Wall clock time and date at job start Tue Mar 31 2020 09:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00349 * 2 1 4 4 H 1.48496 * 109.47237 * 240.00486 * 3 2 1 5 5 H 1.48503 * 109.46821 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.47196 * 120.00004 * 3 2 1 7 7 C 1.37881 * 120.00013 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00302 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00008 * 359.97438 * 7 2 1 10 10 H 1.08997 * 109.47061 * 300.00718 * 9 7 2 11 11 C 1.53007 * 109.46770 * 60.00536 * 9 7 2 12 12 Cl 1.80292 * 109.46945 * 185.00030 * 11 9 7 13 13 O 1.42897 * 109.47015 * 179.97438 * 9 7 2 14 14 C 1.35903 * 116.99343 * 146.94450 * 13 9 7 15 15 C 1.38726 * 120.06029 * 356.51409 * 14 13 9 16 16 C 1.38141 * 119.94593 * 179.75170 * 15 14 13 17 17 C 1.38273 * 120.05705 * 0.25014 * 16 15 14 18 18 S 1.76196 * 119.94652 * 179.97438 * 17 16 15 19 19 O 1.42094 * 106.40557 * 203.53879 * 18 17 16 20 20 O 1.42098 * 106.40202 * 336.46215 * 18 17 16 21 21 O 1.52206 * 107.21786 * 89.99615 * 18 17 16 22 22 C 1.38262 * 120.10888 * 0.02562 * 17 16 15 23 23 C 1.38148 * 120.05825 * 0.02562 * 22 17 16 24 24 H 0.96996 * 120.00130 * 359.97438 * 1 2 3 25 25 H 1.09000 * 109.46616 * 304.99483 * 11 9 7 26 26 H 1.08994 * 109.47009 * 64.99621 * 11 9 7 27 27 H 1.07998 * 120.02927 * 0.02562 * 15 14 13 28 28 H 1.08003 * 119.97331 * 180.27480 * 16 15 14 29 29 H 0.96698 * 114.00000 * 179.97438 * 21 18 17 30 30 H 1.07994 * 119.97440 * 180.02562 * 22 17 16 31 31 H 1.07993 * 120.02879 * 180.02562 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6963 -1.2125 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1941 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 1 0.6247 -2.5571 0.8896 11 6 0.3710 -2.5800 -1.2496 12 17 -0.6394 -4.0714 -1.1774 13 8 2.1797 -3.5853 -0.0017 14 6 1.8096 -4.7140 0.6586 15 6 0.6104 -4.7501 1.3551 16 6 0.2341 -5.9003 2.0212 17 6 1.0541 -7.0135 1.9984 18 16 0.5716 -8.4788 2.8496 19 8 1.7670 -9.1978 3.1202 20 8 -0.3377 -8.0730 3.8633 21 8 -0.2274 -9.3265 1.8699 22 6 2.2524 -6.9783 1.3097 23 6 2.6337 -5.8301 0.6428 24 1 -0.4850 0.8400 0.0004 25 1 -0.2764 -1.7043 -1.2950 26 1 1.0025 -2.6115 -2.1375 27 1 -0.0306 -3.8811 1.3730 28 1 -0.7015 -5.9303 2.5599 29 1 -0.5431 -10.1624 2.2396 30 1 2.8909 -7.8491 1.2929 31 1 3.5697 -5.8032 0.1047 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001225513829.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:15:14 Heat of formation + Delta-G solvation = -148.671276 kcal Electronic energy + Delta-G solvation = -20691.736940 eV Core-core repulsion = 17091.698566 eV Total energy + Delta-G solvation = -3600.038374 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 306.021 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.74316 -38.38407 -37.24741 -37.18635 -35.91246 -35.01046 -33.61604 -30.95936 -30.29167 -29.05931 -25.48252 -23.39277 -22.81070 -21.31633 -20.56089 -18.43594 -18.28510 -17.31122 -17.05668 -16.32778 -15.47952 -15.25943 -14.81016 -14.73654 -14.35792 -13.56397 -13.48322 -13.22050 -13.03974 -12.76894 -12.50442 -12.34357 -12.18632 -12.13530 -12.01555 -11.87403 -11.30801 -11.14666 -11.02784 -10.85141 -10.68953 -10.36449 -9.88518 -9.59569 -9.38394 -8.81370 -8.75151 -7.92071 -6.55975 -4.64896 0.47115 1.22462 1.62440 3.05912 3.06376 3.13753 3.15671 3.25153 3.42530 3.82937 3.94210 4.20803 4.58233 4.80579 5.05728 5.12866 5.50937 5.66263 5.76297 5.82686 6.02449 6.08249 6.15869 6.26092 6.36561 6.55658 6.73852 6.93740 7.04399 7.40508 7.59120 8.05330 8.49160 9.03508 10.51116 Molecular weight = 306.02amu Principal moments of inertia in cm(-1) A = 0.026928 B = 0.003884 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.549084 B = 7206.843483 C = 7509.390409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.919 3.081 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.271 1.271 7 C -0.527 4.527 8 H 0.078 0.922 9 C 0.201 3.799 10 H 0.056 0.944 11 C -0.037 4.037 12 Cl -0.239 7.239 13 O -0.301 6.301 14 C 0.219 3.781 15 C -0.215 4.215 16 C 0.018 3.982 17 C -0.724 4.724 18 S 2.723 3.277 19 O -0.979 6.979 20 O -0.977 6.977 21 O -0.893 6.893 22 C 0.015 3.985 23 C -0.190 4.190 24 H 0.275 0.725 25 H 0.137 0.863 26 H 0.077 0.923 27 H 0.149 0.851 28 H 0.137 0.863 29 H 0.453 0.547 30 H 0.140 0.860 31 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.674 -12.765 1.463 12.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.524 5.524 2 C -0.138 4.138 3 Si 0.745 3.255 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.196 1.196 7 C -0.564 4.564 8 H 0.096 0.904 9 C 0.147 3.853 10 H 0.073 0.927 11 C -0.100 4.100 12 Cl -0.214 7.214 13 O -0.212 6.212 14 C 0.169 3.831 15 C -0.235 4.235 16 C -0.002 4.002 17 C -0.815 4.815 18 S 2.815 3.185 19 O -0.978 6.978 20 O -0.976 6.976 21 O -0.761 6.761 22 C -0.004 4.004 23 C -0.210 4.210 24 H 0.085 0.915 25 H 0.154 0.846 26 H 0.095 0.905 27 H 0.166 0.834 28 H 0.154 0.846 29 H 0.321 0.679 30 H 0.157 0.843 31 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.743 -12.748 1.472 12.854 hybrid contribution 0.116 1.163 -0.263 1.198 sum -0.627 -11.585 1.209 11.665 Atomic orbital electron populations 1.69771 1.06033 1.28478 1.48112 1.24985 0.95220 0.99932 0.93670 0.86182 0.79302 0.80729 0.79247 1.19660 1.20751 1.19629 1.20949 0.94383 0.87661 1.53434 0.90428 1.20718 0.87464 0.82727 0.94428 0.92654 1.25792 0.95465 0.86935 1.01798 1.98650 1.75797 1.47928 1.98980 1.86197 1.46621 1.21427 1.66939 1.19510 0.90990 0.86876 0.85723 1.21645 0.98677 1.00738 1.02415 1.20602 0.96753 0.90772 0.92054 1.29742 1.07388 1.18769 1.25582 1.00284 0.72820 0.74107 0.71259 1.93592 1.49536 1.71439 1.83242 1.93603 1.63738 1.83695 1.56560 1.85605 1.79624 1.44455 1.66373 1.20547 0.92615 0.97411 0.89836 1.20491 1.01928 0.92049 1.06528 0.91537 0.84556 0.90472 0.83388 0.84557 0.67889 0.84256 0.84691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.13 11.29 55.43 0.63 -21.50 16 2 C 0.07 1.61 5.29 -17.82 -0.09 1.51 16 3 Si 0.92 19.19 29.54 -169.99 -5.02 14.17 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.68 7.11 56.52 0.40 -5.27 16 7 C -0.53 -13.09 8.89 -34.44 -0.31 -13.40 16 8 H 0.08 1.94 7.81 -52.49 -0.41 1.53 16 9 C 0.20 4.62 2.19 -27.88 -0.06 4.56 16 10 H 0.06 1.34 5.39 -51.93 -0.28 1.06 16 11 C -0.04 -0.81 6.17 37.16 0.23 -0.58 16 12 Cl -0.24 -4.70 25.62 -51.86 -1.33 -6.03 16 13 O -0.30 -6.54 9.73 -19.44 -0.19 -6.73 16 14 C 0.22 4.23 5.96 -39.21 -0.23 3.99 16 15 C -0.22 -4.01 7.05 -39.44 -0.28 -4.29 16 16 C 0.02 0.29 9.51 -39.60 -0.38 -0.09 16 17 C -0.72 -10.70 5.96 -39.56 -0.24 -10.93 16 18 S 2.72 31.57 5.96 -107.50 -0.64 30.92 16 19 O -0.98 -13.31 17.27 -66.81 -1.15 -14.46 16 20 O -0.98 -13.87 17.27 -66.81 -1.15 -15.02 16 21 O -0.89 -7.53 13.45 -67.36 -0.91 -8.44 16 22 C 0.02 0.23 9.51 -39.61 -0.38 -0.15 16 23 C -0.19 -3.16 9.99 -39.43 -0.39 -3.55 16 24 H 0.27 6.53 8.31 -40.82 -0.34 6.19 16 25 H 0.14 3.16 5.95 -51.93 -0.31 2.85 16 26 H 0.08 1.62 8.14 -51.93 -0.42 1.20 16 27 H 0.15 2.90 5.12 -52.49 -0.27 2.63 16 28 H 0.14 1.95 7.61 -52.48 -0.40 1.55 16 29 H 0.45 1.10 9.03 67.38 0.61 1.71 16 30 H 0.14 1.66 7.61 -52.49 -0.40 1.26 16 31 H 0.14 1.98 8.06 -52.49 -0.42 1.55 16 LS Contribution 295.02 15.07 4.45 4.45 Total: -1.00 -31.05 295.02 -8.89 -39.94 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -1.44 Total: 5.62 kcal Atomic # 6 Polarization: -20.79 SS G_CDS: -2.13 Total: -22.92 kcal Atomic # 7 Polarization: -22.13 SS G_CDS: 0.63 Total: -21.50 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -3.40 Total: -44.65 kcal Atomic # 14 Polarization: 19.19 SS G_CDS: -5.02 Total: 14.17 kcal Atomic # 16 Polarization: 31.57 SS G_CDS: -0.64 Total: 30.92 kcal Atomic # 17 Polarization: -4.70 SS G_CDS: -1.33 Total: -6.03 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -31.05 -8.89 -39.94 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001225513829.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.736 kcal (2) G-P(sol) polarization free energy of solvation -31.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds