Wall clock time and date at job start Tue Mar 31 2020 08:38:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50706 * 109.47238 * 2 1 4 4 C 1.38123 * 120.39866 * 124.71996 * 3 2 1 5 5 C 1.39619 * 118.33050 * 179.76834 * 4 3 2 6 6 N 1.38543 * 120.53300 * 180.26764 * 5 4 3 7 7 C 1.46500 * 119.99608 * 5.24497 * 6 5 4 8 8 C 1.50693 * 109.46865 * 90.00739 * 7 6 5 9 9 H 1.07999 * 120.00394 * 359.97438 * 8 7 6 10 10 C 1.37878 * 120.00084 * 180.02562 * 8 7 6 11 11 N 1.31523 * 120.00058 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00273 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47163 * 359.97438 * 12 10 8 14 14 H 1.48506 * 109.47099 * 119.99699 * 12 10 8 15 15 H 1.48503 * 109.46820 * 239.99526 * 12 10 8 16 16 C 1.46498 * 120.00030 * 185.25484 * 6 5 4 17 17 C 1.52999 * 109.47453 * 89.99608 * 16 6 5 18 18 C 1.52995 * 109.46841 * 179.97438 * 17 16 6 19 19 C 1.53000 * 109.47515 * 65.00060 * 18 17 16 20 20 C 1.53011 * 109.46912 * 184.99629 * 18 17 16 21 21 N 1.33000 * 118.93735 * 0.50829 * 5 4 3 22 22 C 1.31746 * 120.68564 * 359.75271 * 21 5 4 23 23 C 1.50703 * 119.08337 * 179.97438 * 22 21 5 24 24 C 1.53000 * 109.47224 * 269.98028 * 23 22 21 25 25 N 1.31792 * 121.83488 * 359.97438 * 22 21 5 26 26 H 1.09004 * 109.47261 * 59.99705 * 1 2 3 27 27 H 1.09002 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99686 * 1 2 3 29 29 H 1.09001 * 109.46832 * 240.00314 * 2 1 3 30 30 H 1.09000 * 109.47611 * 120.00611 * 2 1 3 31 31 H 1.07998 * 120.83242 * 0.02562 * 4 3 2 32 32 H 1.09003 * 109.47128 * 210.00707 * 7 6 5 33 33 H 1.09005 * 109.47364 * 330.00206 * 7 6 5 34 34 H 0.96995 * 120.00232 * 180.02562 * 11 10 8 35 35 H 1.09007 * 109.46575 * 209.99629 * 16 6 5 36 36 H 1.08994 * 109.47029 * 329.99174 * 16 6 5 37 37 H 1.08997 * 109.46729 * 299.99593 * 17 16 6 38 38 H 1.08994 * 109.47357 * 59.99767 * 17 16 6 39 39 H 1.08996 * 109.47473 * 304.99702 * 18 17 16 40 40 H 1.09001 * 109.47707 * 179.97438 * 19 18 17 41 41 H 1.09000 * 109.47171 * 299.99858 * 19 18 17 42 42 H 1.09005 * 109.47239 * 59.99507 * 19 18 17 43 43 H 1.09002 * 109.46582 * 60.00375 * 20 18 17 44 44 H 1.09000 * 109.47039 * 179.97438 * 20 18 17 45 45 H 1.08996 * 109.47112 * 300.00295 * 20 18 17 46 46 H 1.08998 * 109.47029 * 29.97960 * 23 22 21 47 47 H 1.08992 * 109.47153 * 149.97987 * 23 22 21 48 48 H 1.08994 * 109.47245 * 180.02562 * 24 23 22 49 49 H 1.09002 * 109.47390 * 300.00286 * 24 23 22 50 50 H 1.08999 * 109.47359 * 59.99653 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4209 0.0000 4 6 2.9051 1.8536 0.9792 5 6 3.3470 3.1773 0.9350 6 7 4.2271 3.6578 1.8910 7 6 4.7910 2.7476 2.8908 8 6 6.0761 2.1602 2.3672 9 1 6.4366 2.4369 1.3874 10 6 6.7913 1.2687 3.1384 11 7 6.3521 0.9313 4.3313 12 14 8.3840 0.5400 2.4890 13 1 8.6564 1.0764 1.1313 14 1 9.5010 0.9022 3.3982 15 1 8.2605 -0.9383 2.4212 16 6 4.5935 5.0762 1.9022 17 6 3.6127 5.8495 2.7859 18 6 3.9959 7.3306 2.7980 19 6 3.8224 7.9139 1.3942 20 6 3.0932 8.0829 3.7780 21 7 2.9058 3.9709 -0.0369 22 6 2.0690 3.5171 -0.9476 23 6 1.5917 4.4479 -2.0325 24 6 0.3158 5.1558 -1.5722 25 7 1.6377 2.2718 -0.9365 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8899 31 1 3.2405 1.1837 1.7571 32 1 4.9909 3.2971 3.8108 33 1 4.0810 1.9457 3.0937 34 1 6.8554 0.3044 4.8741 35 1 5.6035 5.1873 2.2969 36 1 4.5551 5.4694 0.8864 37 1 2.6028 5.7383 2.3912 38 1 3.6511 5.4563 3.8017 39 1 5.0355 7.4344 3.1087 40 1 4.0950 8.9692 1.4029 41 1 4.4654 7.3780 0.6961 42 1 2.7827 7.8101 1.0836 43 1 3.2169 7.6674 4.7781 44 1 3.3665 9.1381 3.7870 45 1 2.0536 7.9791 3.4673 46 1 2.3633 5.1890 -2.2409 47 1 1.3837 3.8758 -2.9366 48 1 -0.0297 5.8287 -2.3569 49 1 -0.4559 4.4148 -1.3637 50 1 0.5237 5.7279 -0.6680 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001642483992.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:38:32 Heat of formation + Delta-G solvation = 11.480531 kcal Electronic energy + Delta-G solvation = -26050.249797 eV Core-core repulsion = 22690.179896 eV Total energy + Delta-G solvation = -3360.069901 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.216 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.39852 -37.47470 -35.63682 -34.91379 -33.17429 -32.38276 -31.06484 -30.03873 -28.64198 -27.03221 -26.78714 -24.58101 -24.39176 -23.10806 -22.49777 -20.67937 -19.92806 -19.62646 -17.04138 -16.63820 -16.24397 -15.09901 -14.84174 -14.73458 -14.54448 -14.38705 -14.09232 -13.88161 -13.73064 -13.43351 -13.32325 -13.03273 -12.80579 -12.40950 -12.21150 -12.12079 -11.93750 -11.77528 -11.52462 -11.35663 -11.22897 -11.10316 -11.00807 -10.93189 -10.85734 -10.77357 -10.71795 -10.48172 -10.31424 -10.18616 -10.06230 -9.75511 -9.53430 -8.86524 -8.59393 -8.46183 -7.02443 -6.17741 -4.27032 1.74180 2.11502 3.20296 3.28801 3.33500 3.71912 4.31424 4.46026 4.50007 4.74548 5.03897 5.11287 5.13340 5.13982 5.24446 5.33433 5.46676 5.48778 5.57142 5.58840 5.62092 5.71887 5.78375 5.83530 5.89861 5.97013 5.97928 6.01106 6.01526 6.07078 6.11198 6.13713 6.19407 6.23072 6.28162 6.33295 6.37072 6.40420 6.41116 6.52272 6.60894 6.70678 6.92096 7.11065 7.15547 7.54117 7.75661 8.03429 8.20170 8.24900 8.79184 9.01671 9.40452 10.86566 Molecular weight = 305.22amu Principal moments of inertia in cm(-1) A = 0.007974 B = 0.006108 C = 0.003920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3510.633693 B = 4583.265049 C = 7141.566318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.070 4.070 3 C 0.189 3.811 4 C -0.281 4.281 5 C 0.450 3.550 6 N -0.573 5.573 7 C 0.249 3.751 8 C -0.534 4.534 9 H 0.060 0.940 10 C 0.065 3.935 11 N -0.892 5.892 12 Si 0.897 3.103 13 H -0.273 1.273 14 H -0.282 1.282 15 H -0.282 1.282 16 C 0.127 3.873 17 C -0.125 4.125 18 C -0.093 4.093 19 C -0.144 4.144 20 C -0.144 4.144 21 N -0.588 5.588 22 C 0.350 3.650 23 C -0.048 4.048 24 C -0.139 4.139 25 N -0.575 5.575 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.049 0.951 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.145 0.855 32 H 0.038 0.962 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.060 0.940 39 H 0.069 0.931 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.052 0.948 44 H 0.050 0.950 45 H 0.051 0.949 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.059 0.941 49 H 0.055 0.945 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.603 7.682 -6.258 13.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.108 4.108 3 C 0.049 3.951 4 C -0.309 4.309 5 C 0.206 3.794 6 N -0.280 5.280 7 C 0.130 3.870 8 C -0.573 4.573 9 H 0.078 0.922 10 C -0.138 4.138 11 N -0.531 5.531 12 Si 0.724 3.276 13 H -0.197 1.197 14 H -0.208 1.208 15 H -0.208 1.208 16 C 0.003 3.997 17 C -0.164 4.164 18 C -0.112 4.112 19 C -0.202 4.202 20 C -0.202 4.202 21 N -0.314 5.314 22 C 0.080 3.920 23 C -0.087 4.087 24 C -0.197 4.197 25 N -0.296 5.296 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.098 0.902 30 H 0.098 0.902 31 H 0.163 0.837 32 H 0.056 0.944 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.087 0.913 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.072 0.928 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.100 0.900 48 H 0.078 0.922 49 H 0.074 0.926 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.677 8.192 -6.571 14.280 hybrid contribution 1.418 -1.095 0.604 1.891 sum -8.259 7.097 -5.967 12.417 Atomic orbital electron populations 1.21617 0.94423 1.01139 1.02410 1.20428 0.96564 0.90723 1.03099 1.21129 0.90138 0.95312 0.88531 1.22138 1.06044 0.97581 1.05161 1.18559 0.86045 0.88531 0.86297 1.47121 1.42781 1.08730 1.29374 1.19433 0.93473 0.88274 0.85826 1.21534 1.06816 1.25983 1.02938 0.92186 1.24931 0.98041 0.96101 0.94726 1.69932 1.39256 1.34025 1.09879 0.86454 0.83050 0.78996 0.79079 1.19739 1.20802 1.20759 1.21385 0.97501 0.80322 1.00508 1.22001 1.00041 0.93904 1.00499 1.21043 0.99788 0.94807 0.95610 1.21850 1.01982 0.99770 0.96569 1.21820 0.99649 0.99564 0.99132 1.67711 1.18611 1.38888 1.06208 1.22552 0.88179 0.89136 0.92178 1.20183 0.97955 0.96148 0.94438 1.21634 0.96632 1.00065 1.01379 1.67870 1.30153 1.03956 1.27657 0.91731 0.92731 0.93138 0.90199 0.90238 0.83695 0.94369 0.94445 0.92561 0.90959 0.90267 0.92213 0.92135 0.91277 0.93430 0.92194 0.92823 0.92848 0.93077 0.92986 0.89999 0.89961 0.92227 0.92575 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.75 9.78 37.16 0.36 -1.39 16 2 C -0.07 -1.03 6.36 -27.88 -0.18 -1.20 16 3 C 0.19 3.46 6.20 -82.32 -0.51 2.95 16 4 C -0.28 -5.78 8.96 -39.11 -0.35 -6.13 16 5 C 0.45 9.49 7.39 -154.77 -1.14 8.34 16 6 N -0.57 -12.18 2.56 -175.03 -0.45 -12.63 16 7 C 0.25 6.04 5.03 -5.20 -0.03 6.02 16 8 C -0.53 -14.22 9.39 -34.44 -0.32 -14.54 16 9 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 10 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 11 N -0.89 -24.81 13.29 55.43 0.74 -24.07 16 12 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 13 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 14 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 15 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 16 C 0.13 2.31 5.24 -4.04 -0.02 2.29 16 17 C -0.13 -1.98 5.01 -26.73 -0.13 -2.11 16 18 C -0.09 -1.20 2.92 -90.62 -0.26 -1.47 16 19 C -0.14 -1.74 8.95 37.16 0.33 -1.40 16 20 C -0.14 -1.64 9.19 37.16 0.34 -1.30 16 21 N -0.59 -11.44 9.13 -9.96 -0.09 -11.53 16 22 C 0.35 6.23 6.90 -157.24 -1.08 5.14 16 23 C -0.05 -0.65 6.37 -27.88 -0.18 -0.83 16 24 C -0.14 -1.63 9.89 37.16 0.37 -1.26 16 25 N -0.57 -10.43 9.93 -7.07 -0.07 -10.50 16 26 H 0.06 0.85 7.98 -51.93 -0.41 0.43 16 27 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.08 1.12 7.93 -51.93 -0.41 0.71 16 31 H 0.15 3.12 6.10 -52.49 -0.32 2.80 16 32 H 0.04 0.97 8.07 -51.93 -0.42 0.55 16 33 H 0.04 0.95 6.04 -51.93 -0.31 0.64 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.07 1.35 8.07 -51.93 -0.42 0.93 16 36 H 0.08 1.43 5.76 -51.93 -0.30 1.13 16 37 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 46 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 47 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 48 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 401.70 15.07 6.05 6.05 Total: -1.00 -28.41 401.70 -10.99 -39.40 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: -9.25 Total: 2.60 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: -2.90 Total: -5.25 kcal Atomic # 7 Polarization: -58.86 SS G_CDS: 0.13 Total: -58.74 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -28.41 -10.99 -39.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001642483992.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.880 kcal (2) G-P(sol) polarization free energy of solvation -28.408 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.992 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.400 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds