Wall clock time and date at job start Tue Mar 31 2020 08:54:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52997 * 109.47164 * 2 1 4 4 N 1.46496 * 109.46995 * 239.99963 * 2 1 3 5 5 N 1.40298 * 126.09413 * 60.02978 * 4 2 1 6 6 C 1.31070 * 108.27079 * 179.90638 * 5 4 2 7 7 C 1.39291 * 108.07769 * 0.02562 * 6 5 4 8 8 C 1.34329 * 126.08806 * 239.71361 * 4 2 1 9 9 C 1.50823 * 128.03392 * 0.83571 * 8 4 2 10 10 H 1.08997 * 109.51448 * 282.63282 * 9 8 4 11 11 N 1.46899 * 109.82499 * 43.13555 * 9 8 4 12 12 C 1.46897 * 111.00141 * 204.08064 * 11 9 8 13 13 C 1.52997 * 109.47218 * 179.97438 * 12 11 9 14 14 H 1.09000 * 109.46590 * 55.00601 * 13 12 11 15 15 C 1.52995 * 109.47551 * 295.00341 * 13 12 11 16 16 C 1.53004 * 109.47232 * 174.99818 * 13 12 11 17 17 C 1.50699 * 109.47243 * 185.00126 * 16 13 12 18 18 H 1.07999 * 119.99948 * 0.02562 * 17 16 13 19 19 C 1.37881 * 119.99998 * 179.97438 * 17 16 13 20 20 N 1.31518 * 119.99752 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00209 * 180.02562 * 19 17 16 22 22 H 1.48508 * 109.46852 * 0.02562 * 21 19 17 23 23 H 1.48492 * 109.47290 * 120.00269 * 21 19 17 24 24 H 1.48498 * 109.47045 * 240.00635 * 21 19 17 25 25 C 1.53365 * 108.43923 * 162.97559 * 9 8 4 26 26 C 1.53108 * 109.50661 * 49.72871 * 25 9 8 27 27 C 1.50843 * 127.89507 * 180.10225 * 7 6 5 28 28 H 1.09001 * 109.47002 * 59.99738 * 1 2 3 29 29 H 1.08993 * 109.46955 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47050 * 300.00004 * 1 2 3 31 31 H 1.09001 * 109.46998 * 119.99705 * 2 1 3 32 32 H 1.09001 * 109.47230 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47375 * 300.00034 * 3 2 1 34 34 H 1.09000 * 109.47140 * 60.00051 * 3 2 1 35 35 H 1.07994 * 125.95773 * 180.02562 * 6 5 4 36 36 H 1.00900 * 110.99831 * 80.12942 * 11 9 8 37 37 H 1.08999 * 109.47405 * 300.00481 * 12 11 9 38 38 H 1.09004 * 109.46913 * 59.99681 * 12 11 9 39 39 H 1.09000 * 109.47386 * 299.99773 * 15 13 12 40 40 H 1.09000 * 109.47328 * 59.99946 * 15 13 12 41 41 H 1.09002 * 109.47235 * 180.02562 * 15 13 12 42 42 H 1.09003 * 109.47370 * 305.00697 * 16 13 12 43 43 H 1.09004 * 109.46583 * 65.00028 * 16 13 12 44 44 H 0.96998 * 120.00171 * 179.97438 * 20 19 17 45 45 H 1.08991 * 109.46831 * 289.71515 * 25 9 8 46 46 H 1.09001 * 109.46378 * 169.73778 * 25 9 8 47 47 H 1.09005 * 109.46810 * 169.70243 * 26 25 9 48 48 H 1.09004 * 109.46216 * 49.72869 * 26 25 9 49 49 H 1.08994 * 109.68470 * 283.13414 * 27 7 6 50 50 H 1.09003 * 109.68481 * 43.69909 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 7 1.7599 -0.3241 -2.5255 6 6 2.3664 -1.1787 -3.3127 7 6 3.0251 -2.1102 -2.5136 8 6 2.7982 -1.7841 -1.2155 9 6 3.3364 -2.5626 -0.0411 10 1 4.1796 -2.0271 0.3951 11 7 2.2829 -2.7331 0.9685 12 6 2.8612 -2.9508 2.3012 13 6 1.7360 -3.1229 3.3234 14 1 1.0723 -3.9253 3.0014 15 6 0.9435 -1.8190 3.4342 16 6 2.3350 -3.4731 4.6871 17 6 1.2247 -3.7630 5.6640 18 1 0.1949 -3.7038 5.3441 19 6 1.5237 -4.1048 6.9659 20 7 2.7778 -4.1773 7.3552 21 14 0.1476 -4.4648 8.1766 22 1 -1.1632 -4.3158 7.4947 23 1 0.2858 -5.8533 8.6846 24 1 0.2261 -3.5119 9.3128 25 6 3.7998 -3.9364 -0.5411 26 6 4.7023 -3.7573 -1.7648 27 6 3.8607 -3.2852 -2.9570 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.1301 1.4425 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 2.3570 -1.1633 -4.3925 36 1 1.6599 -3.4859 0.7173 37 1 3.4799 -3.8480 2.2867 38 1 3.4734 -2.0918 2.5763 39 1 1.6072 -1.0166 3.7563 40 1 0.5167 -1.5695 2.4627 41 1 0.1421 -1.9415 4.1628 42 1 2.9718 -4.3524 4.5893 43 1 2.9281 -2.6336 5.0497 44 1 2.9882 -4.4174 8.2712 45 1 2.9312 -4.5353 -0.8148 46 1 4.3551 -4.4421 0.2489 47 1 5.1764 -4.7080 -2.0088 48 1 5.4695 -3.0149 -1.5448 49 1 3.2099 -4.0935 -3.2904 50 1 4.5175 -2.9818 -3.7723 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001336743116.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:54:27 Heat of formation + Delta-G solvation = 42.267851 kcal Electronic energy + Delta-G solvation = -26259.254423 eV Core-core repulsion = 22900.519561 eV Total energy + Delta-G solvation = -3358.734862 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.53136 -37.78920 -36.31282 -35.19894 -33.52976 -32.07741 -30.44062 -29.28330 -28.04204 -27.27171 -26.75611 -25.13833 -23.09685 -22.87911 -22.09227 -21.95332 -19.61731 -19.37735 -18.60519 -16.80386 -16.36210 -15.59013 -15.05721 -14.69967 -14.62225 -14.48309 -14.28735 -14.06602 -13.85826 -13.72755 -13.29812 -13.03770 -12.81064 -12.48987 -12.30491 -12.27649 -12.10370 -11.89189 -11.73478 -11.52900 -11.36542 -11.27072 -11.08902 -10.99881 -10.87918 -10.82982 -10.65949 -10.35442 -10.32067 -10.27254 -9.77660 -9.23514 -9.14117 -8.99734 -8.37148 -8.28944 -8.11724 -6.01739 -4.02923 1.99218 2.62751 2.85386 3.29228 3.37262 3.40868 4.19150 4.45323 4.50709 4.59034 4.72087 4.87588 4.99393 5.00716 5.06656 5.25645 5.30199 5.34429 5.36302 5.50023 5.55340 5.56700 5.62050 5.65254 5.74270 5.75494 5.78689 5.78969 5.87659 5.96603 6.04724 6.05219 6.16554 6.18470 6.24981 6.26441 6.34248 6.45257 6.57653 6.80027 6.89692 7.07611 7.09804 7.19595 7.23716 7.46475 7.64482 7.79049 7.89016 7.98100 8.41729 9.03656 9.60916 11.09735 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.018492 B = 0.003440 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.790058 B = 8138.552902 C = 9186.735469 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.151 3.849 3 C -0.162 4.162 4 N -0.334 5.334 5 N -0.305 5.305 6 C 0.043 3.957 7 C -0.253 4.253 8 C 0.106 3.894 9 C 0.147 3.853 10 H 0.092 0.908 11 N -0.684 5.684 12 C 0.062 3.938 13 C -0.082 4.082 14 H 0.054 0.946 15 C -0.125 4.125 16 C 0.028 3.972 17 C -0.512 4.512 18 H 0.056 0.944 19 C 0.056 3.944 20 N -0.896 5.896 21 Si 0.889 3.111 22 H -0.273 1.273 23 H -0.285 1.285 24 H -0.285 1.285 25 C -0.140 4.140 26 C -0.115 4.115 27 C -0.036 4.036 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.072 0.928 31 H 0.131 0.869 32 H 0.055 0.945 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.175 0.825 36 H 0.344 0.656 37 H 0.031 0.969 38 H 0.067 0.933 39 H 0.039 0.961 40 H 0.041 0.959 41 H 0.055 0.945 42 H 0.013 0.987 43 H 0.016 0.984 44 H 0.259 0.741 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.065 0.935 48 H 0.063 0.937 49 H 0.064 0.936 50 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.009 5.042 -19.739 20.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.050 3.950 3 C -0.220 4.220 4 N -0.115 5.115 5 N -0.126 5.126 6 C -0.141 4.141 7 C -0.265 4.265 8 C -0.025 4.025 9 C 0.035 3.965 10 H 0.110 0.890 11 N -0.314 5.314 12 C -0.066 4.066 13 C -0.101 4.101 14 H 0.073 0.927 15 C -0.183 4.183 16 C -0.010 4.010 17 C -0.551 4.551 18 H 0.075 0.925 19 C -0.145 4.145 20 N -0.536 5.536 21 Si 0.717 3.283 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.211 1.211 25 C -0.180 4.180 26 C -0.153 4.153 27 C -0.074 4.074 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.148 0.852 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.092 0.908 35 H 0.192 0.808 36 H 0.163 0.837 37 H 0.049 0.951 38 H 0.085 0.915 39 H 0.059 0.941 40 H 0.060 0.940 41 H 0.074 0.926 42 H 0.031 0.969 43 H 0.034 0.966 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.091 0.909 47 H 0.084 0.916 48 H 0.082 0.918 49 H 0.082 0.918 50 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.200 6.837 -19.277 20.489 hybrid contribution 0.150 -1.825 0.622 1.934 sum 1.350 5.013 -18.655 19.363 Atomic orbital electron populations 1.22027 0.93653 1.02944 1.02435 1.21612 0.95559 0.93125 0.84752 1.22154 1.01404 0.95436 1.02960 1.48491 1.37071 1.20745 1.05162 1.77410 1.24384 1.23984 0.86833 1.23417 0.97378 0.93713 0.99585 1.19841 1.11433 1.03681 0.91562 1.20853 0.95536 0.90169 0.95939 1.20232 0.93683 0.93993 0.88551 0.88991 1.60627 1.18058 1.50637 1.02060 1.22236 0.97614 0.99681 0.87036 1.21197 0.95270 0.97382 0.96211 0.92744 1.21637 0.99996 0.96834 0.99792 1.19116 0.96022 0.96463 0.89368 1.21257 0.93061 1.45924 0.94840 0.92543 1.25016 0.95301 0.95727 0.98476 1.69970 1.17084 1.49014 1.17538 0.86587 0.82540 0.77868 0.81329 1.19753 1.21107 1.21074 1.22253 1.00526 0.96786 0.98404 1.21549 0.97890 1.01242 0.94661 1.19922 0.96208 0.94171 0.97116 0.92171 0.91848 0.90949 0.85174 0.92564 0.91736 0.90773 0.80841 0.83693 0.95106 0.91460 0.94142 0.93968 0.92630 0.96910 0.96576 0.93134 0.91251 0.90903 0.91610 0.91811 0.91767 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.46 37.16 0.35 -1.43 16 2 C 0.15 1.84 3.44 -67.93 -0.23 1.61 16 3 C -0.16 -1.78 9.45 37.16 0.35 -1.43 16 4 N -0.33 -4.46 3.26 -50.69 -0.17 -4.63 16 5 N -0.30 -4.28 12.45 30.54 0.38 -3.90 16 6 C 0.04 0.53 12.00 -17.49 -0.21 0.32 16 7 C -0.25 -3.01 5.91 -105.05 -0.62 -3.63 16 8 C 0.11 1.35 6.42 -82.33 -0.53 0.82 16 9 C 0.15 1.72 2.52 -68.62 -0.17 1.55 16 10 H 0.09 1.11 7.82 -51.93 -0.41 0.70 16 11 N -0.68 -8.67 3.75 -107.69 -0.40 -9.07 16 12 C 0.06 0.95 4.88 -3.83 -0.02 0.93 16 13 C -0.08 -1.53 2.48 -90.62 -0.22 -1.75 16 14 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 15 C -0.13 -2.21 8.89 37.15 0.33 -1.88 16 16 C 0.03 0.68 4.45 -27.88 -0.12 0.55 16 17 C -0.51 -13.91 8.41 -34.44 -0.29 -14.20 16 18 H 0.06 1.50 7.06 -52.49 -0.37 1.13 16 19 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 20 N -0.90 -26.42 13.29 55.43 0.74 -25.69 16 21 Si 0.89 21.33 29.54 -169.99 -5.02 16.31 16 22 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 24 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 25 C -0.14 -1.43 5.20 -26.49 -0.14 -1.57 16 26 C -0.12 -1.04 5.90 -26.48 -0.16 -1.20 16 27 C -0.04 -0.33 6.28 -27.62 -0.17 -0.51 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.13 1.69 5.82 -51.93 -0.30 1.39 16 32 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.17 1.58 8.06 -52.49 -0.42 1.16 16 36 H 0.34 4.39 8.35 -39.29 -0.33 4.06 16 37 H 0.03 0.48 7.69 -51.93 -0.40 0.08 16 38 H 0.07 1.04 8.06 -51.93 -0.42 0.62 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.28 16 40 H 0.04 0.64 7.53 -51.93 -0.39 0.25 16 41 H 0.05 1.08 6.95 -51.93 -0.36 0.72 16 42 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 44 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 45 H 0.07 0.72 7.91 -51.93 -0.41 0.31 16 46 H 0.07 0.75 7.77 -51.93 -0.40 0.35 16 47 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.59 8.11 -51.93 -0.42 0.17 16 49 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 390.04 15.07 5.88 5.88 Total: -1.00 -29.64 390.04 -9.82 -39.45 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -9.27 Total: 2.00 kcal Atomic # 6 Polarization: -18.40 SS G_CDS: -1.95 Total: -20.35 kcal Atomic # 7 Polarization: -43.83 SS G_CDS: 0.55 Total: -43.29 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.64 -9.82 -39.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001336743116.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.723 kcal (2) G-P(sol) polarization free energy of solvation -29.638 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds