Wall clock time and date at job start Tue Mar 31 2020 09:14:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81396 * 1 3 3 C 1.76196 * 103.00209 * 2 1 4 4 C 1.38882 * 120.10005 * 89.99930 * 3 2 1 5 5 Cl 1.73602 * 120.02235 * 0.02562 * 4 3 2 6 6 C 1.38287 * 119.95719 * 179.74925 * 4 3 2 7 7 C 1.38273 * 120.15004 * 0.25477 * 6 4 3 8 8 C 1.38287 * 120.19985 * 359.97438 * 7 6 4 9 9 C 1.38525 * 120.03887 * 0.02562 * 8 7 6 10 10 O 1.36009 * 120.07367 * 180.02562 * 9 8 7 11 11 C 1.42900 * 117.00179 * 1.91131 * 10 9 8 12 12 H 1.09009 * 109.47082 * 22.38020 * 11 10 9 13 13 C 1.50695 * 109.47514 * 142.37891 * 11 10 9 14 14 H 1.08007 * 119.99982 * 25.65995 * 13 11 10 15 15 C 1.37877 * 120.00354 * 205.66448 * 13 11 10 16 16 N 1.31512 * 119.99870 * 185.08838 * 15 13 11 17 17 Si 1.86798 * 120.00112 * 5.08802 * 15 13 11 18 18 H 1.48498 * 109.47127 * 94.41335 * 17 15 13 19 19 H 1.48493 * 109.47256 * 214.41690 * 17 15 13 20 20 H 1.48498 * 109.46939 * 334.41574 * 17 15 13 21 21 C 1.53000 * 109.47182 * 262.38148 * 11 10 9 22 22 Cl 1.80296 * 109.47381 * 63.10103 * 21 11 10 23 23 H 1.09002 * 109.47569 * 300.00285 * 1 2 3 24 24 H 1.09006 * 109.46966 * 60.00313 * 1 2 3 25 25 H 1.08997 * 109.47494 * 179.97438 * 1 2 3 26 26 H 1.08002 * 119.92415 * 180.22479 * 6 4 3 27 27 H 1.08007 * 119.89911 * 180.02562 * 7 6 4 28 28 H 1.07997 * 119.98259 * 179.97438 * 8 7 6 29 29 H 0.97003 * 120.00259 * 180.02562 * 16 15 13 30 30 H 1.09009 * 109.47106 * 183.09938 * 21 11 10 31 31 H 1.08996 * 109.47225 * 303.09749 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2104 1.7168 0.0000 4 6 2.3671 2.3954 1.2015 5 17 2.1731 1.5527 2.7068 6 6 2.6833 3.7417 1.1981 7 6 2.8388 4.4155 0.0007 8 6 2.6796 3.7471 -1.1994 9 6 2.3628 2.3985 -1.2053 10 8 2.2066 1.7403 -2.3852 11 6 2.4250 2.4915 -3.5811 12 1 3.0553 3.3528 -3.3591 13 6 3.1071 1.6203 -4.6041 14 1 2.9887 0.5475 -4.5650 15 6 3.8826 2.1927 -5.5901 16 7 4.3958 1.4432 -6.5410 17 14 4.2040 4.0328 -5.5752 18 1 5.4892 4.3051 -4.8829 19 1 4.2778 4.5337 -6.9712 20 1 3.1005 4.7222 -4.8596 21 6 1.0817 2.9716 -4.1343 22 17 0.3072 4.0869 -2.9482 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 -1.0276 -0.0005 26 1 2.8086 4.2681 2.1328 27 1 3.0862 5.4668 0.0028 28 1 2.8015 4.2769 -2.1325 29 1 4.9417 1.8457 -7.2345 30 1 1.2434 3.4974 -5.0754 31 1 0.4314 2.1137 -4.3046 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001234246712.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:14:58 Heat of formation + Delta-G solvation = -26.934269 kcal Electronic energy + Delta-G solvation = -18736.677884 eV Core-core repulsion = 15582.627587 eV Total energy + Delta-G solvation = -3154.050297 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 305.999 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.80345 -37.48471 -36.12405 -35.28604 -33.37834 -31.22173 -30.37757 -29.29876 -28.50805 -25.42666 -23.29099 -22.64819 -20.52774 -18.54410 -17.14876 -16.63620 -15.92666 -15.24191 -14.95917 -14.78261 -14.38921 -13.70804 -13.52714 -13.46019 -13.19931 -13.11390 -12.91227 -12.56510 -12.23216 -11.78814 -11.75140 -11.33147 -11.17995 -11.05593 -10.88530 -10.80924 -10.17633 -10.06989 -9.96209 -9.73079 -9.44075 -8.96895 -8.58300 -7.78517 -7.22163 -6.52216 -4.59040 1.04098 1.53927 1.96479 2.29921 2.82642 2.97836 2.99339 3.03930 3.10065 3.81704 3.87513 3.99259 4.78597 5.04454 5.14609 5.26373 5.39837 5.44191 5.47096 5.63469 5.67912 5.79936 5.93013 5.97292 6.15958 6.28948 6.48523 6.52433 6.76389 7.05249 7.72987 8.19216 8.63714 9.02891 10.58369 Molecular weight = 306.00amu Principal moments of inertia in cm(-1) A = 0.017949 B = 0.005619 C = 0.005342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.610264 B = 4981.696780 C = 5239.750470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.115 6.115 3 C -0.169 4.169 4 C 0.042 3.958 5 Cl -0.057 7.057 6 C -0.175 4.175 7 C -0.047 4.047 8 C -0.207 4.207 9 C 0.213 3.787 10 O -0.273 6.273 11 C 0.174 3.826 12 H 0.051 0.949 13 C -0.525 4.525 14 H 0.095 0.905 15 C 0.087 3.913 16 N -0.867 5.867 17 Si 0.856 3.144 18 H -0.266 1.266 19 H -0.275 1.275 20 H -0.256 1.256 21 C -0.039 4.039 22 Cl -0.230 7.230 23 H 0.071 0.929 24 H 0.078 0.922 25 H 0.099 0.901 26 H 0.131 0.869 27 H 0.132 0.868 28 H 0.141 0.859 29 H 0.274 0.726 30 H 0.098 0.902 31 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.582 4.598 12.046 14.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.116 5.884 3 C -0.282 4.282 4 C 0.012 3.988 5 Cl -0.028 7.028 6 C -0.195 4.195 7 C -0.065 4.065 8 C -0.227 4.227 9 C 0.161 3.839 10 O -0.184 6.184 11 C 0.118 3.882 12 H 0.069 0.931 13 C -0.562 4.562 14 H 0.113 0.887 15 C -0.120 4.120 16 N -0.501 5.501 17 Si 0.681 3.319 18 H -0.191 1.191 19 H -0.200 1.200 20 H -0.180 1.180 21 C -0.102 4.102 22 Cl -0.205 7.205 23 H 0.090 0.910 24 H 0.097 0.903 25 H 0.117 0.883 26 H 0.149 0.851 27 H 0.149 0.851 28 H 0.159 0.841 29 H 0.085 0.915 30 H 0.116 0.884 31 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -4.940 3.420 11.999 13.420 hybrid contribution -0.579 2.356 -0.191 2.434 sum -5.519 5.777 11.808 14.257 Atomic orbital electron populations 1.23537 0.96165 1.05857 1.04891 1.85257 1.05351 1.00624 1.97153 1.20642 1.17050 0.99020 0.91464 1.20874 0.99526 0.92284 0.86102 1.98349 1.95563 1.78381 1.30515 1.20773 1.07467 0.92298 0.99011 1.20964 0.94854 0.99594 0.91115 1.21564 1.06918 0.94248 0.99963 1.18948 0.88060 0.89785 0.87078 1.86431 1.81422 1.39101 1.11461 1.20988 0.91500 0.93793 0.81918 0.93126 1.20706 1.29952 0.96001 1.09505 0.88732 1.24899 0.94194 0.98177 0.94688 1.69832 1.31706 1.36135 1.12473 0.87158 0.80332 0.85529 0.78891 1.19136 1.19991 1.18048 1.26091 0.97279 0.93551 0.93260 1.98671 1.85296 1.70168 1.66325 0.91034 0.90316 0.88281 0.85060 0.85057 0.84123 0.91546 0.88388 0.88482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.90 10.72 101.05 1.08 -0.81 16 2 S -0.12 -1.98 20.70 -107.50 -2.23 -4.21 16 3 C -0.17 -3.02 5.71 -38.94 -0.22 -3.25 16 4 C 0.04 0.66 6.33 -39.33 -0.25 0.41 16 5 Cl -0.06 -0.79 27.83 -51.86 -1.44 -2.23 16 6 C -0.17 -2.43 9.82 -39.55 -0.39 -2.82 16 7 C -0.05 -0.67 10.04 -39.55 -0.40 -1.06 16 8 C -0.21 -3.59 7.26 -39.46 -0.29 -3.88 16 9 C 0.21 4.10 6.08 -39.08 -0.24 3.87 16 10 O -0.27 -5.89 9.04 -19.77 -0.18 -6.07 16 11 C 0.17 3.77 1.69 -27.89 -0.05 3.73 16 12 H 0.05 1.09 2.90 -51.92 -0.15 0.94 16 13 C -0.52 -13.44 9.23 -34.44 -0.32 -13.76 16 14 H 0.09 2.71 8.06 -52.48 -0.42 2.28 16 15 C 0.09 2.24 5.47 -17.82 -0.10 2.15 16 16 N -0.87 -23.88 13.96 55.43 0.77 -23.11 16 17 Si 0.86 18.55 26.38 -169.99 -4.48 14.07 16 18 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 19 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 20 H -0.26 -5.13 5.98 56.52 0.34 -4.79 16 21 C -0.04 -0.75 5.96 37.16 0.22 -0.53 16 22 Cl -0.23 -4.05 25.88 -51.86 -1.34 -5.39 16 23 H 0.07 0.92 8.14 -51.92 -0.42 0.49 16 24 H 0.08 1.16 8.14 -51.92 -0.42 0.74 16 25 H 0.10 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 27 H 0.13 1.46 8.06 -52.48 -0.42 1.04 16 28 H 0.14 2.51 5.07 -52.49 -0.27 2.25 16 29 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 30 H 0.10 1.85 6.92 -51.92 -0.36 1.49 16 31 H 0.10 1.81 8.14 -51.93 -0.42 1.39 16 LS Contribution 302.25 15.07 4.55 4.55 Total: -1.00 -26.74 302.25 -8.22 -34.96 By element: Atomic # 1 Polarization: 6.32 SS G_CDS: -2.93 Total: 3.38 kcal Atomic # 6 Polarization: -15.02 SS G_CDS: -0.94 Total: -15.96 kcal Atomic # 7 Polarization: -23.88 SS G_CDS: 0.77 Total: -23.11 kcal Atomic # 8 Polarization: -5.89 SS G_CDS: -0.18 Total: -6.07 kcal Atomic # 14 Polarization: 18.55 SS G_CDS: -4.48 Total: 14.07 kcal Atomic # 16 Polarization: -1.98 SS G_CDS: -2.23 Total: -4.21 kcal Atomic # 17 Polarization: -4.83 SS G_CDS: -2.79 Total: -7.62 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -26.74 -8.22 -34.96 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234246712.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.030 kcal (2) G-P(sol) polarization free energy of solvation -26.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.964 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds