -0.10 -3.17 5.07 30.60 0.16 -3.01 16 12 C 0.10 2.89 1.53 44.92 0.07 2.96 16 13 N -0.53 -13.57 5.03 -860.39 -4.33 -17.89 16 14 C 0.04 0.76 6.14 86.64 0.53 1.29 16 15 C -0.13 -2.10 5.34 31.77 0.17 -1.93 16 16 C -0.08 -1.36 2.56 -9.41 -0.02 -1.38 16 17 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 18 C -0.07 -1.03 1.70 -10.79 -0.02 -1.05 16 19 C -0.11 -1.34 5.00 30.60 0.15 -1.19 16 20 C -0.12 -1.39 5.92 30.60 0.18 -1.21 16 21 C -0.12 -1.37 5.92 30.60 0.18 -1.19 16 22 C -0.12 -1.62 5.92 30.59 0.18 -1.44 16 23 C -0.11 -1.68 5.05 30.59 0.15 -1.52 16 24 C 0.05 1.06 4.05 86.77 0.35 1.41 16 25 C -0.10 -3.53 5.09 30.59 0.16 -3.37 16 26 C -0.11 -4.89 4.69 30.59 0.14 -4.74 16 27 H 0.26 15.89 8.31 -92.71 -0.77 15.12 16 28 H 0.02 0.98 7.20 -2.39 -0.02 0.97 16 29 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 31 H 0.07 2.00 6.49 -2.39 -0.02 1.99 16 32 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 33 H 0.03 1.01 8.10 -2.39 -0.02 1.00 16 34 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 35 H 0.05 1.16 6.34 -2.39 -0.02 1.15 16 36 H 0.09 1.16 8.11 -2.39 -0.02 1.14 16 37 H 0.06 1.09 8.04 -2.39 -0.02 1.07 16 38 H 0.06 1.01 8.10 -2.39 -0.02 0.99 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.06 0.77 7.32 -2.39 -0.02 0.76 16 41 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 43 H 0.06 0.67 8.14 -2.39 -0.02 0.66 16 44 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.05 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.06 0.80 8.14 -2.39 -0.02 0.79 16 47 H 0.05 0.91 7.45 -2.38 -0.02 0.89 16 48 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 49 H 0.04 0.90 7.45 -2.39 -0.02 0.88 16 50 H 0.07 1.66 8.07 -2.39 -0.02 1.64 16 51 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 52 H 0.06 1.98 7.04 -2.38 -0.02 1.97 16 53 H 0.05 2.17 8.14 -2.38 -0.02 2.15 16 54 H 0.03 1.50 3.27 -2.39 -0.01 1.50 16 Total: -1.00 -64.74 380.69 1.59 -63.14 By element: Atomic # 1 Polarization: 14.98 SS G_CDS: 0.73 Total: 15.71 kcal Atomic # 6 Polarization: -51.57 SS G_CDS: 3.22 Total: -48.35 kcal Atomic # 7 Polarization: -74.67 SS G_CDS: -4.03 Total: -78.70 kcal Atomic # 14 Polarization: 46.52 SS G_CDS: 1.67 Total: 48.19 kcal Total: -64.74 1.59 -63.14 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173337621.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.552 kcal (2) G-P(sol) polarization free energy of solvation -64.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds