Wall clock time and date at job start Tue Mar 31 2020 09:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48500 * 109.47022 * 271.37896 * 3 2 1 5 5 H 1.48496 * 109.47229 * 31.37563 * 3 2 1 6 6 H 1.48498 * 109.47196 * 151.37862 * 3 2 1 7 7 C 1.37881 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99917 * 15.47707 * 7 2 1 9 9 C 1.50701 * 119.99980 * 195.48168 * 7 2 1 10 10 H 1.09006 * 109.46878 * 302.86610 * 9 7 2 11 11 C 1.52998 * 109.47358 * 62.86918 * 9 7 2 12 12 Cl 1.80299 * 109.46843 * 187.27056 * 11 9 7 13 13 O 1.42900 * 109.46686 * 182.87174 * 9 7 2 14 14 C 1.35943 * 116.99621 * 153.22341 * 13 9 7 15 15 C 1.38904 * 120.48133 * 283.43878 * 14 13 9 16 16 Cl 1.73606 * 119.66788 * 0.28172 * 15 14 13 17 17 N 1.31883 * 120.65556 * 180.27516 * 15 14 13 18 18 C 1.31917 * 121.76014 * 0.02562 * 17 15 14 19 19 C 1.38156 * 120.90029 * 0.02562 * 18 17 15 20 20 C 1.38636 * 119.24850 * 359.97438 * 19 18 17 21 21 N 1.48017 * 120.80032 * 179.97438 * 20 19 18 22 22 O 1.21805 * 120.00206 * 6.14892 * 21 20 19 23 23 O 1.21802 * 120.00155 * 186.15116 * 21 20 19 24 24 H 0.97001 * 119.99463 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47268 * 307.27199 * 11 9 7 26 26 H 1.08999 * 109.46781 * 67.27480 * 11 9 7 27 27 H 1.08002 * 119.54409 * 179.97438 * 18 17 15 28 28 H 1.08007 * 120.37034 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4675 2.0632 -1.3997 5 1 1.4615 2.6441 0.7289 6 1 3.5610 1.4319 0.6707 7 6 2.0046 -1.1941 0.0005 8 1 1.4940 -2.1125 -0.2486 9 6 3.4706 -1.2175 0.3489 10 1 4.0148 -0.5556 -0.3249 11 6 3.6596 -0.7444 1.7916 12 17 5.4197 -0.5680 2.1404 13 8 3.9706 -2.5495 0.2150 14 6 5.2941 -2.6866 -0.0635 15 6 5.7717 -2.4554 -1.3473 16 17 4.6694 -1.9808 -2.6017 17 7 7.0542 -2.5927 -1.6225 18 6 7.9275 -2.9517 -0.7013 19 6 7.5272 -3.1999 0.5975 20 6 6.1880 -3.0674 0.9306 21 7 5.7213 -3.3253 2.3114 22 8 6.5288 -3.5485 3.1955 23 8 4.5297 -3.3145 2.5635 24 1 -0.4849 0.8401 0.0004 25 1 3.1644 0.2171 1.9265 26 1 3.2256 -1.4756 2.4735 27 1 8.9695 -3.0537 -0.9663 28 1 8.2496 -3.4929 1.3450 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225430921.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:24 Heat of formation + Delta-G solvation = -3.139263 kcal Electronic energy + Delta-G solvation = -21623.583687 eV Core-core repulsion = 17924.272005 eV Total energy + Delta-G solvation = -3699.311682 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 306.001 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -42.05621 -40.53062 -38.27713 -36.65245 -36.18586 -35.50219 -33.69034 -32.96800 -31.19459 -29.86880 -27.01612 -25.40443 -23.94641 -22.98257 -21.53352 -19.48268 -18.68683 -17.86113 -17.53267 -17.05911 -16.89365 -16.02495 -15.69601 -14.94216 -14.69627 -14.16566 -13.74492 -13.19362 -13.06789 -12.85063 -12.48618 -11.90960 -11.44216 -11.31279 -11.18243 -11.16894 -11.06736 -11.00795 -10.71572 -10.64101 -10.26996 -10.11463 -9.87123 -9.71488 -9.42941 -8.85723 -8.82016 -6.53474 -4.54324 -0.21196 0.41152 1.31124 1.46604 1.80386 2.76005 2.98805 3.00172 3.07580 3.13825 3.56772 3.99136 4.00427 4.24213 4.51261 4.64351 4.77908 4.93632 5.19676 5.57721 5.68962 5.81556 5.91311 6.41816 6.61961 7.00149 7.15597 7.44855 7.91635 8.09667 8.63260 9.02416 10.56937 Molecular weight = 306.00amu Principal moments of inertia in cm(-1) A = 0.015648 B = 0.008355 C = 0.006538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.956463 B = 3350.674701 C = 4281.427501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.860 5.860 2 C 0.091 3.909 3 Si 0.841 3.159 4 H -0.266 1.266 5 H -0.274 1.274 6 H -0.251 1.251 7 C -0.523 4.523 8 H 0.098 0.902 9 C 0.207 3.793 10 H 0.033 0.967 11 C -0.049 4.049 12 Cl -0.249 7.249 13 O -0.287 6.287 14 C 0.154 3.846 15 C 0.142 3.858 16 Cl 0.022 6.978 17 N -0.430 5.430 18 C 0.101 3.899 19 C -0.104 4.104 20 C -0.001 4.001 21 N 0.039 4.961 22 O -0.175 6.175 23 O -0.105 6.105 24 H 0.274 0.726 25 H 0.101 0.899 26 H 0.115 0.885 27 H 0.186 0.814 28 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.568 -3.414 -0.874 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.494 5.494 2 C -0.116 4.116 3 Si 0.666 3.334 4 H -0.192 1.192 5 H -0.199 1.199 6 H -0.175 1.175 7 C -0.560 4.560 8 H 0.116 0.884 9 C 0.153 3.847 10 H 0.051 0.949 11 C -0.111 4.111 12 Cl -0.223 7.223 13 O -0.201 6.201 14 C 0.102 3.898 15 C -0.025 4.025 16 Cl 0.051 6.949 17 N -0.143 5.143 18 C -0.056 4.056 19 C -0.125 4.125 20 C -0.092 4.092 21 N 0.562 4.438 22 O -0.384 6.384 23 O -0.333 6.333 24 H 0.085 0.915 25 H 0.119 0.881 26 H 0.134 0.866 27 H 0.203 0.797 28 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 13.792 -3.086 -2.406 14.337 hybrid contribution 0.093 1.014 1.075 1.480 sum 13.886 -2.073 -1.331 14.102 Atomic orbital electron populations 1.69883 1.06074 1.27961 1.45512 1.24715 0.94672 0.98343 0.93844 0.87520 0.81440 0.84467 0.79972 1.19163 1.19918 1.17532 1.20508 0.89184 0.97083 1.49191 0.88361 1.20830 0.97057 0.76571 0.90207 0.94899 1.26733 0.76711 1.05151 1.02508 1.98645 1.28801 1.98329 1.96544 1.86265 1.13702 1.31323 1.88830 1.19167 0.87589 0.93472 0.89526 1.22347 0.90194 1.00689 0.89263 1.98484 1.57463 1.88950 1.50013 1.67114 1.00983 1.09446 1.36794 1.22702 0.99706 0.96253 0.86951 1.22129 0.93389 0.97306 0.99643 1.21784 0.94481 1.09566 0.83361 1.43060 1.01130 0.97973 1.01621 1.94491 1.51706 1.53149 1.39068 1.94633 0.98880 1.52193 1.87546 0.91524 0.88118 0.86634 0.79682 0.81378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -23.46 13.96 55.43 0.77 -22.69 15 2 C 0.09 2.33 5.31 -17.82 -0.09 2.24 15 3 Si 0.84 18.69 25.74 -169.99 -4.38 14.31 15 4 H -0.27 -5.91 7.11 56.52 0.40 -5.51 15 5 H -0.27 -6.04 7.11 56.52 0.40 -5.64 15 6 H -0.25 -5.32 5.44 56.52 0.31 -5.01 15 7 C -0.52 -13.25 9.34 -34.44 -0.32 -13.57 15 8 H 0.10 2.75 8.06 -52.49 -0.42 2.33 15 9 C 0.21 4.59 1.47 -27.88 -0.04 4.55 15 10 H 0.03 0.74 5.96 -51.93 -0.31 0.43 15 11 C -0.05 -1.02 4.73 37.16 0.18 -0.85 15 12 Cl -0.25 -4.82 23.71 -51.86 -1.23 -6.05 15 13 O -0.29 -6.08 7.62 -40.97 -0.31 -6.40 15 14 C 0.15 2.81 4.85 -39.05 -0.19 2.62 15 15 C 0.14 2.39 7.12 -17.28 -0.12 2.27 15 16 Cl 0.02 0.38 27.61 -51.86 -1.43 -1.05 15 17 N -0.43 -6.15 10.34 -10.24 -0.11 -6.25 15 18 C 0.10 1.09 11.17 -17.55 -0.20 0.90 15 19 C -0.10 -1.25 9.63 -39.46 -0.38 -1.63 15 20 C 0.00 -0.02 5.06 -79.52 -0.40 -0.42 15 21 N 0.04 0.70 2.98 34.17 0.10 0.80 15 22 O -0.18 -3.03 18.56 -29.46 -0.55 -3.57 15 23 O -0.11 -2.11 14.24 -36.29 -0.52 -2.62 15 24 H 0.27 6.97 8.31 -40.82 -0.34 6.63 15 25 H 0.10 2.12 4.75 -51.93 -0.25 1.88 15 26 H 0.12 2.44 6.72 -51.93 -0.35 2.09 15 27 H 0.19 1.12 8.06 -52.49 -0.42 0.70 15 28 H 0.17 1.53 7.72 -52.48 -0.40 1.13 15 LS Contribution 272.67 15.07 4.11 4.11 Total: -1.00 -27.77 272.67 -6.49 -34.26 By element: Atomic # 1 Polarization: 0.41 SS G_CDS: -1.38 Total: -0.97 kcal Atomic # 6 Polarization: -2.32 SS G_CDS: -1.57 Total: -3.89 kcal Atomic # 7 Polarization: -28.91 SS G_CDS: 0.77 Total: -28.14 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: -1.38 Total: -12.59 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -4.38 Total: 14.31 kcal Atomic # 17 Polarization: -4.43 SS G_CDS: -2.66 Total: -7.10 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -27.77 -6.49 -34.26 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225430921.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.123 kcal (2) G-P(sol) polarization free energy of solvation -27.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.262 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds