Wall clock time and date at job start Tue Mar 31 2020 09:07:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53000 * 109.46630 * 2 1 4 4 H 1.08993 * 109.47594 * 305.33024 * 3 2 1 5 5 C 1.50700 * 109.46807 * 185.32925 * 3 2 1 6 6 H 1.07998 * 120.00282 * 240.00370 * 5 3 2 7 7 C 1.37879 * 119.99846 * 60.00392 * 5 3 2 8 8 N 1.31524 * 119.99961 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 120.00198 * 180.02562 * 7 5 3 10 10 H 1.48493 * 109.47560 * 89.99733 * 9 7 5 11 11 H 1.48502 * 109.47095 * 209.99831 * 9 7 5 12 12 H 1.48504 * 109.46946 * 329.99434 * 9 7 5 13 13 N 1.46905 * 109.47157 * 65.33475 * 3 2 1 14 14 C 1.46893 * 110.99896 * 259.27169 * 13 3 2 15 15 H 1.08999 * 109.47023 * 31.62826 * 14 13 3 16 16 C 1.53001 * 109.47328 * 271.62668 * 14 13 3 17 17 C 1.53000 * 109.47233 * 151.62437 * 14 13 3 18 18 C 1.52995 * 109.47305 * 203.07741 * 17 14 13 19 19 C 1.53001 * 109.47249 * 305.14384 * 18 17 14 20 20 C 1.53001 * 109.47005 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.47647 * 300.00167 * 20 19 18 22 22 C 1.53001 * 109.47055 * 59.99863 * 21 20 19 23 23 C 1.53008 * 109.46810 * 60.00237 * 22 21 20 24 24 C 1.52998 * 109.47118 * 299.99724 * 23 22 21 25 25 C 1.52999 * 109.47233 * 60.00541 * 20 19 18 26 26 C 1.53001 * 109.47647 * 300.00289 * 24 23 22 27 27 C 1.52998 * 109.47352 * 65.14520 * 18 17 14 28 28 H 1.08996 * 109.47276 * 295.12883 * 1 2 3 29 29 H 1.09007 * 109.46793 * 175.12206 * 1 2 3 30 30 H 1.09006 * 109.47053 * 55.13216 * 1 2 3 31 31 H 1.08996 * 109.46574 * 119.99771 * 2 1 3 32 32 H 1.08993 * 109.47245 * 239.99928 * 2 1 3 33 33 H 0.96998 * 120.00179 * 180.02562 * 8 7 5 34 34 H 1.00902 * 110.99874 * 135.31785 * 13 3 2 35 35 H 1.09004 * 109.46658 * 309.02904 * 16 14 13 36 36 H 1.08995 * 109.46855 * 69.03052 * 16 14 13 37 37 H 1.08998 * 109.46955 * 189.03159 * 16 14 13 38 38 H 1.09000 * 109.47318 * 323.07745 * 17 14 13 39 39 H 1.08997 * 109.47003 * 83.07774 * 17 14 13 40 40 H 1.08994 * 109.47311 * 300.00480 * 19 18 17 41 41 H 1.09005 * 109.46727 * 59.99978 * 19 18 17 42 42 H 1.09004 * 109.46789 * 180.02562 * 20 19 18 43 43 H 1.09005 * 109.47076 * 300.00417 * 21 20 19 44 44 H 1.08998 * 109.47107 * 180.02562 * 21 20 19 45 45 H 1.08994 * 109.47311 * 179.97438 * 22 21 20 46 46 H 1.08993 * 109.46723 * 180.02562 * 23 22 21 47 47 H 1.08998 * 109.47049 * 59.99659 * 23 22 21 48 48 H 1.08996 * 109.47064 * 179.97438 * 24 23 22 49 49 H 1.08998 * 109.47185 * 179.97438 * 25 20 19 50 50 H 1.09007 * 109.47097 * 59.99191 * 25 20 19 51 51 H 1.08998 * 109.46885 * 300.00410 * 26 24 23 52 52 H 1.08994 * 109.47651 * 179.97438 * 26 24 23 53 53 H 1.08995 * 109.47588 * 300.00488 * 27 18 17 54 54 H 1.09004 * 109.47015 * 60.00034 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6008 1.9832 -0.8383 5 6 3.5412 1.4446 -0.1320 6 1 4.1507 1.8877 0.6417 7 6 4.1365 0.8809 -1.2405 8 7 3.3943 0.3409 -2.1825 9 14 5.9973 0.8828 -1.4038 10 1 6.5496 -0.3503 -0.7879 11 1 6.3680 0.9270 -2.8412 12 1 6.5537 2.0735 -0.7123 13 7 1.6582 2.0969 1.2587 14 6 0.4806 2.9545 1.0700 15 1 -0.1581 2.5295 0.2958 16 6 0.9314 4.3543 0.6478 17 6 -0.3003 3.0445 2.3827 18 6 -1.7544 3.4168 2.0865 19 6 -1.7932 4.7044 1.2609 20 6 -3.2473 5.0764 0.9642 21 6 -3.9128 3.9456 0.1772 22 6 -3.8740 2.6581 1.0028 23 6 -4.6240 2.8735 2.3190 24 6 -3.9586 4.0043 3.1060 25 6 -3.9973 5.2918 2.2803 26 6 -2.5044 3.6323 3.4027 27 6 -2.4204 2.2862 1.2997 28 1 -0.3633 0.4364 0.9304 29 1 -0.3633 -1.0240 -0.0874 30 1 -0.3633 0.5875 -0.8432 31 1 1.8933 -0.5138 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.8131 -0.0560 -2.9622 34 1 2.4301 2.6216 1.6420 35 1 1.6931 4.7146 1.3393 36 1 1.3451 4.3142 -0.3598 37 1 0.0772 5.0311 0.6633 38 1 -0.2684 2.0809 2.8913 39 1 0.1473 3.8068 3.0202 40 1 -1.3187 5.5098 1.8213 41 1 -1.2592 4.5508 0.3231 42 1 -3.2749 5.9934 0.3756 43 1 -3.3784 3.7922 -0.7604 44 1 -4.9486 4.2110 -0.0345 45 1 -4.3485 1.8527 0.4424 46 1 -4.5960 1.9565 2.9073 47 1 -5.6599 3.1387 2.1076 48 1 -4.4931 4.1580 4.0434 49 1 -5.0331 5.5573 2.0689 50 1 -3.5232 6.0974 2.8410 51 1 -2.4768 2.7150 3.9908 52 1 -2.0302 4.4380 3.9629 53 1 -1.8865 2.1326 0.3620 54 1 -2.3928 1.3690 1.8880 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474420036.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:08 Heat of formation + Delta-G solvation = -38.558749 kcal Electronic energy + Delta-G solvation = -27956.095040 eV Core-core repulsion = 24697.395616 eV Total energy + Delta-G solvation = -3258.699423 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 305.241 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.56682 -37.25930 -34.61295 -32.73076 -32.58534 -32.28195 -31.09467 -28.67333 -26.86932 -25.88347 -25.68341 -25.38882 -22.73890 -21.57572 -21.35740 -20.61205 -19.42213 -19.23581 -17.49287 -16.46606 -15.08228 -14.83917 -14.56708 -14.42799 -14.32101 -14.26587 -13.96069 -13.60168 -13.28010 -13.17777 -12.94687 -12.67209 -12.54767 -12.35948 -12.12580 -11.99384 -11.73111 -11.55266 -11.50436 -11.11886 -11.02675 -10.87407 -10.82259 -10.76497 -10.68990 -10.67534 -10.43789 -10.32045 -10.08513 -10.06163 -9.63949 -9.51228 -9.47228 -9.45733 -9.09116 -8.76560 -8.39648 -7.11290 -5.99266 -4.06562 3.30146 3.36822 3.39508 4.41793 4.53037 4.53650 4.56338 5.06293 5.10107 5.21259 5.25963 5.27349 5.29016 5.33130 5.39207 5.41265 5.44986 5.55688 5.63398 5.72395 5.74953 5.79955 5.82498 5.88734 6.00675 6.01441 6.04948 6.09194 6.11700 6.13071 6.20330 6.25183 6.28007 6.31517 6.39888 6.41595 6.46202 6.49799 6.56472 6.62305 6.66000 6.69946 6.71818 6.87238 6.90850 7.15763 7.23901 7.52729 7.67866 7.81783 8.02932 8.33843 8.49262 8.78625 9.08507 9.59373 11.05306 Molecular weight = 305.24amu Principal moments of inertia in cm(-1) A = 0.026385 B = 0.003719 C = 0.003588 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.961744 B = 7527.672587 C = 7802.663127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.105 4.105 3 C 0.220 3.780 4 H 0.007 0.993 5 C -0.524 4.524 6 H 0.057 0.943 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.892 3.108 10 H -0.280 1.280 11 H -0.287 1.287 12 H -0.275 1.275 13 N -0.685 5.685 14 C 0.084 3.916 15 H 0.076 0.924 16 C -0.201 4.201 17 C -0.098 4.098 18 C -0.047 4.047 19 C -0.112 4.112 20 C -0.088 4.088 21 C -0.107 4.107 22 C -0.087 4.087 23 C -0.106 4.106 24 C -0.085 4.085 25 C -0.106 4.106 26 C -0.101 4.101 27 C -0.103 4.103 28 H 0.048 0.952 29 H 0.025 0.975 30 H 0.033 0.967 31 H 0.034 0.966 32 H 0.087 0.913 33 H 0.260 0.740 34 H 0.328 0.672 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.051 0.949 40 H 0.060 0.940 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.065 0.935 46 H 0.059 0.941 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.055 0.945 50 H 0.058 0.942 51 H 0.060 0.940 52 H 0.058 0.942 53 H 0.070 0.930 54 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.061 8.201 7.917 19.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.144 4.144 3 C 0.112 3.888 4 H 0.025 0.975 5 C -0.563 4.563 6 H 0.075 0.925 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.720 3.280 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.200 1.200 13 N -0.315 5.315 14 C -0.027 4.027 15 H 0.094 0.906 16 C -0.259 4.259 17 C -0.136 4.136 18 C -0.048 4.048 19 C -0.149 4.149 20 C -0.107 4.107 21 C -0.145 4.145 22 C -0.105 4.105 23 C -0.143 4.143 24 C -0.104 4.104 25 C -0.143 4.143 26 C -0.138 4.138 27 C -0.140 4.140 28 H 0.067 0.933 29 H 0.044 0.956 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.146 0.854 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.088 0.912 39 H 0.070 0.930 40 H 0.078 0.922 41 H 0.099 0.901 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.084 0.916 46 H 0.078 0.922 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.074 0.926 50 H 0.076 0.924 51 H 0.079 0.921 52 H 0.076 0.924 53 H 0.088 0.912 54 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -16.398 7.556 7.953 19.729 hybrid contribution 1.475 0.699 -0.690 1.772 sum -14.923 8.255 7.264 18.537 Atomic orbital electron populations 1.21870 0.99645 0.98529 0.99903 1.21529 0.91521 0.99739 1.01615 1.19086 0.93864 0.90981 0.84852 0.97537 1.21478 0.91811 1.37984 1.05005 0.92526 1.24910 0.97982 0.95199 0.95731 1.69895 1.34702 1.38577 1.09432 0.86602 0.85910 0.78412 0.77082 1.20662 1.21325 1.20039 1.60841 1.07218 1.32612 1.30849 1.21658 0.93895 0.91104 0.96060 0.90560 1.23097 1.01712 0.99472 1.01640 1.21687 0.92621 1.01358 0.97957 1.20410 0.95023 0.94836 0.94530 1.22036 0.95097 0.96981 1.00807 1.21100 0.95776 0.97844 0.95947 1.21526 0.99911 0.94841 0.98194 1.21058 0.96519 0.97155 0.95793 1.21523 0.98308 0.98207 0.96303 1.21039 0.96413 0.95096 0.97813 1.21521 0.99654 0.96999 0.96140 1.21560 0.94386 1.00996 0.96884 1.21654 0.94207 0.97513 1.00663 0.93291 0.95612 0.94758 0.94673 0.89515 0.93002 0.85411 0.93434 0.92971 0.90955 0.91244 0.93008 0.92172 0.90094 0.91788 0.91982 0.92595 0.91635 0.92209 0.92592 0.91884 0.92592 0.92354 0.92140 0.92355 0.91163 0.92031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 8.53 37.16 0.32 -2.59 16 2 C -0.11 -2.56 5.45 -26.73 -0.15 -2.71 16 3 C 0.22 5.42 2.07 -68.86 -0.14 5.28 16 4 H 0.01 0.19 7.48 -51.93 -0.39 -0.20 16 5 C -0.52 -14.24 8.60 -34.44 -0.30 -14.53 16 6 H 0.06 1.52 7.41 -52.49 -0.39 1.13 16 7 C 0.06 1.75 5.29 -17.81 -0.09 1.66 16 8 N -0.89 -25.24 11.29 55.43 0.63 -24.61 16 9 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 13 N -0.69 -14.22 5.85 -100.96 -0.59 -14.81 16 14 C 0.08 1.44 1.11 -67.72 -0.08 1.36 16 15 H 0.08 1.41 3.89 -51.93 -0.20 1.21 16 16 C -0.20 -3.28 8.58 37.16 0.32 -2.96 16 17 C -0.10 -1.43 4.23 -26.73 -0.11 -1.54 16 18 C -0.05 -0.58 0.54 -154.51 -0.08 -0.67 16 19 C -0.11 -1.33 2.80 -26.73 -0.07 -1.40 16 20 C -0.09 -0.93 3.19 -90.62 -0.29 -1.22 16 21 C -0.11 -1.15 5.19 -26.73 -0.14 -1.29 16 22 C -0.09 -0.96 3.19 -90.64 -0.29 -1.25 16 23 C -0.11 -1.06 5.19 -26.73 -0.14 -1.19 16 24 C -0.09 -0.84 3.19 -90.62 -0.29 -1.13 16 25 C -0.11 -1.01 5.19 -26.73 -0.14 -1.15 16 26 C -0.10 -1.11 4.47 -26.73 -0.12 -1.23 16 27 C -0.10 -1.32 3.81 -26.76 -0.10 -1.43 16 28 H 0.05 0.93 6.44 -51.93 -0.33 0.60 16 29 H 0.02 0.48 8.14 -51.92 -0.42 0.06 16 30 H 0.03 0.70 7.94 -51.93 -0.41 0.28 16 31 H 0.03 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.09 2.36 5.94 -51.93 -0.31 2.05 16 33 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 34 H 0.33 6.91 7.47 -39.29 -0.29 6.62 16 35 H 0.05 0.76 7.94 -51.93 -0.41 0.35 16 36 H 0.05 0.96 8.12 -51.93 -0.42 0.54 16 37 H 0.07 1.00 3.80 -51.93 -0.20 0.81 16 38 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 39 H 0.05 0.73 7.94 -51.93 -0.41 0.32 16 40 H 0.06 0.70 7.66 -51.93 -0.40 0.30 16 41 H 0.08 1.07 5.25 -51.93 -0.27 0.79 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 47 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 49 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 50 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 51 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 52 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 53 H 0.07 1.03 5.94 -51.93 -0.31 0.72 16 54 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 LS Contribution 372.27 15.07 5.61 5.61 Total: -1.00 -26.99 372.27 -11.50 -38.49 By element: Atomic # 1 Polarization: 17.26 SS G_CDS: -10.23 Total: 7.04 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: -1.90 Total: -27.98 kcal Atomic # 7 Polarization: -39.45 SS G_CDS: 0.04 Total: -39.41 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -26.99 -11.50 -38.49 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474420036.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.073 kcal (2) G-P(sol) polarization free energy of solvation -26.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.062 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds