Wall clock time and date at job start Tue Mar 31 2020 09:15:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31623 * 1 3 3 Si 1.86801 * 119.99500 * 2 1 4 4 H 1.48500 * 109.46930 * 240.00360 * 3 2 1 5 5 H 1.48500 * 109.47308 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.46944 * 120.00546 * 3 2 1 7 7 C 1.38809 * 120.00234 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99706 * 156.14238 * 7 2 1 9 9 N 1.36933 * 120.00104 * 336.14651 * 7 2 1 10 10 C 1.46504 * 119.99968 * 326.55998 * 9 7 2 11 11 C 1.53004 * 109.47102 * 274.92027 * 10 9 7 12 12 C 1.50703 * 109.46757 * 180.02562 * 11 10 9 13 13 O 1.20822 * 120.00384 * 359.97438 * 12 11 10 14 14 O 1.34232 * 119.99622 * 179.97438 * 12 11 10 15 15 S 1.65596 * 120.00349 * 146.56336 * 9 7 2 16 16 O 1.42105 * 106.40018 * 336.46105 * 15 9 7 17 17 O 1.42094 * 106.40691 * 203.53725 * 15 9 7 18 18 C 1.76204 * 107.21912 * 89.99741 * 15 9 7 19 19 C 1.33642 * 122.74885 * 269.73200 * 18 15 9 20 20 S 1.76198 * 107.92260 * 179.97438 * 19 18 15 21 21 C 1.70975 * 90.28419 * 0.27895 * 20 19 18 22 22 N 1.29026 * 110.16638 * 359.83781 * 21 20 19 23 23 H 0.96991 * 120.00314 * 359.97438 * 1 2 3 24 24 H 1.09004 * 109.46742 * 34.91304 * 10 9 7 25 25 H 1.08992 * 109.47111 * 154.91366 * 10 9 7 26 26 H 1.09004 * 109.46732 * 299.99284 * 11 10 9 27 27 H 1.08992 * 109.47677 * 59.99685 * 11 10 9 28 28 H 0.96698 * 116.99572 * 179.97438 * 14 12 11 29 29 H 1.07998 * 126.03880 * 0.04797 * 19 18 15 30 30 H 1.07994 * 124.91810 * 179.83945 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.1038 1.6966 -1.2126 5 1 1.2850 2.7465 0.0006 6 1 3.1039 1.6965 1.2124 7 6 2.0103 -1.2021 -0.0005 8 1 3.0211 -1.2418 -0.3789 9 7 1.4134 -2.3376 0.4785 10 6 0.4612 -2.2521 1.5886 11 6 1.2223 -2.2704 2.9159 12 6 0.2427 -2.1831 4.0577 13 8 -0.9424 -2.1129 3.8331 14 8 0.6868 -2.1834 5.3245 15 16 1.7679 -3.8074 -0.1968 16 8 2.2295 -3.5427 -1.5145 17 8 0.6626 -4.6551 0.0839 18 6 3.1404 -4.4703 0.6874 19 6 4.4080 -4.2464 0.3283 20 16 5.4521 -5.0855 1.4729 21 6 4.0802 -5.6608 2.3157 22 7 3.0008 -5.2329 1.7530 23 1 -0.4850 0.8399 0.0004 24 1 -0.1076 -1.3256 1.5088 25 1 -0.2204 -3.1016 1.5488 26 1 1.7911 -3.1969 2.9957 27 1 1.9039 -1.4209 2.9557 28 1 0.0208 -2.1253 6.0231 29 1 4.7348 -3.6546 -0.5140 30 1 4.1125 -6.2910 3.1921 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601073089.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:15:26 Heat of formation + Delta-G solvation = -105.710111 kcal Electronic energy + Delta-G solvation = -21563.024295 eV Core-core repulsion = 17999.185314 eV Total energy + Delta-G solvation = -3563.838981 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 306.022 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.77660 -39.41263 -36.30246 -36.13107 -35.52708 -34.80722 -31.90977 -30.49249 -30.07775 -25.56650 -25.23663 -23.22073 -21.24681 -20.37264 -18.89882 -18.40753 -17.78178 -16.99392 -16.56811 -16.29053 -15.79138 -15.47440 -15.02600 -14.69743 -14.37665 -14.26699 -13.34053 -13.29117 -12.93222 -12.77874 -12.38301 -12.14383 -11.39640 -11.38342 -11.14553 -11.11377 -11.03423 -10.92217 -10.70287 -10.55779 -10.35922 -10.07431 -10.00039 -9.68447 -9.52919 -9.32683 -9.13857 -7.89251 -6.34922 -4.07354 0.56833 1.07684 1.46249 1.77261 2.51384 2.68430 3.16080 3.23167 3.23930 3.44677 4.06157 4.32192 4.43600 4.65605 4.93533 5.09387 5.23258 5.57931 5.67768 5.79281 5.89331 5.97683 6.28407 6.52405 6.84698 7.10600 7.33114 7.55683 7.67245 8.28190 8.33292 8.89151 9.25218 10.66722 Molecular weight = 306.02amu Principal moments of inertia in cm(-1) A = 0.011514 B = 0.007681 C = 0.006051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2431.237599 B = 3644.583358 C = 4626.541722 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.848 5.848 2 C 0.043 3.957 3 Si 0.915 3.085 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.273 1.273 7 C -0.303 4.303 8 H 0.095 0.905 9 N -0.833 5.833 10 C 0.129 3.871 11 C -0.131 4.131 12 C 0.483 3.517 13 O -0.512 6.512 14 O -0.525 6.525 15 S 2.653 3.347 16 O -0.959 6.959 17 O -0.971 6.971 18 C -0.479 4.479 19 C -0.138 4.138 20 S 0.124 5.876 21 C 0.007 3.993 22 N -0.398 5.398 23 H 0.271 0.729 24 H 0.129 0.871 25 H 0.075 0.925 26 H 0.093 0.907 27 H 0.109 0.891 28 H 0.401 0.599 29 H 0.195 0.805 30 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.694 -5.078 7.654 13.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.486 5.486 2 C -0.166 4.166 3 Si 0.741 3.259 4 H -0.195 1.195 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.438 4.438 8 H 0.112 0.888 9 N -0.665 5.665 10 C 0.002 3.998 11 C -0.171 4.171 12 C 0.325 3.675 13 O -0.399 6.399 14 O -0.337 6.337 15 S 2.742 3.258 16 O -0.948 6.948 17 O -0.960 6.960 18 C -0.690 4.690 19 C -0.280 4.280 20 S 0.376 5.624 21 C -0.295 4.295 22 N -0.111 5.111 23 H 0.082 0.918 24 H 0.146 0.854 25 H 0.093 0.907 26 H 0.111 0.889 27 H 0.127 0.873 28 H 0.258 0.742 29 H 0.212 0.788 30 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges 9.696 -5.824 6.932 13.266 hybrid contribution -0.024 1.067 0.666 1.258 sum 9.673 -4.757 7.598 13.188 Atomic orbital electron populations 1.69956 1.06080 1.27908 1.44629 1.25354 0.95109 0.99668 0.96463 0.86199 0.79394 0.81189 0.79136 1.19543 1.20824 1.19856 1.19061 0.96930 0.84882 1.42949 0.88769 1.52554 1.54536 1.18179 1.41238 1.21237 0.90593 1.07301 0.80700 1.22003 0.98271 1.05157 0.91697 1.23759 0.89381 0.71283 0.83099 1.90706 1.18781 1.45369 1.85036 1.84588 1.45590 1.86005 1.17534 1.04589 0.73021 0.74580 0.73572 1.93485 1.82543 1.84859 1.33899 1.93447 1.48399 1.68975 1.85177 1.33548 1.16863 1.10929 1.07627 1.27288 0.94685 1.02490 1.03548 1.83845 1.13826 1.43381 1.21355 1.28737 0.90204 1.05356 1.05186 1.66329 1.30252 1.08213 1.06287 0.91812 0.85358 0.90716 0.88915 0.87263 0.74169 0.78771 0.78002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -22.19 11.28 55.49 0.63 -21.56 16 2 C 0.04 1.05 4.98 -17.43 -0.09 0.97 16 3 Si 0.91 18.97 29.62 -169.99 -5.03 13.94 16 4 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 5 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 6 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 7 C -0.30 -7.38 8.88 -15.06 -0.13 -7.51 16 8 H 0.09 2.16 7.94 -52.49 -0.42 1.74 16 9 N -0.83 -19.70 2.85 -59.91 -0.17 -19.87 16 10 C 0.13 2.97 4.58 -4.04 -0.02 2.95 16 11 C -0.13 -2.50 6.11 -27.88 -0.17 -2.67 16 12 C 0.48 8.71 8.33 36.01 0.30 9.01 16 13 O -0.51 -10.73 16.74 -18.75 -0.31 -11.04 16 14 O -0.53 -7.33 13.42 -39.26 -0.53 -7.86 16 15 S 2.65 60.67 5.77 -107.50 -0.62 60.05 16 16 O -0.96 -23.55 16.89 -57.17 -0.97 -24.51 16 17 O -0.97 -24.40 16.51 -57.17 -0.94 -25.34 16 18 C -0.48 -8.96 6.81 -19.18 -0.13 -9.09 16 19 C -0.14 -2.14 10.84 29.12 0.32 -1.83 16 20 S 0.12 1.42 23.22 -107.50 -2.50 -1.07 16 21 C 0.01 0.08 12.23 51.58 0.63 0.72 16 22 N -0.40 -6.99 10.15 -14.94 -0.15 -7.14 16 23 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 24 H 0.13 3.24 5.26 -51.93 -0.27 2.97 16 25 H 0.07 1.78 6.87 -51.93 -0.36 1.42 16 26 H 0.09 1.67 7.82 -51.93 -0.41 1.26 16 27 H 0.11 1.99 8.14 -51.93 -0.42 1.57 16 28 H 0.40 3.67 9.10 45.56 0.41 4.09 16 29 H 0.20 2.70 8.04 -52.49 -0.42 2.28 16 30 H 0.20 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 300.08 15.07 4.52 4.52 Total: -1.00 -33.23 300.08 -6.81 -40.04 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -1.44 Total: 7.31 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: 0.71 Total: -7.45 kcal Atomic # 7 Polarization: -48.88 SS G_CDS: 0.30 Total: -48.57 kcal Atomic # 8 Polarization: -66.01 SS G_CDS: -2.75 Total: -68.76 kcal Atomic # 14 Polarization: 18.97 SS G_CDS: -5.03 Total: 13.94 kcal Atomic # 16 Polarization: 62.09 SS G_CDS: -3.12 Total: 58.98 kcal Total LS contribution 4.52 Total: 4.52 kcal Total: -33.23 -6.81 -40.04 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601073089.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.670 kcal (2) G-P(sol) polarization free energy of solvation -33.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds