Wall clock time and date at job start Tue Mar 31 2020 09:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00060 * 2 1 4 4 H 1.48500 * 109.47022 * 271.37896 * 3 2 1 5 5 H 1.48496 * 109.47229 * 31.37563 * 3 2 1 6 6 H 1.48498 * 109.47196 * 151.37862 * 3 2 1 7 7 C 1.37881 * 120.00173 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99917 * 15.47707 * 7 2 1 9 9 C 1.50701 * 119.99980 * 195.48168 * 7 2 1 10 10 H 1.09006 * 109.46878 * 302.86610 * 9 7 2 11 11 C 1.52998 * 109.47358 * 62.86918 * 9 7 2 12 12 Cl 1.80299 * 109.46843 * 187.27056 * 11 9 7 13 13 O 1.42900 * 109.46686 * 182.87174 * 9 7 2 14 14 C 1.35943 * 116.99621 * 153.22341 * 13 9 7 15 15 C 1.38904 * 120.48133 * 283.43878 * 14 13 9 16 16 Cl 1.73606 * 119.66788 * 0.28172 * 15 14 13 17 17 N 1.31883 * 120.65556 * 180.27516 * 15 14 13 18 18 C 1.31917 * 121.76014 * 0.02562 * 17 15 14 19 19 C 1.38156 * 120.90029 * 0.02562 * 18 17 15 20 20 C 1.38636 * 119.24850 * 359.97438 * 19 18 17 21 21 N 1.48017 * 120.80032 * 179.97438 * 20 19 18 22 22 O 1.21805 * 120.00206 * 6.14892 * 21 20 19 23 23 O 1.21802 * 120.00155 * 186.15116 * 21 20 19 24 24 H 0.97001 * 119.99463 * 359.97438 * 1 2 3 25 25 H 1.08995 * 109.47268 * 307.27199 * 11 9 7 26 26 H 1.08999 * 109.46781 * 67.27480 * 11 9 7 27 27 H 1.08002 * 119.54409 * 179.97438 * 18 17 15 28 28 H 1.08007 * 120.37034 * 180.02562 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4675 2.0632 -1.3997 5 1 1.4615 2.6441 0.7289 6 1 3.5610 1.4319 0.6707 7 6 2.0046 -1.1941 0.0005 8 1 1.4940 -2.1125 -0.2486 9 6 3.4706 -1.2175 0.3489 10 1 4.0148 -0.5556 -0.3249 11 6 3.6596 -0.7444 1.7916 12 17 5.4197 -0.5680 2.1404 13 8 3.9706 -2.5495 0.2150 14 6 5.2941 -2.6866 -0.0635 15 6 5.7717 -2.4554 -1.3473 16 17 4.6694 -1.9808 -2.6017 17 7 7.0542 -2.5927 -1.6225 18 6 7.9275 -2.9517 -0.7013 19 6 7.5272 -3.1999 0.5975 20 6 6.1880 -3.0674 0.9306 21 7 5.7213 -3.3253 2.3114 22 8 6.5288 -3.5485 3.1955 23 8 4.5297 -3.3145 2.5635 24 1 -0.4849 0.8401 0.0004 25 1 3.1644 0.2171 1.9265 26 1 3.2256 -1.4756 2.4735 27 1 8.9695 -3.0537 -0.9663 28 1 8.2496 -3.4929 1.3450 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001225430921.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:23 Heat of formation + Delta-G solvation = -20.193999 kcal Electronic energy + Delta-G solvation = -21624.323236 eV Core-core repulsion = 17924.272005 eV Total energy + Delta-G solvation = -3700.051231 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 306.001 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.38126 -41.77634 -39.71630 -37.92727 -37.56329 -37.10335 -35.46599 -34.27291 -32.75086 -31.27935 -28.31619 -27.26281 -25.21151 -24.22591 -23.17176 -20.76569 -19.99633 -19.49531 -18.96694 -18.62448 -18.23485 -17.34001 -17.20322 -16.08634 -16.03372 -15.67447 -15.33184 -14.83680 -14.71661 -14.22180 -14.08775 -13.26479 -13.08666 -12.80996 -12.71616 -12.57819 -12.48918 -12.43379 -12.20148 -12.08888 -11.91790 -11.72177 -11.48606 -11.16809 -10.91834 -10.75392 -10.12919 -8.52025 -6.57587 -1.47462 -0.73415 0.04536 0.15819 0.56333 1.09102 1.22086 1.29357 1.32699 1.85518 2.13450 2.28023 2.79121 2.92379 3.06785 3.45087 3.48146 3.83947 3.86400 4.10850 4.18208 4.28330 4.79425 4.85375 5.13744 5.18300 5.73801 6.09450 6.29701 6.50401 6.54422 7.02998 8.63010 Molecular weight = 306.00amu Principal moments of inertia in cm(-1) A = 0.015648 B = 0.008355 C = 0.006538 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1788.956463 B = 3350.674701 C = 4281.427501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.907 5.907 2 C 0.049 3.951 3 Si 0.898 3.102 4 H -0.262 1.262 5 H -0.268 1.268 6 H -0.235 1.235 7 C -0.528 4.528 8 H 0.054 0.946 9 C 0.219 3.781 10 H 0.034 0.966 11 C -0.044 4.044 12 Cl -0.226 7.226 13 O -0.307 6.307 14 C 0.116 3.884 15 C 0.131 3.869 16 Cl 0.003 6.997 17 N -0.434 5.434 18 C 0.131 3.869 19 C -0.082 4.082 20 C -0.014 4.014 21 N 0.040 4.960 22 O -0.133 6.133 23 O -0.177 6.177 24 H 0.278 0.722 25 H 0.099 0.901 26 H 0.106 0.894 27 H 0.248 0.752 28 H 0.211 0.789 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.082 -3.007 -0.605 18.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.154 4.154 3 Si 0.720 3.280 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.158 1.158 7 C -0.565 4.565 8 H 0.072 0.928 9 C 0.165 3.835 10 H 0.052 0.948 11 C -0.107 4.107 12 Cl -0.201 7.201 13 O -0.222 6.222 14 C 0.066 3.934 15 C -0.034 4.034 16 Cl 0.031 6.969 17 N -0.147 5.147 18 C -0.027 4.027 19 C -0.102 4.102 20 C -0.105 4.105 21 N 0.560 4.440 22 O -0.356 6.356 23 O -0.386 6.386 24 H 0.088 0.912 25 H 0.117 0.883 26 H 0.125 0.875 27 H 0.264 0.736 28 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 18.149 -2.674 -2.181 18.474 hybrid contribution -0.922 0.698 1.028 1.548 sum 17.226 -1.976 -1.153 17.378 Atomic orbital electron populations 1.69994 1.07822 1.29085 1.47416 1.25405 0.95218 1.01576 0.93229 0.86605 0.80930 0.80180 0.80322 1.18689 1.19217 1.15780 1.20536 0.91179 0.95610 1.49209 0.92781 1.20423 0.94860 0.77724 0.90539 0.94845 1.26336 0.78012 1.04676 1.01667 1.98627 1.26769 1.98267 1.96392 1.86225 1.16200 1.30453 1.89291 1.19353 0.86658 0.96658 0.90773 1.22230 0.91021 1.01760 0.88339 1.98471 1.58576 1.89256 1.50560 1.67230 1.00001 1.09671 1.37845 1.23833 1.01375 0.92021 0.85477 1.22800 0.91756 0.94544 1.01148 1.22039 0.95917 1.10580 0.81936 1.43314 1.00894 0.97426 1.02358 1.94434 1.51246 1.50268 1.39671 1.94679 0.99619 1.56069 1.88271 0.91212 0.88268 0.87518 0.73577 0.77257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.62 13.96 21.45 0.30 -51.32 15 2 C 0.05 2.59 5.31 84.66 0.45 3.04 15 3 Si 0.90 38.83 25.74 68.60 1.77 40.59 15 4 H -0.26 -11.10 7.11 99.48 0.71 -10.40 15 5 H -0.27 -11.24 7.11 99.48 0.71 -10.53 15 6 H -0.23 -9.40 5.44 99.48 0.54 -8.85 15 7 C -0.53 -28.24 9.34 25.60 0.24 -28.00 15 8 H 0.05 3.29 8.06 -2.91 -0.02 3.26 15 9 C 0.22 9.94 1.47 29.85 0.04 9.99 15 10 H 0.03 1.51 5.96 -2.38 -0.01 1.50 15 11 C -0.04 -1.88 4.73 71.98 0.34 -1.54 15 12 Cl -0.23 -8.36 23.71 -2.72 -0.06 -8.42 15 13 O -0.31 -13.47 7.62 -72.43 -0.55 -14.02 15 14 C 0.12 4.16 4.85 22.61 0.11 4.27 15 15 C 0.13 4.23 7.12 84.84 0.60 4.84 15 16 Cl 0.00 0.09 27.61 -2.72 -0.08 0.02 15 17 N -0.43 -10.81 10.34 -186.32 -1.93 -12.74 15 18 C 0.13 2.04 11.17 84.66 0.95 2.99 15 19 C -0.08 -1.53 9.63 22.35 0.22 -1.31 15 20 C -0.01 -0.42 5.06 36.65 0.19 -0.23 15 21 N 0.04 1.37 2.98 -45.80 -0.14 1.23 15 22 O -0.13 -4.16 18.56 18.88 0.35 -3.81 15 23 O -0.18 -7.21 14.24 25.41 0.36 -6.84 15 24 H 0.28 14.64 8.31 -92.71 -0.77 13.87 15 25 H 0.10 4.17 4.75 -2.39 -0.01 4.15 15 26 H 0.11 4.70 6.72 -2.39 -0.02 4.68 15 27 H 0.25 0.83 8.06 -2.91 -0.02 0.81 15 28 H 0.21 2.24 7.72 -2.91 -0.02 2.21 15 Total: -1.00 -64.81 272.67 4.23 -60.58 By element: Atomic # 1 Polarization: -0.37 SS G_CDS: 1.07 Total: 0.70 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 3.13 Total: -5.97 kcal Atomic # 7 Polarization: -61.06 SS G_CDS: -1.76 Total: -62.83 kcal Atomic # 8 Polarization: -24.83 SS G_CDS: 0.16 Total: -24.67 kcal Atomic # 14 Polarization: 38.83 SS G_CDS: 1.77 Total: 40.59 kcal Atomic # 17 Polarization: -8.27 SS G_CDS: -0.14 Total: -8.41 kcal Total: -64.81 4.23 -60.58 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225430921.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.385 kcal (2) G-P(sol) polarization free energy of solvation -64.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds