Wall clock time and date at job start Tue Mar 31 2020 09:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31507 * 1 3 3 Si 1.86807 * 119.99762 * 2 1 4 4 H 1.48504 * 109.46788 * 180.02562 * 3 2 1 5 5 H 1.48505 * 109.46811 * 300.00065 * 3 2 1 6 6 H 1.48495 * 109.47130 * 60.00027 * 3 2 1 7 7 C 1.37877 * 120.00417 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00084 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99839 * 0.02562 * 7 2 1 10 10 H 1.09001 * 109.46965 * 299.99578 * 9 7 2 11 11 C 1.52998 * 109.46958 * 59.99468 * 9 7 2 12 12 Cl 1.80306 * 109.46890 * 185.00158 * 11 9 7 13 13 O 1.42893 * 109.47191 * 179.97438 * 9 7 2 14 14 C 1.35682 * 117.00277 * 149.99775 * 13 9 7 15 15 N 1.32303 * 119.67427 * 359.97438 * 14 13 9 16 16 C 1.31954 * 121.68099 * 179.97438 * 15 14 13 17 17 C 1.38030 * 120.84543 * 0.03017 * 16 15 14 18 18 C 1.38935 * 119.27382 * 359.96843 * 17 16 15 19 19 Cl 1.73595 * 120.77185 * 180.02562 * 18 17 16 20 20 C 1.38565 * 118.45366 * 0.02562 * 18 17 16 21 21 N 1.48012 * 120.45095 * 179.97438 * 20 18 17 22 22 O 1.21801 * 119.99966 * 89.99599 * 21 20 18 23 23 O 1.21796 * 119.99988 * 270.00536 * 21 20 18 24 24 H 0.96998 * 120.00526 * 359.97438 * 1 2 3 25 25 H 1.08994 * 109.47604 * 304.99913 * 11 9 7 26 26 H 1.08995 * 109.47092 * 65.00482 * 11 9 7 27 27 H 1.07999 * 119.57658 * 180.02562 * 16 15 14 28 28 H 1.08003 * 120.36489 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 1 0.6242 -2.5567 0.8903 11 6 0.3719 -2.5804 -1.2490 12 17 -0.6386 -4.0720 -1.1767 13 8 2.1797 -3.5852 0.0005 14 6 1.7843 -4.7338 0.6050 15 7 0.5845 -4.8034 1.1583 16 6 0.1595 -5.9004 1.7559 17 6 0.9590 -7.0233 1.8258 18 6 2.2262 -6.9915 1.2571 19 17 3.2639 -8.3817 1.3219 20 6 2.6425 -5.8244 0.6369 21 7 3.9840 -5.7416 0.0171 22 8 4.1350 -6.0500 -1.1515 23 8 4.9369 -5.3652 0.6756 24 1 -0.4851 0.8400 0.0004 25 1 -0.2756 -1.7049 -1.2953 26 1 1.0038 -2.6124 -2.1364 27 1 -0.8266 -5.9198 2.1959 28 1 0.6035 -7.9169 2.3172 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001228014333.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:13:22 Heat of formation + Delta-G solvation = -16.051992 kcal Electronic energy + Delta-G solvation = -20888.828537 eV Core-core repulsion = 17188.956916 eV Total energy + Delta-G solvation = -3699.871620 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 306.001 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.98326 -40.53096 -38.16782 -37.12571 -36.18454 -34.99303 -33.68813 -32.85437 -31.29601 -29.44719 -26.58103 -25.48552 -24.15821 -22.96120 -21.33128 -19.35763 -18.53137 -18.20916 -18.05649 -16.88812 -16.27487 -15.72089 -15.42835 -15.01565 -14.46087 -13.95140 -13.74622 -13.43739 -13.05160 -12.46281 -12.19141 -11.93693 -11.69128 -11.39715 -11.32185 -11.17188 -11.06758 -10.98796 -10.80573 -10.51784 -10.19608 -10.00952 -9.71519 -9.49752 -9.42211 -8.84346 -8.52395 -6.55162 -4.64852 0.37301 0.81057 0.83049 1.20327 1.62432 3.05654 3.11876 3.17326 3.24256 3.31988 3.34441 4.06393 4.12959 4.39133 4.60294 4.69956 4.82381 5.22199 5.34809 5.80801 6.07073 6.09987 6.46295 6.63514 6.99037 7.28014 7.49357 7.64906 7.73164 7.87593 8.46807 9.03176 10.51688 Molecular weight = 306.00amu Principal moments of inertia in cm(-1) A = 0.018720 B = 0.005401 C = 0.004698 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.383146 B = 5182.699247 C = 5958.105347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.068 3.932 3 Si 0.919 3.081 4 H -0.267 1.267 5 H -0.278 1.278 6 H -0.278 1.278 7 C -0.530 4.530 8 H 0.078 0.922 9 C 0.212 3.788 10 H 0.074 0.926 11 C -0.033 4.033 12 Cl -0.235 7.235 13 O -0.287 6.287 14 C 0.411 3.589 15 N -0.483 5.483 16 C 0.194 3.806 17 C -0.214 4.214 18 C 0.076 3.924 19 Cl -0.024 7.024 20 C -0.124 4.124 21 N 0.038 4.962 22 O -0.133 6.133 23 O -0.132 6.132 24 H 0.274 0.726 25 H 0.139 0.861 26 H 0.073 0.927 27 H 0.183 0.817 28 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.961 -11.941 3.622 12.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.191 1.191 5 H -0.203 1.203 6 H -0.203 1.203 7 C -0.568 4.568 8 H 0.097 0.903 9 C 0.158 3.842 10 H 0.092 0.908 11 C -0.096 4.096 12 Cl -0.209 7.209 13 O -0.191 6.191 14 C 0.230 3.770 15 N -0.207 5.207 16 C 0.034 3.966 17 C -0.236 4.236 18 C 0.041 3.959 19 Cl 0.006 6.994 20 C -0.209 4.209 21 N 0.569 4.431 22 O -0.357 6.357 23 O -0.356 6.356 24 H 0.084 0.916 25 H 0.157 0.843 26 H 0.092 0.908 27 H 0.199 0.801 28 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -2.068 -11.196 3.732 11.982 hybrid contribution 0.975 -0.020 -0.157 0.988 sum -1.093 -11.217 3.574 11.823 Atomic orbital electron populations 1.69803 1.05994 1.28254 1.47981 1.24957 0.95238 0.99836 0.93585 0.86068 0.80100 0.81212 0.78092 1.19087 1.20332 1.20326 1.21024 0.94490 0.87473 1.53802 0.90342 1.20837 0.86899 0.80688 0.95740 0.90817 1.25678 0.95448 0.87274 1.01162 1.98631 1.75614 1.47731 1.98971 1.86436 1.45946 1.19255 1.67493 1.19342 0.86101 0.86104 0.85411 1.68148 1.11959 1.28293 1.12313 1.22941 0.99164 0.85832 0.88679 1.21894 0.92266 1.02828 1.06607 1.20612 0.93052 0.86931 0.95340 1.98443 1.65534 1.38836 1.96636 1.20677 0.88035 0.97073 1.15163 1.42907 1.01675 0.97904 1.00571 1.94538 1.90883 1.50170 1.00079 1.94541 1.31277 1.46774 1.62975 0.91633 0.84342 0.90798 0.80059 0.82043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -22.44 11.29 55.43 0.63 -21.81 15 2 C 0.07 1.70 5.29 -17.82 -0.09 1.60 15 3 Si 0.92 19.67 29.54 -169.99 -5.02 14.65 15 4 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 5 H -0.28 -5.85 7.11 56.52 0.40 -5.45 15 6 H -0.28 -5.89 7.11 56.52 0.40 -5.48 15 7 C -0.53 -13.69 8.89 -34.44 -0.31 -13.99 15 8 H 0.08 2.07 7.81 -52.49 -0.41 1.66 15 9 C 0.21 5.09 2.25 -27.88 -0.06 5.03 15 10 H 0.07 1.87 6.98 -51.93 -0.36 1.50 15 11 C -0.03 -0.74 6.17 37.16 0.23 -0.51 15 12 Cl -0.24 -4.71 25.91 -51.86 -1.34 -6.05 15 13 O -0.29 -6.65 9.50 -18.75 -0.18 -6.83 15 14 C 0.41 8.17 6.64 -17.14 -0.11 8.05 15 15 N -0.48 -8.53 6.36 -13.35 -0.08 -8.62 15 16 C 0.19 2.43 11.17 -17.58 -0.20 2.24 15 17 C -0.21 -2.41 9.93 -39.40 -0.39 -2.80 15 18 C 0.08 1.10 6.37 -39.20 -0.25 0.85 15 19 Cl -0.02 -0.30 28.58 -51.86 -1.48 -1.78 15 20 C -0.12 -2.25 6.20 -79.62 -0.49 -2.75 15 21 N 0.04 0.74 3.60 34.12 0.12 0.86 15 22 O -0.13 -2.65 19.25 -29.46 -0.57 -3.22 15 23 O -0.13 -2.63 19.25 -29.46 -0.57 -3.20 15 24 H 0.27 6.55 8.31 -40.82 -0.34 6.21 15 25 H 0.14 3.32 5.95 -51.93 -0.31 3.01 15 26 H 0.07 1.64 8.14 -51.93 -0.42 1.22 15 27 H 0.18 1.53 8.06 -52.49 -0.42 1.11 15 28 H 0.16 1.17 8.06 -52.48 -0.42 0.75 15 LS Contribution 290.82 15.07 4.38 4.38 Total: -1.00 -27.44 290.82 -7.28 -34.72 By element: Atomic # 1 Polarization: 0.67 SS G_CDS: -1.48 Total: -0.81 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -1.68 Total: -2.28 kcal Atomic # 7 Polarization: -30.23 SS G_CDS: 0.66 Total: -29.57 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -1.31 Total: -13.25 kcal Atomic # 14 Polarization: 19.67 SS G_CDS: -5.02 Total: 14.65 kcal Atomic # 17 Polarization: -5.01 SS G_CDS: -2.83 Total: -7.84 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -27.44 -7.28 -34.72 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228014333.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.664 kcal (2) G-P(sol) polarization free energy of solvation -27.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds