Wall clock time and date at job start Tue Mar 31 2020 09:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34736 * 116.99399 * 2 1 4 4 O 1.21494 * 120.00837 * 359.97438 * 3 2 1 5 5 C 1.47563 * 119.99876 * 180.27372 * 3 2 1 6 6 N 1.30656 * 122.11144 * 355.18140 * 5 3 2 7 7 S 1.56147 * 109.79515 * 180.02562 * 6 5 3 8 8 C 1.71764 * 97.28105 * 0.02562 * 7 6 5 9 9 C 1.34974 * 105.46589 * 359.73752 * 8 7 6 10 10 S 1.76197 * 124.16035 * 180.21570 * 9 8 7 11 11 O 1.42101 * 106.40033 * 127.22537 * 10 9 8 12 12 O 1.42101 * 106.40535 * 260.14995 * 10 9 8 13 13 N 1.65599 * 107.21787 * 13.68910 * 10 9 8 14 14 C 1.46501 * 120.00114 * 94.73335 * 13 10 9 15 15 C 1.36940 * 120.00103 * 274.74548 * 13 10 9 16 16 H 1.07999 * 119.99719 * 6.18829 * 15 13 10 17 17 C 1.38805 * 120.00081 * 186.20246 * 15 13 10 18 18 N 1.31627 * 120.00009 * 6.23313 * 17 15 13 19 19 Si 1.86803 * 120.00014 * 186.23551 * 17 15 13 20 20 H 1.48495 * 109.47005 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.46930 * 120.00061 * 19 17 15 22 22 H 1.48496 * 109.46963 * 239.99737 * 19 17 15 23 23 H 1.09005 * 109.46670 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47889 * 300.00070 * 1 2 3 25 25 H 1.08994 * 109.47134 * 60.00603 * 1 2 3 26 26 H 1.08006 * 127.26484 * 180.02562 * 8 7 6 27 27 H 1.09003 * 109.47214 * 354.43817 * 14 13 10 28 28 H 1.09006 * 109.46683 * 114.42965 * 14 13 10 29 29 H 1.08994 * 109.47697 * 234.42895 * 14 13 10 30 30 H 0.97005 * 119.99498 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0636 1.2006 0.0000 4 8 1.4019 2.2195 -0.0005 5 6 3.5371 1.2779 -0.0061 6 7 4.2889 0.2129 0.0813 7 16 5.7948 0.6244 0.0485 8 6 5.5543 2.3195 -0.0894 9 6 4.2159 2.4927 -0.1100 10 16 3.4230 4.0603 -0.2459 11 8 2.5108 3.9559 -1.3305 12 8 3.0282 4.4257 1.0693 13 7 4.5765 5.1545 -0.7088 14 6 4.7531 5.4771 -2.1269 15 6 5.3655 5.7578 0.2340 16 1 5.3053 5.4481 1.2668 17 6 6.2424 6.7675 -0.1379 18 7 6.2292 7.2300 -1.3702 19 14 7.4414 7.4700 1.1105 20 1 7.2562 6.7846 2.4147 21 1 8.8320 7.2603 0.6336 22 1 7.1887 8.9240 1.2757 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3635 0.5138 0.8899 25 1 -0.3633 0.5137 -0.8900 26 1 6.3138 3.0849 -0.1517 27 1 4.1119 4.8329 -2.7286 28 1 4.4846 6.5195 -2.2986 29 1 5.7941 5.3189 -2.4087 30 1 6.8417 7.9358 -1.6298 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337815005.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:17:38 Heat of formation + Delta-G solvation = -81.769788 kcal Electronic energy + Delta-G solvation = -21629.204292 eV Core-core repulsion = 18066.403441 eV Total energy + Delta-G solvation = -3562.800850 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 306.022 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.63896 -38.75742 -36.43166 -35.88643 -35.73842 -34.50991 -31.72073 -31.27907 -28.43379 -26.50531 -26.22628 -23.46802 -22.52311 -20.52900 -18.95287 -18.26945 -18.08676 -16.98852 -16.77120 -16.44784 -16.26981 -15.31019 -14.86559 -14.46348 -14.21415 -14.00689 -13.39347 -13.25811 -13.03717 -12.72776 -12.22834 -11.98547 -11.65920 -11.29819 -11.13196 -11.08576 -11.04721 -10.87973 -10.74107 -10.63265 -10.56980 -10.27392 -10.15588 -10.04908 -9.90104 -9.32548 -8.93531 -8.31001 -6.34941 -3.95931 0.53970 1.21577 1.38337 1.64044 1.83123 2.70596 2.95592 3.09742 3.18344 3.22262 3.98780 4.34055 4.61131 4.78102 4.90607 5.10414 5.13318 5.22480 5.49751 5.52596 5.71023 5.86573 6.10302 6.26175 6.34793 6.95062 7.09263 7.31449 7.64699 7.71153 8.28740 8.72972 9.12320 10.55542 Molecular weight = 306.02amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.005925 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.692788 B = 4724.841958 C = 5427.663872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.338 6.338 3 C 0.531 3.469 4 O -0.466 6.466 5 C 0.130 3.870 6 N -0.505 5.505 7 S 0.469 5.531 8 C -0.168 4.168 9 C -0.672 4.672 10 S 2.629 3.371 11 O -0.964 6.964 12 O -0.958 6.958 13 N -0.829 5.829 14 C 0.121 3.879 15 C -0.288 4.288 16 H 0.112 0.888 17 C 0.037 3.963 18 N -0.861 5.861 19 Si 0.922 3.078 20 H -0.266 1.266 21 H -0.279 1.279 22 H -0.278 1.278 23 H 0.103 0.897 24 H 0.067 0.933 25 H 0.068 0.932 26 H 0.208 0.792 27 H 0.034 0.966 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.679 -11.135 0.465 11.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 O -0.254 6.254 3 C 0.368 3.632 4 O -0.350 6.350 5 C -0.043 4.043 6 N -0.340 5.340 7 S 0.624 5.376 8 C -0.316 4.316 9 C -0.760 4.760 10 S 2.711 3.289 11 O -0.953 6.953 12 O -0.948 6.948 13 N -0.661 5.661 14 C -0.025 4.025 15 C -0.426 4.426 16 H 0.129 0.871 17 C -0.170 4.170 18 N -0.503 5.503 19 Si 0.748 3.252 20 H -0.190 1.190 21 H -0.205 1.205 22 H -0.204 1.204 23 H 0.122 0.878 24 H 0.085 0.915 25 H 0.087 0.913 26 H 0.225 0.775 27 H 0.053 0.947 28 H 0.104 0.896 29 H 0.072 0.928 30 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.472 -12.751 0.657 12.776 hybrid contribution 0.120 1.495 0.329 1.535 sum 0.592 -11.256 0.985 11.315 Atomic orbital electron populations 1.23391 0.75722 1.03788 1.03233 1.86608 1.23547 1.31180 1.84046 1.20101 0.86783 0.82336 0.73974 1.90990 1.65145 1.35383 1.43469 1.19436 0.92077 0.87055 1.05778 1.72292 1.07119 1.32304 1.22258 1.80340 1.04874 0.97119 1.55234 1.27307 0.98916 1.05965 0.99449 1.32982 1.04455 1.25002 1.13589 1.06592 0.76358 0.72044 0.73898 1.93437 1.60884 1.86225 1.54726 1.93435 1.81401 1.81183 1.38746 1.53991 1.56580 1.42574 1.12989 1.21550 1.00237 1.01446 0.79224 1.19710 1.18476 1.14649 0.89763 0.87057 1.25287 0.97732 0.96928 0.97058 1.70221 1.35922 1.26877 1.17297 0.85936 0.79657 0.79296 0.80360 1.18975 1.20464 1.20354 0.87833 0.91457 0.91283 0.77522 0.94732 0.89560 0.92787 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 34. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.34 -5.69 10.46 -40.59 -0.42 -6.11 16 3 C 0.53 10.77 7.92 34.53 0.27 11.04 16 4 O -0.47 -10.67 12.93 -27.25 -0.35 -11.02 16 5 C 0.13 2.59 6.66 -84.08 -0.56 2.03 16 6 N -0.50 -8.74 11.21 24.87 0.28 -8.46 16 7 S 0.47 6.33 23.20 -107.50 -2.49 3.84 16 8 C -0.17 -2.78 10.97 29.57 0.32 -2.45 16 9 C -0.67 -13.78 5.91 -40.26 -0.24 -14.01 16 10 S 2.63 63.71 4.23 -107.50 -0.45 63.26 16 11 O -0.96 -24.84 14.55 -66.44 -0.97 -25.81 16 12 O -0.96 -25.74 16.94 -58.68 -0.99 -26.73 16 13 N -0.83 -19.85 3.02 -66.69 -0.20 -20.05 16 14 C 0.12 2.75 8.83 59.85 0.53 3.28 16 15 C -0.29 -7.04 9.33 -15.06 -0.14 -7.18 16 16 H 0.11 2.68 7.40 -52.49 -0.39 2.29 16 17 C 0.04 0.89 5.41 -17.43 -0.09 0.79 16 18 N -0.86 -20.96 9.57 55.49 0.53 -20.42 16 19 Si 0.92 18.49 29.56 -169.99 -5.02 13.47 16 20 H -0.27 -5.25 7.11 56.52 0.40 -4.85 16 21 H -0.28 -5.46 7.11 56.52 0.40 -5.05 16 22 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 23 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.21 3.11 7.89 -52.48 -0.41 2.70 16 27 H 0.03 0.73 6.89 -51.93 -0.36 0.37 16 28 H 0.09 2.08 6.85 -51.93 -0.36 1.73 16 29 H 0.05 1.19 7.29 -51.93 -0.38 0.81 16 30 H 0.27 6.15 8.31 -40.82 -0.34 5.81 16 LS Contribution 291.65 15.07 4.40 4.40 Total: -1.00 -32.09 291.65 -6.84 -38.94 By element: Atomic # 1 Polarization: 2.04 SS G_CDS: -2.30 Total: -0.26 kcal Atomic # 6 Polarization: -6.20 SS G_CDS: 1.16 Total: -5.04 kcal Atomic # 7 Polarization: -49.54 SS G_CDS: 0.61 Total: -48.93 kcal Atomic # 8 Polarization: -66.94 SS G_CDS: -2.74 Total: -69.68 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.02 Total: 13.47 kcal Atomic # 16 Polarization: 70.05 SS G_CDS: -2.95 Total: 67.10 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -32.09 -6.84 -38.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337815005.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.832 kcal (2) G-P(sol) polarization free energy of solvation -32.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.938 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds