Wall clock time and date at job start Tue Mar 31 2020 09:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48492 * 109.47393 * 269.99948 * 3 2 1 5 5 H 1.48499 * 109.47138 * 30.00169 * 3 2 1 6 6 H 1.48506 * 109.47011 * 149.99852 * 3 2 1 7 7 C 1.39946 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00020 * 161.48079 * 7 2 1 9 9 C 1.41396 * 119.99798 * 341.48674 * 7 2 1 10 10 C 1.40714 * 120.24654 * 335.88232 * 9 7 2 11 11 C 1.37617 * 119.74228 * 179.78990 * 10 9 7 12 12 C 1.38638 * 120.25160 * 0.48806 * 11 10 9 13 13 C 1.50697 * 119.74978 * 179.76375 * 12 11 10 14 14 N 1.46502 * 109.47187 * 269.97891 * 13 12 11 15 15 C 1.36995 * 126.40526 * 99.70976 * 14 13 12 16 16 C 1.34631 * 106.83303 * 179.90072 * 15 14 13 17 17 N 1.34180 * 108.03815 * 0.36805 * 16 15 14 18 18 C 1.30583 * 109.26024 * 359.77039 * 17 16 15 19 19 Br 1.89101 * 125.66042 * 180.02562 * 18 17 16 20 20 C 1.38638 * 120.49817 * 359.74126 * 12 11 10 21 21 C 1.37617 * 120.24886 * 0.02562 * 20 12 11 22 22 H 0.96994 * 119.99932 * 359.97438 * 1 2 3 23 23 H 1.07992 * 120.12648 * 0.02562 * 10 9 7 24 24 H 1.08004 * 119.87711 * 180.23011 * 11 10 9 25 25 H 1.09001 * 109.47224 * 29.97846 * 13 12 11 26 26 H 1.08996 * 109.47126 * 149.98242 * 13 12 11 27 27 H 1.07996 * 126.58551 * 0.02562 * 15 14 13 28 28 H 1.07992 * 125.98197 * 180.11135 * 16 15 14 29 29 H 1.07996 * 119.87031 * 179.97438 * 20 12 11 30 30 H 1.08002 * 120.12491 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0081 -1.2119 0.0005 8 1 3.0461 -1.2363 -0.2965 9 6 1.3560 -2.4046 0.3899 10 6 0.2297 -2.3542 1.2319 11 6 -0.3996 -3.5211 1.6009 12 6 0.0781 -4.7436 1.1545 13 6 -0.6166 -6.0148 1.5698 14 7 -0.0226 -6.5121 2.8133 15 6 -0.5280 -6.3523 4.0766 16 6 0.3268 -6.9630 4.9186 17 7 1.3315 -7.4751 4.1915 18 6 1.1291 -7.2088 2.9292 19 35 2.2598 -7.7152 1.5006 20 6 1.1898 -4.8055 0.3285 21 6 1.8321 -3.6511 -0.0571 22 1 -0.4850 0.8400 0.0004 23 1 -0.1417 -1.4033 1.5841 24 1 -1.2665 -3.4847 2.2441 25 1 -1.6763 -5.8147 1.7280 26 1 -0.5012 -6.7644 0.7870 27 1 -1.4384 -5.8372 4.3452 28 1 0.2241 -7.0258 5.9917 29 1 1.5536 -5.7633 -0.0130 30 1 2.6982 -3.7016 -0.7003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001473090321.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:13 Heat of formation + Delta-G solvation = 78.353020 kcal Electronic energy + Delta-G solvation = -16508.432295 eV Core-core repulsion = 13736.492642 eV Total energy + Delta-G solvation = -2771.939653 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 306.006 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -41.78157 -37.78800 -34.65111 -33.22991 -31.68829 -30.26047 -29.41917 -28.43964 -26.99601 -24.10478 -21.55588 -20.86725 -20.79503 -19.87193 -17.47455 -17.01793 -15.74066 -15.31610 -14.41508 -14.19643 -13.85289 -13.74279 -13.63009 -13.10426 -12.70754 -12.19711 -11.97212 -11.74538 -11.26184 -11.17072 -10.98096 -10.72962 -10.62812 -10.43307 -9.92064 -9.85919 -9.48680 -9.26795 -9.23855 -8.19658 -7.63609 -7.52231 -6.93983 -4.52285 1.29878 2.14100 2.48680 2.94382 2.95503 2.98817 3.05209 3.22996 3.44019 3.81220 4.46352 4.99030 5.02713 5.47446 5.48941 5.64655 5.76041 5.79817 6.14674 6.21311 6.39303 6.79938 6.83459 6.91504 7.10966 7.16116 7.20164 7.44850 7.66730 7.89419 7.90811 8.08330 8.13179 8.47338 8.72683 8.80405 9.99866 Molecular weight = 306.01amu Principal moments of inertia in cm(-1) A = 0.024644 B = 0.004511 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.890408 B = 6206.205584 C = 6766.882824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.076 3.924 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.274 1.274 6 H -0.259 1.259 7 C -0.454 4.454 8 H 0.081 0.919 9 C 0.120 3.880 10 C -0.171 4.171 11 C -0.076 4.076 12 C -0.260 4.260 13 C 0.158 3.842 14 N -0.418 5.418 15 C -0.032 4.032 16 C -0.035 4.035 17 N -0.468 5.468 18 C 0.196 3.804 19 Br 0.052 6.948 20 C -0.064 4.064 21 C -0.229 4.229 22 H 0.283 0.717 23 H 0.118 0.882 24 H 0.085 0.915 25 H 0.090 0.910 26 H 0.085 0.915 27 H 0.177 0.823 28 H 0.173 0.827 29 H 0.094 0.906 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.529 -9.886 3.133 10.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.143 4.143 3 Si 0.733 3.267 4 H -0.193 1.193 5 H -0.199 1.199 6 H -0.183 1.183 7 C -0.483 4.483 8 H 0.099 0.901 9 C 0.117 3.883 10 C -0.190 4.190 11 C -0.095 4.095 12 C -0.262 4.262 13 C 0.039 3.961 14 N -0.100 5.100 15 C -0.169 4.169 16 C -0.186 4.186 17 N -0.189 5.189 18 C -0.144 4.144 19 Br 0.133 6.867 20 C -0.082 4.082 21 C -0.248 4.248 22 H 0.094 0.906 23 H 0.136 0.864 24 H 0.104 0.896 25 H 0.108 0.892 26 H 0.104 0.896 27 H 0.194 0.806 28 H 0.190 0.810 29 H 0.112 0.888 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -0.739 -10.302 2.737 10.685 hybrid contribution -0.673 1.495 -0.030 1.640 sum -1.412 -8.806 2.706 9.320 Atomic orbital electron populations 1.69821 1.07728 1.29614 1.33714 1.25978 0.94751 1.01602 0.91974 0.86294 0.80772 0.80261 0.79410 1.19296 1.19924 1.18268 1.19693 0.98507 0.91357 1.38738 0.90132 1.17691 0.90678 0.92103 0.87821 1.21259 0.99592 0.96716 1.01425 1.20451 0.98011 0.92594 0.98441 1.18867 1.03667 0.91899 1.11746 1.20741 0.97057 0.95785 0.82531 1.46089 1.17321 1.37995 1.08587 1.22846 1.03209 1.07294 0.83548 1.22271 0.93072 1.03547 0.99683 1.70255 1.25663 1.23153 0.99835 1.24274 0.91075 1.05048 0.93954 1.96714 1.61645 1.90319 1.38037 1.20554 0.94300 0.97021 0.96374 1.20950 1.03931 0.92690 1.07246 0.90596 0.86388 0.89649 0.89169 0.89645 0.80588 0.81020 0.88758 0.88776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -19.40 10.98 55.55 0.61 -18.79 16 2 C 0.08 1.84 5.13 -17.34 -0.09 1.75 16 3 Si 0.91 17.95 29.60 -169.99 -5.03 12.92 16 4 H -0.27 -5.21 7.11 56.52 0.40 -4.80 16 5 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 6 H -0.26 -5.12 7.11 56.52 0.40 -4.72 16 7 C -0.45 -11.65 9.05 -37.74 -0.34 -11.99 16 8 H 0.08 1.99 7.91 -52.49 -0.42 1.57 16 9 C 0.12 3.09 5.58 -106.82 -0.60 2.49 16 10 C -0.17 -4.24 8.70 -38.87 -0.34 -4.58 16 11 C -0.08 -1.66 9.67 -39.66 -0.38 -2.04 16 12 C -0.26 -5.26 5.47 -104.33 -0.57 -5.83 16 13 C 0.16 2.56 5.97 -5.19 -0.03 2.53 16 14 N -0.42 -6.97 2.75 -117.87 -0.32 -7.29 16 15 C -0.03 -0.47 11.57 -16.52 -0.19 -0.66 16 16 C -0.04 -0.54 11.87 -17.80 -0.21 -0.75 16 17 N -0.47 -8.49 11.26 -13.04 -0.15 -8.64 16 18 C 0.20 3.47 8.36 -90.25 -0.75 2.72 16 19 Br 0.05 0.81 31.20 -68.01 -2.12 -1.31 16 20 C -0.06 -1.35 9.16 -39.66 -0.36 -1.71 16 21 C -0.23 -5.42 9.80 -38.87 -0.38 -5.80 16 22 H 0.28 6.33 8.30 -40.82 -0.34 6.00 16 23 H 0.12 3.04 6.16 -52.49 -0.32 2.72 16 24 H 0.09 1.66 8.06 -52.48 -0.42 1.24 16 25 H 0.09 1.26 8.06 -51.93 -0.42 0.84 16 26 H 0.09 1.27 7.95 -51.93 -0.41 0.86 16 27 H 0.18 1.99 8.06 -52.49 -0.42 1.57 16 28 H 0.17 2.03 8.06 -52.49 -0.42 1.61 16 29 H 0.09 1.78 6.02 -52.49 -0.32 1.46 16 30 H 0.09 2.12 8.06 -52.49 -0.42 1.70 16 LS Contribution 284.04 15.07 4.28 4.28 Total: -1.00 -27.86 284.04 -9.70 -37.56 By element: Atomic # 1 Polarization: 7.85 SS G_CDS: -2.71 Total: 5.14 kcal Atomic # 6 Polarization: -19.63 SS G_CDS: -4.25 Total: -23.88 kcal Atomic # 7 Polarization: -34.85 SS G_CDS: 0.14 Total: -34.71 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Atomic # 35 Polarization: 0.81 SS G_CDS: -2.12 Total: -1.31 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.86 -9.70 -37.56 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473090321.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.912 kcal (2) G-P(sol) polarization free energy of solvation -27.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.049 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.559 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.353 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds