Wall clock time and date at job start Tue Mar 31 2020 09:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30832 * 1 3 3 Si 1.86797 * 119.99770 * 2 1 4 4 H 1.48492 * 109.47393 * 269.99948 * 3 2 1 5 5 H 1.48499 * 109.47138 * 30.00169 * 3 2 1 6 6 H 1.48506 * 109.47011 * 149.99852 * 3 2 1 7 7 C 1.39946 * 120.00122 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00020 * 161.48079 * 7 2 1 9 9 C 1.41396 * 119.99798 * 341.48674 * 7 2 1 10 10 C 1.40714 * 120.24654 * 335.88232 * 9 7 2 11 11 C 1.37617 * 119.74228 * 179.78990 * 10 9 7 12 12 C 1.38638 * 120.25160 * 0.48806 * 11 10 9 13 13 C 1.50697 * 119.74978 * 179.76375 * 12 11 10 14 14 N 1.46502 * 109.47187 * 269.97891 * 13 12 11 15 15 C 1.36995 * 126.40526 * 99.70976 * 14 13 12 16 16 C 1.34631 * 106.83303 * 179.90072 * 15 14 13 17 17 N 1.34180 * 108.03815 * 0.36805 * 16 15 14 18 18 C 1.30583 * 109.26024 * 359.77039 * 17 16 15 19 19 Br 1.89101 * 125.66042 * 180.02562 * 18 17 16 20 20 C 1.38638 * 120.49817 * 359.74126 * 12 11 10 21 21 C 1.37617 * 120.24886 * 0.02562 * 20 12 11 22 22 H 0.96994 * 119.99932 * 359.97438 * 1 2 3 23 23 H 1.07992 * 120.12648 * 0.02562 * 10 9 7 24 24 H 1.08004 * 119.87711 * 180.23011 * 11 10 9 25 25 H 1.09001 * 109.47224 * 29.97846 * 13 12 11 26 26 H 1.08996 * 109.47126 * 149.98242 * 13 12 11 27 27 H 1.07996 * 126.58551 * 0.02562 * 15 14 13 28 28 H 1.07992 * 125.98197 * 180.11135 * 16 15 14 29 29 H 1.07996 * 119.87031 * 179.97438 * 20 12 11 30 30 H 1.08002 * 120.12491 * 179.97438 * 21 20 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2422 1.6177 0.0000 4 1 2.4898 2.0465 -1.4000 5 1 1.4397 2.6526 0.7001 6 1 3.5398 1.4402 0.7001 7 6 2.0081 -1.2119 0.0005 8 1 3.0461 -1.2363 -0.2965 9 6 1.3560 -2.4046 0.3899 10 6 0.2297 -2.3542 1.2319 11 6 -0.3996 -3.5211 1.6009 12 6 0.0781 -4.7436 1.1545 13 6 -0.6166 -6.0148 1.5698 14 7 -0.0226 -6.5121 2.8133 15 6 -0.5280 -6.3523 4.0766 16 6 0.3268 -6.9630 4.9186 17 7 1.3315 -7.4751 4.1915 18 6 1.1291 -7.2088 2.9292 19 35 2.2598 -7.7152 1.5006 20 6 1.1898 -4.8055 0.3285 21 6 1.8321 -3.6511 -0.0571 22 1 -0.4850 0.8400 0.0004 23 1 -0.1417 -1.4033 1.5841 24 1 -1.2665 -3.4847 2.2441 25 1 -1.6763 -5.8147 1.7280 26 1 -0.5012 -6.7644 0.7870 27 1 -1.4384 -5.8372 4.3452 28 1 0.2241 -7.0258 5.9917 29 1 1.5536 -5.7633 -0.0130 30 1 2.6982 -3.7016 -0.7003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001473090321.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:13 Heat of formation + Delta-G solvation = 65.147598 kcal Electronic energy + Delta-G solvation = -16509.004925 eV Core-core repulsion = 13736.492642 eV Total energy + Delta-G solvation = -2772.512283 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 306.006 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -43.01042 -39.51790 -36.24491 -34.79382 -32.92097 -31.91776 -31.18131 -29.67527 -28.55566 -25.73341 -23.13241 -22.38805 -22.21752 -21.30715 -19.29255 -18.28673 -17.31887 -16.87507 -15.88955 -15.68939 -15.46211 -15.11443 -14.99168 -14.35310 -14.24993 -13.92177 -13.50633 -13.35128 -12.94349 -12.76194 -12.52664 -12.31859 -12.04202 -11.85374 -11.51769 -11.15859 -11.15170 -11.01406 -10.61916 -9.43665 -9.37816 -9.31948 -8.71404 -6.40493 0.05647 0.74686 0.97999 1.12670 1.36172 1.42850 1.51003 2.02775 2.07997 2.17639 2.71397 3.68276 3.80622 3.89576 4.13731 4.41133 4.46663 4.49181 4.54662 4.65129 4.99659 5.08321 5.17313 5.32853 5.40223 5.64752 5.70088 5.88406 5.95030 6.05320 6.12671 6.33543 6.64320 6.86825 6.88255 6.97171 8.25182 Molecular weight = 306.01amu Principal moments of inertia in cm(-1) A = 0.024644 B = 0.004511 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1135.890408 B = 6206.205584 C = 6766.882824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.039 3.961 3 Si 0.979 3.021 4 H -0.260 1.260 5 H -0.264 1.264 6 H -0.262 1.262 7 C -0.497 4.497 8 H 0.074 0.926 9 C 0.087 3.913 10 C -0.196 4.196 11 C -0.077 4.077 12 C -0.244 4.244 13 C 0.162 3.838 14 N -0.424 5.424 15 C -0.026 4.026 16 C -0.047 4.047 17 N -0.495 5.495 18 C 0.169 3.831 19 Br 0.058 6.942 20 C -0.065 4.065 21 C -0.249 4.249 22 H 0.291 0.709 23 H 0.101 0.899 24 H 0.114 0.886 25 H 0.122 0.878 26 H 0.100 0.900 27 H 0.214 0.786 28 H 0.201 0.799 29 H 0.117 0.883 30 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.652 -10.519 3.988 11.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.441 5.441 2 C -0.177 4.177 3 Si 0.800 3.200 4 H -0.185 1.185 5 H -0.188 1.188 6 H -0.186 1.186 7 C -0.526 4.526 8 H 0.092 0.908 9 C 0.085 3.915 10 C -0.216 4.216 11 C -0.095 4.095 12 C -0.246 4.246 13 C 0.042 3.958 14 N -0.106 5.106 15 C -0.162 4.162 16 C -0.197 4.197 17 N -0.217 5.217 18 C -0.170 4.170 19 Br 0.139 6.861 20 C -0.084 4.084 21 C -0.269 4.269 22 H 0.101 0.899 23 H 0.119 0.881 24 H 0.132 0.868 25 H 0.140 0.860 26 H 0.119 0.881 27 H 0.230 0.770 28 H 0.218 0.782 29 H 0.135 0.865 30 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.865 -10.957 3.597 11.682 hybrid contribution -0.380 1.490 -0.220 1.554 sum -2.245 -9.466 3.378 10.299 Atomic orbital electron populations 1.69854 1.08931 1.30823 1.34489 1.26737 0.95493 1.04437 0.91064 0.85248 0.79142 0.76002 0.79653 1.18485 1.18776 1.18581 1.19897 0.98633 0.92800 1.41271 0.90792 1.18030 0.91686 0.92997 0.88793 1.21248 1.00434 0.97301 1.02611 1.20765 0.98424 0.92144 0.98211 1.19291 1.02476 0.93378 1.09461 1.20785 0.98074 0.93894 0.83044 1.46026 1.17264 1.38139 1.09203 1.23516 1.03945 1.06243 0.82469 1.22870 0.92451 1.03177 1.01172 1.70234 1.26996 1.24010 1.00452 1.24533 0.91908 1.06163 0.94347 1.96699 1.61620 1.90297 1.37464 1.20856 0.94322 0.97101 0.96097 1.21137 1.04590 0.93202 1.07943 0.89868 0.88103 0.86823 0.85970 0.88144 0.76968 0.78193 0.86501 0.88828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -41.30 10.98 21.83 0.24 -41.06 16 2 C 0.04 1.92 5.13 85.26 0.44 2.36 16 3 Si 0.98 37.39 29.60 68.60 2.03 39.42 16 4 H -0.26 -9.53 7.11 99.48 0.71 -8.83 16 5 H -0.26 -9.49 7.11 99.48 0.71 -8.78 16 6 H -0.26 -9.99 7.11 99.48 0.71 -9.29 16 7 C -0.50 -26.55 9.05 23.46 0.21 -26.34 16 8 H 0.07 3.85 7.91 -2.91 -0.02 3.83 16 9 C 0.09 4.65 5.58 -21.29 -0.12 4.53 16 10 C -0.20 -9.92 8.70 22.73 0.20 -9.73 16 11 C -0.08 -3.24 9.67 22.22 0.21 -3.02 16 12 C -0.24 -9.34 5.47 -19.67 -0.11 -9.44 16 13 C 0.16 4.62 5.97 85.63 0.51 5.13 16 14 N -0.42 -12.73 2.75 -526.84 -1.45 -14.17 16 15 C -0.03 -0.66 11.57 83.06 0.96 0.31 16 16 C -0.05 -1.30 11.87 83.51 0.99 -0.31 16 17 N -0.50 -16.99 11.26 -195.17 -2.20 -19.19 16 18 C 0.17 5.64 8.36 180.22 1.51 7.15 16 19 Br 0.06 1.74 31.20 -20.37 -0.64 1.10 16 20 C -0.07 -2.69 9.16 22.22 0.20 -2.49 16 21 C -0.25 -12.04 9.80 22.73 0.22 -11.82 16 22 H 0.29 13.20 8.30 -92.71 -0.77 12.43 16 23 H 0.10 5.36 6.16 -2.91 -0.02 5.34 16 24 H 0.11 4.07 8.06 -2.91 -0.02 4.05 16 25 H 0.12 2.77 8.06 -2.39 -0.02 2.75 16 26 H 0.10 2.61 7.95 -2.39 -0.02 2.59 16 27 H 0.21 3.68 8.06 -2.91 -0.02 3.65 16 28 H 0.20 4.06 8.06 -2.91 -0.02 4.04 16 29 H 0.12 4.23 6.02 -2.91 -0.02 4.21 16 30 H 0.09 4.36 8.06 -2.91 -0.02 4.34 16 Total: -1.00 -61.63 284.04 4.38 -57.24 By element: Atomic # 1 Polarization: 19.18 SS G_CDS: 1.16 Total: 20.34 kcal Atomic # 6 Polarization: -48.91 SS G_CDS: 5.23 Total: -43.68 kcal Atomic # 7 Polarization: -71.02 SS G_CDS: -3.40 Total: -74.42 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Atomic # 35 Polarization: 1.74 SS G_CDS: -0.64 Total: 1.10 kcal Total: -61.63 4.38 -57.24 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001473090321.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.391 kcal (2) G-P(sol) polarization free energy of solvation -61.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.243 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds