Wall clock time and date at job start Tue Mar 31 2020 08:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53004 * 109.46883 * 2 1 4 4 C 1.52998 * 109.47316 * 239.99922 * 2 1 3 5 5 C 1.53005 * 109.47178 * 119.99565 * 2 1 3 6 6 N 1.46905 * 109.46902 * 39.33493 * 5 2 1 7 7 C 1.46898 * 110.99812 * 47.53000 * 6 5 2 8 8 C 1.50701 * 109.47338 * 64.63743 * 7 6 5 9 9 H 1.07998 * 119.99758 * 0.02562 * 8 7 6 10 10 C 1.37880 * 120.00191 * 179.97438 * 8 7 6 11 11 N 1.31513 * 119.99548 * 0.02562 * 10 8 7 12 12 Si 1.86794 * 119.99813 * 180.02562 * 10 8 7 13 13 H 1.48504 * 109.47284 * 90.00262 * 12 10 8 14 14 H 1.48502 * 109.46853 * 209.99666 * 12 10 8 15 15 H 1.48497 * 109.47483 * 329.99926 * 12 10 8 16 16 C 1.46898 * 110.99685 * 283.57590 * 6 5 2 17 17 C 1.50692 * 109.47293 * 302.80241 * 16 6 5 18 18 C 1.39876 * 126.03991 * 275.90204 * 17 16 6 19 19 N 1.30844 * 108.19865 * 179.81806 * 18 17 16 20 20 N 1.40082 * 108.20714 * 0.43747 * 19 18 17 21 21 C 1.46502 * 126.03575 * 179.73548 * 20 19 18 22 22 C 1.53783 * 113.61386 * 194.11466 * 21 20 19 23 23 C 1.53958 * 87.01793 * 220.05243 * 22 21 20 24 24 C 1.53778 * 113.61028 * 96.50865 * 21 20 19 25 25 C 1.34942 * 107.92509 * 359.72289 * 20 19 18 26 26 H 1.09004 * 109.47382 * 300.32538 * 1 2 3 27 27 H 1.08998 * 109.47418 * 60.32841 * 1 2 3 28 28 H 1.09000 * 109.47226 * 180.32686 * 1 2 3 29 29 H 1.09000 * 109.47168 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.46831 * 299.99504 * 3 2 1 31 31 H 1.09000 * 109.47274 * 60.00128 * 3 2 1 32 32 H 1.09003 * 109.46788 * 341.13026 * 4 2 1 33 33 H 1.09000 * 109.47473 * 101.13306 * 4 2 1 34 34 H 1.09003 * 109.46946 * 221.13377 * 4 2 1 35 35 H 1.09000 * 109.47423 * 279.33413 * 5 2 1 36 36 H 1.08996 * 109.47094 * 159.33387 * 5 2 1 37 37 H 1.09000 * 109.47551 * 304.63462 * 7 6 5 38 38 H 1.09002 * 109.46691 * 184.63722 * 7 6 5 39 39 H 0.97001 * 119.99149 * 179.97438 * 11 10 8 40 40 H 1.08997 * 109.46983 * 62.80415 * 16 6 5 41 41 H 1.09005 * 109.46913 * 182.80446 * 16 6 5 42 42 H 1.07994 * 125.89964 * 359.97438 * 18 17 16 43 43 H 1.08992 * 112.85013 * 325.31497 * 21 20 19 44 44 H 1.09002 * 113.61341 * 334.57068 * 22 21 20 45 45 H 1.09003 * 113.61216 * 105.47232 * 22 21 20 46 46 H 1.09004 * 113.53510 * 270.81063 * 23 22 21 47 47 H 1.09000 * 113.74037 * 139.94698 * 23 22 21 48 48 H 1.08999 * 113.61968 * 254.52762 * 24 21 20 49 49 H 1.09007 * 113.61865 * 25.43218 * 24 21 20 50 50 H 1.08009 * 126.12979 * 180.02562 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0400 -0.7212 1.2493 6 7 1.1932 -1.8908 1.5195 7 6 0.9782 -2.6784 0.2983 8 6 2.2921 -3.2500 -0.1687 9 1 3.1963 -3.0487 0.3865 10 6 2.3397 -4.0308 -1.3041 11 7 1.2385 -4.2763 -1.9798 12 14 3.9682 -4.7398 -1.8824 13 1 4.1779 -6.0711 -1.2587 14 1 3.9486 -4.8832 -3.3604 15 1 5.0727 -3.8289 -1.4881 16 6 -0.0863 -1.4874 2.1179 17 6 0.1735 -0.7073 3.3807 18 6 0.4069 -1.2488 4.6492 19 7 0.5931 -0.2613 5.4871 20 7 0.4739 0.9417 4.7793 21 6 0.6058 2.2885 5.3404 22 6 0.0909 3.3976 4.4078 23 6 1.3059 4.2291 4.8579 24 6 2.0077 2.8952 5.1628 25 6 0.2164 0.6408 3.4893 26 1 -0.3634 0.5189 0.8871 27 1 -0.3634 0.5087 -0.8929 28 1 -0.3634 -1.0276 0.0059 29 1 3.1299 1.4426 0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8900 32 1 1.2443 -1.3424 -1.6604 33 1 2.3482 0.0137 -1.9928 34 1 2.8909 -1.3490 -0.9843 35 1 2.0040 -0.0420 2.1011 36 1 3.0676 -1.0463 1.0871 37 1 0.5641 -2.0370 -0.4796 38 1 0.2825 -3.4909 0.5078 39 1 1.2720 -4.8253 -2.7788 40 1 -0.6367 -0.8645 1.4128 41 1 -0.6732 -2.3752 2.3535 42 1 0.4318 -2.3003 4.8940 43 1 0.2241 2.3621 6.3587 44 1 0.1142 3.1263 3.3524 45 1 -0.8660 3.8184 4.7167 46 1 1.1149 4.8346 5.7439 47 1 1.7737 4.7944 4.0518 48 1 2.5961 2.9111 6.0802 49 1 2.5561 2.4864 4.3141 50 1 0.0712 1.3491 2.6869 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001342848194.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:45:49 Heat of formation + Delta-G solvation = 147.224800 kcal Electronic energy + Delta-G solvation = -27111.291255 eV Core-core repulsion = 23757.107668 eV Total energy + Delta-G solvation = -3354.183588 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.26913 -39.25370 -38.42238 -33.66447 -32.79681 -31.32113 -30.35291 -27.75842 -27.59234 -26.15131 -26.02940 -25.81258 -24.73183 -23.31527 -21.23528 -20.65516 -19.77732 -19.23453 -18.23204 -17.07765 -16.26532 -15.95523 -15.23907 -14.85303 -14.62254 -14.33498 -14.15422 -13.98911 -13.54350 -13.23955 -13.14088 -12.87846 -12.63428 -12.39263 -12.29181 -11.84420 -11.65220 -11.55652 -11.26319 -11.10274 -11.00182 -10.96918 -10.83185 -10.77209 -10.69671 -10.65462 -10.44873 -10.17148 -9.94892 -9.75447 -9.59482 -9.45955 -9.08778 -9.01989 -8.31093 -8.01371 -6.73643 -5.95158 -3.89598 2.12882 2.67173 3.17701 3.35319 3.42171 3.45249 4.01091 4.18362 4.44985 4.46879 4.49498 4.90723 5.05563 5.23406 5.30313 5.35698 5.36932 5.38823 5.47554 5.50301 5.51343 5.57291 5.62147 5.69075 5.76918 5.91815 5.97879 6.01092 6.10605 6.18181 6.23343 6.28076 6.36376 6.44847 6.52346 6.61515 6.71888 6.84510 6.89770 7.00609 7.02073 7.19232 7.28663 7.43754 7.54455 7.79371 7.91212 8.01816 8.24196 8.40243 8.71946 9.12712 9.68257 11.15095 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.020548 B = 0.004080 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1362.318921 B = 6861.010183 C = 7336.290016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.093 4.093 3 C -0.132 4.132 4 C -0.143 4.143 5 C 0.079 3.921 6 N -0.527 5.527 7 C 0.163 3.837 8 C -0.487 4.487 9 H 0.059 0.941 10 C 0.057 3.943 11 N -0.898 5.898 12 Si 0.886 3.114 13 H -0.282 1.282 14 H -0.289 1.289 15 H -0.275 1.275 16 C 0.081 3.919 17 C -0.203 4.203 18 C 0.063 3.937 19 N -0.309 5.309 20 N -0.369 5.369 21 C 0.141 3.859 22 C -0.146 4.146 23 C -0.137 4.137 24 C -0.148 4.148 25 C 0.048 3.952 26 H 0.047 0.953 27 H 0.040 0.960 28 H 0.091 0.909 29 H 0.050 0.950 30 H 0.045 0.955 31 H 0.039 0.961 32 H 0.075 0.925 33 H 0.016 0.984 34 H 0.087 0.913 35 H 0.051 0.949 36 H 0.067 0.933 37 H 0.034 0.966 38 H 0.021 0.979 39 H 0.259 0.741 40 H 0.073 0.927 41 H 0.067 0.933 42 H 0.180 0.820 43 H 0.116 0.884 44 H 0.092 0.908 45 H 0.080 0.920 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.077 0.923 49 H 0.090 0.910 50 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.931 16.442 10.152 19.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.095 4.095 3 C -0.190 4.190 4 C -0.199 4.199 5 C -0.050 4.050 6 N -0.250 5.250 7 C 0.039 3.961 8 C -0.525 4.525 9 H 0.077 0.923 10 C -0.144 4.144 11 N -0.538 5.538 12 Si 0.714 3.286 13 H -0.209 1.209 14 H -0.215 1.215 15 H -0.200 1.200 16 C -0.047 4.047 17 C -0.214 4.214 18 C -0.123 4.123 19 N -0.129 5.129 20 N -0.152 5.152 21 C 0.038 3.962 22 C -0.185 4.185 23 C -0.175 4.175 24 C -0.187 4.187 25 C -0.098 4.098 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.109 0.891 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.058 0.942 32 H 0.094 0.906 33 H 0.035 0.965 34 H 0.106 0.894 35 H 0.070 0.930 36 H 0.086 0.914 37 H 0.051 0.949 38 H 0.040 0.960 39 H 0.068 0.932 40 H 0.091 0.909 41 H 0.085 0.915 42 H 0.197 0.803 43 H 0.134 0.866 44 H 0.111 0.889 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.097 0.903 48 H 0.095 0.905 49 H 0.108 0.892 50 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.496 16.465 11.610 20.300 hybrid contribution 0.374 -0.232 -1.820 1.873 sum -2.123 16.233 9.789 19.075 Atomic orbital electron populations 1.22826 0.96404 1.03321 0.99387 1.21154 0.94761 0.94567 0.99020 1.21874 1.00640 0.96515 0.99990 1.22430 1.04582 0.98478 0.94434 1.22152 0.98035 0.91082 0.93722 1.62344 1.12707 1.19191 1.30713 1.20429 0.97522 0.92419 0.85748 1.21032 0.94067 1.29215 1.08229 0.92288 1.24861 0.95980 0.96698 0.96859 1.69933 1.26596 1.39235 1.18062 0.86685 0.84576 0.79664 0.77634 1.20859 1.21511 1.19990 1.21412 0.93661 0.98025 0.91651 1.20163 1.12583 0.92018 0.96656 1.23793 0.98394 0.98714 0.91371 1.77272 1.25140 0.89567 1.20933 1.48491 1.55598 1.05156 1.05932 1.22815 0.97976 0.76493 0.98888 1.23434 0.99354 0.95248 1.00456 1.22729 0.96533 0.96188 1.02087 1.23443 0.96261 0.95754 1.03246 1.22150 1.03110 0.96943 0.87583 0.93468 0.94095 0.89057 0.93133 0.93547 0.94199 0.90617 0.96462 0.89440 0.93037 0.91422 0.94913 0.96047 0.93157 0.90928 0.91508 0.80349 0.86578 0.88913 0.90101 0.89543 0.90258 0.90471 0.89178 0.81940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.68 6.13 37.16 0.23 -2.46 16 2 C -0.09 -1.62 0.77 -154.51 -0.12 -1.73 16 3 C -0.13 -1.91 8.12 37.16 0.30 -1.61 16 4 C -0.14 -2.91 7.45 37.16 0.28 -2.63 16 5 C 0.08 1.49 4.60 -3.82 -0.02 1.47 16 6 N -0.53 -10.79 4.77 -237.52 -1.13 -11.92 16 7 C 0.16 3.91 3.70 -4.98 -0.02 3.89 16 8 C -0.49 -12.78 5.43 -34.44 -0.19 -12.96 16 9 H 0.06 1.59 7.04 -52.49 -0.37 1.22 16 10 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 11 N -0.90 -25.37 13.29 55.43 0.74 -24.63 16 12 Si 0.89 21.24 29.54 -169.99 -5.02 16.22 16 13 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 15 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 16 C 0.08 1.41 4.81 -4.98 -0.02 1.39 16 17 C -0.20 -3.24 4.54 -105.05 -0.48 -3.72 16 18 C 0.06 1.02 11.96 -17.36 -0.21 0.82 16 19 N -0.31 -4.97 12.58 30.63 0.39 -4.59 16 20 N -0.37 -5.06 3.81 -54.07 -0.21 -5.27 16 21 C 0.14 1.41 5.02 -67.12 -0.34 1.07 16 22 C -0.15 -1.12 7.46 -25.82 -0.19 -1.31 16 23 C -0.14 -0.90 8.09 -25.83 -0.21 -1.11 16 24 C -0.15 -1.32 7.88 -25.92 -0.20 -1.53 16 25 C 0.05 0.66 8.75 -17.22 -0.15 0.51 16 26 H 0.05 0.68 5.10 -51.93 -0.26 0.41 16 27 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.72 3.44 -51.93 -0.18 1.54 16 29 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 30 H 0.05 0.63 8.13 -51.93 -0.42 0.21 16 31 H 0.04 0.50 8.13 -51.93 -0.42 0.08 16 32 H 0.08 1.75 5.72 -51.93 -0.30 1.46 16 33 H 0.02 0.31 7.69 -51.93 -0.40 -0.09 16 34 H 0.09 1.99 5.08 -51.93 -0.26 1.73 16 35 H 0.05 0.91 5.26 -51.93 -0.27 0.64 16 36 H 0.07 1.42 6.62 -51.93 -0.34 1.08 16 37 H 0.03 0.80 2.39 -51.93 -0.12 0.68 16 38 H 0.02 0.57 8.08 -51.93 -0.42 0.15 16 39 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 40 H 0.07 1.22 3.04 -54.96 -0.17 1.05 16 41 H 0.07 1.20 8.12 -51.93 -0.42 0.78 16 42 H 0.18 2.62 8.06 -52.49 -0.42 2.20 16 43 H 0.12 1.07 8.14 -51.93 -0.42 0.65 16 44 H 0.09 0.75 6.32 -51.93 -0.33 0.43 16 45 H 0.08 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 50 H 0.16 1.98 5.53 -52.48 -0.29 1.69 16 LS Contribution 362.65 15.07 5.47 5.47 Total: -1.00 -29.02 362.65 -9.13 -38.15 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -7.92 Total: 5.04 kcal Atomic # 6 Polarization: -17.04 SS G_CDS: -1.43 Total: -18.47 kcal Atomic # 7 Polarization: -46.19 SS G_CDS: -0.22 Total: -46.41 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -29.02 -9.13 -38.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001342848194.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 185.377 kcal (2) G-P(sol) polarization free energy of solvation -29.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 156.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 147.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds