Wall clock time and date at job start Tue Mar 31 2020 09:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47014 * 2 1 4 4 H 1.08997 * 109.47647 * 305.42737 * 3 2 1 5 5 C 1.50702 * 109.47048 * 185.42259 * 3 2 1 6 6 H 1.08002 * 119.99904 * 240.00172 * 5 3 2 7 7 C 1.37876 * 120.00018 * 60.00274 * 5 3 2 8 8 N 1.31516 * 119.99722 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00255 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.46829 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46944 * 119.99918 * 9 7 5 12 12 H 1.48498 * 109.46865 * 240.00192 * 9 7 5 13 13 N 1.46907 * 109.46942 * 65.42652 * 3 2 1 14 14 C 1.46903 * 110.99935 * 199.22374 * 13 3 2 15 15 H 1.08998 * 109.46946 * 321.44457 * 14 13 3 16 16 C 1.53004 * 109.47052 * 81.44072 * 14 13 3 17 17 C 1.52998 * 109.47124 * 201.44056 * 14 13 3 18 18 C 1.53006 * 109.46809 * 68.22457 * 17 14 13 19 19 C 1.53004 * 109.46610 * 176.26702 * 18 17 14 20 20 C 1.53001 * 109.46823 * 179.97438 * 19 18 17 21 21 C 1.52999 * 109.47222 * 300.00403 * 20 19 18 22 22 C 1.52992 * 109.47448 * 59.99763 * 21 20 19 23 23 C 1.52997 * 109.47185 * 60.00208 * 22 21 20 24 24 C 1.53006 * 109.47113 * 299.99915 * 23 22 21 25 25 C 1.53004 * 109.46938 * 60.00231 * 24 23 22 26 26 C 1.52992 * 109.47167 * 300.00114 * 24 23 22 27 27 C 1.53000 * 109.46906 * 296.26575 * 18 17 14 28 28 H 1.08999 * 109.47188 * 304.65911 * 1 2 3 29 29 H 1.08998 * 109.46888 * 64.65941 * 1 2 3 30 30 H 1.08996 * 109.47454 * 184.65821 * 1 2 3 31 31 H 1.08997 * 109.47188 * 239.99951 * 2 1 3 32 32 H 1.09004 * 109.47008 * 119.99788 * 2 1 3 33 33 H 0.97008 * 120.00221 * 179.97438 * 8 7 5 34 34 H 1.00893 * 111.00052 * 323.17660 * 13 3 2 35 35 H 1.08996 * 109.46740 * 174.99677 * 16 14 13 36 36 H 1.08999 * 109.46700 * 294.99515 * 16 14 13 37 37 H 1.08995 * 109.46940 * 54.99322 * 16 14 13 38 38 H 1.08995 * 109.46853 * 188.22141 * 17 14 13 39 39 H 1.08995 * 109.46817 * 308.22628 * 17 14 13 40 40 H 1.08995 * 109.47360 * 299.99759 * 19 18 17 41 41 H 1.08994 * 109.47249 * 59.99906 * 19 18 17 42 42 H 1.09000 * 109.47016 * 180.02562 * 20 19 18 43 43 H 1.09006 * 109.47018 * 299.99388 * 21 20 19 44 44 H 1.09003 * 109.47229 * 180.02562 * 21 20 19 45 45 H 1.09001 * 109.46902 * 179.97438 * 22 21 20 46 46 H 1.09000 * 109.47324 * 179.97438 * 23 22 21 47 47 H 1.08999 * 109.47389 * 59.99882 * 23 22 21 48 48 H 1.08994 * 109.47179 * 179.97438 * 24 23 22 49 49 H 1.08995 * 109.47595 * 59.99818 * 25 24 23 50 50 H 1.09000 * 109.47052 * 180.02562 * 25 24 23 51 51 H 1.09000 * 109.46957 * 299.99744 * 26 24 23 52 52 H 1.09001 * 109.47432 * 179.97438 * 26 24 23 53 53 H 1.08996 * 109.47496 * 299.99795 * 27 18 17 54 54 H 1.09000 * 109.47226 * 60.00459 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5995 1.9837 -0.8373 5 6 3.5410 1.4446 -0.1343 6 1 4.1517 1.8873 0.6388 7 6 4.1347 0.8815 -1.2440 8 7 3.3910 0.3421 -2.1850 9 14 5.9952 0.8848 -1.4108 10 1 6.5973 1.5468 -0.2257 11 1 6.4867 -0.5137 -1.4989 12 1 6.3806 1.6233 -2.6401 13 7 1.6601 2.0962 1.2596 14 6 1.7130 3.5586 1.1307 15 1 2.5722 3.8387 0.5212 16 6 0.4299 4.0585 0.4637 17 6 1.8451 4.1885 2.5187 18 6 3.2196 3.8541 3.1018 19 6 3.3877 4.5604 4.4486 20 6 4.7620 4.2255 5.0319 21 6 4.8766 2.7129 5.2314 22 6 4.7084 2.0067 3.8847 23 6 5.7998 2.4782 2.9217 24 6 5.6853 3.9909 2.7222 25 6 5.8535 4.6971 4.0690 26 6 4.3111 4.3257 2.1389 27 6 3.3347 2.3415 3.3011 28 1 -0.3633 0.5844 0.8453 29 1 -0.3633 0.4398 -0.9288 30 1 -0.3634 -1.0242 0.0835 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 3.8086 -0.0538 -2.9660 34 1 0.7471 1.7928 1.5634 35 1 0.4294 5.1483 0.4483 36 1 0.3804 3.6806 -0.5575 37 1 -0.4338 3.7025 1.0252 38 1 1.7379 5.2702 2.4384 39 1 1.0674 3.7936 3.1723 40 1 3.3057 5.6379 4.3065 41 1 2.6104 4.2242 5.1347 42 1 4.8816 4.7283 5.9916 43 1 4.0990 2.3769 5.9175 44 1 5.8554 2.4744 5.6474 45 1 4.7905 0.9291 4.0268 46 1 5.6803 1.9747 1.9624 47 1 6.7789 2.2397 3.3373 48 1 6.4631 4.3268 2.0365 49 1 6.8325 4.4586 4.4846 50 1 5.7714 5.7747 3.9269 51 1 4.1913 3.8225 1.1794 52 1 4.2293 5.4033 1.9971 53 1 2.5575 2.0052 3.9873 54 1 3.2149 1.8384 2.3417 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001474420039.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:07:16 Heat of formation + Delta-G solvation = -40.468948 kcal Electronic energy + Delta-G solvation = -28890.238103 eV Core-core repulsion = 25631.455847 eV Total energy + Delta-G solvation = -3258.782256 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 305.241 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.06869 -37.24471 -34.39515 -32.27312 -32.17451 -32.00099 -31.26222 -28.73368 -26.14663 -25.70411 -25.45206 -25.19252 -22.89207 -21.27722 -20.88408 -20.32104 -19.48438 -18.99862 -17.10848 -16.10513 -15.07692 -14.66677 -14.29611 -14.09829 -13.97019 -13.86431 -13.67310 -13.46381 -13.20176 -12.90695 -12.74623 -12.64138 -12.37476 -12.21949 -11.95944 -11.73570 -11.64582 -11.48725 -11.30570 -11.03993 -10.89751 -10.71765 -10.58256 -10.50818 -10.38453 -10.30067 -10.17862 -10.11348 -9.93445 -9.76200 -9.64560 -9.46928 -9.11116 -9.03763 -8.98086 -8.82352 -8.31452 -6.88439 -5.94475 -3.97787 3.31581 3.40912 3.44248 4.46122 4.92889 4.94917 4.99150 5.26406 5.37148 5.41363 5.57628 5.59738 5.69495 5.71146 5.74827 5.79407 5.84219 5.89116 5.90061 5.97173 6.05675 6.10783 6.12492 6.20118 6.20937 6.21828 6.25512 6.36427 6.37645 6.41086 6.42943 6.45071 6.47467 6.48674 6.57596 6.62219 6.69060 6.70393 6.80577 6.89531 6.93921 7.04707 7.07071 7.14808 7.15770 7.23636 7.25740 7.60074 7.83223 7.83596 8.05956 8.36617 8.42993 8.82162 9.12691 9.67421 11.10947 Molecular weight = 305.24amu Principal moments of inertia in cm(-1) A = 0.012986 B = 0.007021 C = 0.005448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.707313 B = 3987.098774 C = 5138.168009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.123 4.123 3 C 0.216 3.784 4 H 0.000 1.000 5 C -0.492 4.492 6 H 0.074 0.926 7 C 0.057 3.943 8 N -0.895 5.895 9 Si 0.882 3.118 10 H -0.267 1.267 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.669 5.669 14 C 0.084 3.916 15 H 0.090 0.910 16 C -0.179 4.179 17 C -0.095 4.095 18 C -0.035 4.035 19 C -0.103 4.103 20 C -0.082 4.082 21 C -0.106 4.106 22 C -0.085 4.085 23 C -0.109 4.109 24 C -0.082 4.082 25 C -0.105 4.105 26 C -0.108 4.108 27 C -0.121 4.121 28 H 0.036 0.964 29 H 0.040 0.960 30 H 0.034 0.966 31 H 0.097 0.903 32 H 0.040 0.960 33 H 0.257 0.743 34 H 0.314 0.686 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.044 0.956 38 H 0.048 0.952 39 H 0.052 0.948 40 H 0.049 0.951 41 H 0.053 0.947 42 H 0.055 0.945 43 H 0.053 0.947 44 H 0.048 0.952 45 H 0.059 0.941 46 H 0.075 0.925 47 H 0.044 0.956 48 H 0.058 0.942 49 H 0.052 0.948 50 H 0.053 0.947 51 H 0.087 0.913 52 H 0.044 0.956 53 H 0.039 0.961 54 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.600 6.818 10.879 12.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.161 4.161 3 C 0.108 3.892 4 H 0.018 0.982 5 C -0.531 4.531 6 H 0.092 0.908 7 C -0.143 4.143 8 N -0.535 5.535 9 Si 0.710 3.290 10 H -0.192 1.192 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.300 5.300 14 C -0.027 4.027 15 H 0.108 0.892 16 C -0.238 4.238 17 C -0.133 4.133 18 C -0.035 4.035 19 C -0.140 4.140 20 C -0.100 4.100 21 C -0.144 4.144 22 C -0.104 4.104 23 C -0.146 4.146 24 C -0.101 4.101 25 C -0.142 4.142 26 C -0.145 4.145 27 C -0.158 4.158 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.053 0.947 31 H 0.115 0.885 32 H 0.059 0.941 33 H 0.067 0.933 34 H 0.132 0.868 35 H 0.065 0.935 36 H 0.073 0.927 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.071 0.929 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.067 0.933 45 H 0.077 0.923 46 H 0.094 0.906 47 H 0.063 0.937 48 H 0.077 0.923 49 H 0.070 0.930 50 H 0.072 0.928 51 H 0.106 0.894 52 H 0.063 0.937 53 H 0.057 0.943 54 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 0.053 6.674 10.974 12.844 hybrid contribution 0.213 0.193 -0.643 0.705 sum 0.266 6.866 10.331 12.407 Atomic orbital electron populations 1.21876 0.99837 0.99270 0.99681 1.21725 0.91043 1.00506 1.02866 1.19164 0.95377 0.89889 0.84737 0.98214 1.21416 0.91215 1.36142 1.04319 0.90764 1.24925 0.97530 0.95824 0.96055 1.69887 1.34418 1.39613 1.09614 0.86691 0.86600 0.77614 0.78074 1.19187 1.21358 1.21483 1.60971 1.31063 1.03863 1.34094 1.21584 0.96759 0.89420 0.94892 0.89168 1.22520 0.99340 1.00525 1.01443 1.21614 0.96653 0.98280 0.96746 1.20211 0.93821 0.96582 0.92881 1.21608 0.95914 0.99109 0.97380 1.20989 0.95516 0.96107 0.97412 1.21556 1.00149 0.94900 0.97795 1.21074 0.97218 0.98345 0.93737 1.21560 0.97256 0.95289 1.00530 1.20988 0.97712 0.95766 0.95608 1.21525 0.97735 0.99025 0.95940 1.21711 0.93264 0.99377 1.00184 1.22240 0.92877 0.94814 1.05839 0.94522 0.94089 0.94711 0.88502 0.94148 0.93315 0.86789 0.93465 0.92682 0.93683 0.93331 0.92913 0.93203 0.92873 0.92647 0.92840 0.93309 0.92255 0.90609 0.93703 0.92345 0.92965 0.92841 0.89415 0.93685 0.94257 0.83516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.79 9.81 37.16 0.36 -2.42 16 2 C -0.12 -2.74 5.40 -26.73 -0.14 -2.88 16 3 C 0.22 4.86 1.89 -68.86 -0.13 4.73 16 4 H 0.00 0.01 6.94 -51.93 -0.36 -0.35 16 5 C -0.49 -12.20 7.66 -34.44 -0.26 -12.47 16 6 H 0.07 1.82 3.70 -52.49 -0.19 1.62 16 7 C 0.06 1.49 5.29 -17.82 -0.09 1.40 16 8 N -0.90 -24.56 11.29 55.43 0.63 -23.94 16 9 Si 0.88 20.67 29.54 -169.99 -5.02 15.65 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 13 N -0.67 -12.48 2.85 -100.95 -0.29 -12.76 16 14 C 0.08 1.44 2.12 -67.71 -0.14 1.29 16 15 H 0.09 1.77 5.21 -51.93 -0.27 1.50 16 16 C -0.18 -2.84 9.14 37.16 0.34 -2.50 16 17 C -0.09 -1.43 4.08 -26.73 -0.11 -1.53 16 18 C -0.03 -0.53 0.54 -154.50 -0.08 -0.62 16 19 C -0.10 -1.40 4.47 -26.73 -0.12 -1.52 16 20 C -0.08 -1.08 3.19 -90.62 -0.29 -1.37 16 21 C -0.11 -1.47 5.19 -26.74 -0.14 -1.61 16 22 C -0.09 -1.36 3.19 -90.65 -0.29 -1.65 16 23 C -0.11 -1.83 5.19 -26.73 -0.14 -1.97 16 24 C -0.08 -1.28 3.19 -90.62 -0.29 -1.57 16 25 C -0.10 -1.41 5.19 -26.72 -0.14 -1.55 16 26 C -0.11 -1.76 4.04 -26.74 -0.11 -1.87 16 27 C -0.12 -2.02 3.75 -26.75 -0.10 -2.12 16 28 H 0.04 0.62 6.30 -51.93 -0.33 0.29 16 29 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 2.47 5.94 -51.93 -0.31 2.17 16 32 H 0.04 0.90 8.14 -51.93 -0.42 0.48 16 33 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.31 5.59 6.24 -39.30 -0.25 5.34 16 35 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 36 H 0.05 0.97 7.22 -51.93 -0.37 0.59 16 37 H 0.04 0.66 8.06 -51.93 -0.42 0.24 16 38 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 45 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 46 H 0.08 1.49 6.72 -51.93 -0.35 1.14 16 47 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 49 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 50 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 51 H 0.09 1.67 4.68 -51.93 -0.24 1.43 16 52 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 53 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 54 H 0.15 2.88 3.32 -51.93 -0.17 2.71 16 LS Contribution 367.54 15.07 5.54 5.54 Total: -1.00 -24.66 367.54 -11.03 -35.69 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: -10.01 Total: 10.06 kcal Atomic # 6 Polarization: -28.36 SS G_CDS: -1.88 Total: -30.24 kcal Atomic # 7 Polarization: -37.04 SS G_CDS: 0.34 Total: -36.70 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -24.66 -11.03 -35.69 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001474420039.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.781 kcal (2) G-P(sol) polarization free energy of solvation -24.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds