Wall clock time and date at job start Tue Mar 31 2020 08:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42905 * 109.47007 * 2 1 4 4 C 1.35898 * 117.00107 * 180.02562 * 3 2 1 5 5 C 1.38755 * 120.05239 * 0.02562 * 4 3 2 6 6 C 1.38125 * 119.94291 * 180.02562 * 5 4 3 7 7 C 1.38292 * 120.05421 * 359.97316 * 6 5 4 8 8 C 1.50702 * 119.94376 * 180.02562 * 7 6 5 9 9 N 1.46895 * 109.47033 * 258.70465 * 8 7 6 10 10 C 1.46899 * 111.00311 * 66.63377 * 9 8 7 11 11 C 1.50695 * 109.47223 * 189.99785 * 10 9 8 12 12 H 1.08004 * 119.99942 * 0.02562 * 11 10 9 13 13 C 1.37876 * 120.00048 * 179.97438 * 11 10 9 14 14 N 1.31516 * 119.99993 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 120.00009 * 180.02562 * 13 11 10 16 16 H 1.48498 * 109.47294 * 90.00138 * 15 13 11 17 17 H 1.48506 * 109.47189 * 210.00454 * 15 13 11 18 18 H 1.48504 * 109.47138 * 330.00098 * 15 13 11 19 19 C 1.46901 * 110.99775 * 190.58782 * 9 8 7 20 20 C 1.52992 * 109.47512 * 76.55468 * 19 9 8 21 21 C 1.53000 * 109.47396 * 65.71357 * 20 19 9 22 22 C 1.52997 * 109.47566 * 185.71481 * 20 19 9 23 23 C 1.38238 * 120.11049 * 0.02562 * 7 6 5 24 24 C 1.50703 * 119.96955 * 180.02562 * 23 7 6 25 25 C 1.38162 * 120.05930 * 359.76817 * 23 7 6 26 26 H 1.09001 * 109.46894 * 180.02562 * 1 2 3 27 27 H 1.09003 * 109.46821 * 299.99578 * 1 2 3 28 28 H 1.09000 * 109.47029 * 59.99906 * 1 2 3 29 29 H 1.09004 * 109.47442 * 119.99803 * 2 1 3 30 30 H 1.09003 * 109.46821 * 240.00422 * 2 1 3 31 31 H 1.07994 * 120.03125 * 0.02562 * 5 4 3 32 32 H 1.07997 * 119.97215 * 179.97438 * 6 5 4 33 33 H 1.09005 * 109.46870 * 18.70648 * 8 7 6 34 34 H 1.09005 * 109.47080 * 138.69931 * 8 7 6 35 35 H 1.09007 * 109.46856 * 309.99701 * 10 9 8 36 36 H 1.08999 * 109.47615 * 69.99602 * 10 9 8 37 37 H 0.96997 * 119.99805 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.47087 * 196.55621 * 19 9 8 39 39 H 1.09004 * 109.47265 * 316.55063 * 19 9 8 40 40 H 1.09004 * 109.47224 * 305.71607 * 20 19 9 41 41 H 1.08999 * 109.47181 * 304.10661 * 21 20 19 42 42 H 1.09007 * 109.46662 * 64.09891 * 21 20 19 43 43 H 1.08996 * 109.47817 * 184.09986 * 21 20 19 44 44 H 1.09007 * 109.46972 * 64.76721 * 22 20 19 45 45 H 1.09000 * 109.47491 * 184.76567 * 22 20 19 46 46 H 1.09003 * 109.47099 * 304.77148 * 22 20 19 47 47 H 1.08998 * 109.47307 * 91.63256 * 24 23 7 48 48 H 1.09005 * 109.46828 * 211.62989 * 24 23 7 49 49 H 1.09000 * 109.47166 * 331.62656 * 24 23 7 50 50 H 1.08004 * 120.03294 * 180.25301 * 25 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3536 1.5254 -0.0005 5 6 4.1999 0.4259 -0.0016 6 6 5.5689 0.6095 -0.0016 7 6 6.0962 1.8880 -0.0011 8 6 7.5902 2.0854 -0.0017 9 7 8.0407 2.4178 1.3564 10 6 7.8511 1.2807 2.2670 11 6 8.0891 1.7285 3.6860 12 1 8.3543 2.7552 3.8910 13 6 7.9674 0.8278 4.7228 14 7 7.6440 -0.4223 4.4732 15 14 8.2617 1.3830 6.4819 16 1 6.9838 1.8561 7.0720 17 1 8.7839 0.2444 7.2796 18 1 9.2517 2.4899 6.4925 19 6 9.4411 2.8614 1.3526 20 6 9.5195 4.2986 0.8340 21 6 8.8170 5.2353 1.8189 22 6 10.9861 4.7116 0.6952 23 6 5.2551 2.9850 -0.0001 24 6 5.8331 4.3768 -0.0002 25 6 3.8850 2.8067 -0.0044 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8933 -0.5138 -0.8901 31 1 3.7886 -0.5727 -0.0024 32 1 6.2280 -0.2460 -0.0020 33 1 8.0778 1.1682 -0.3321 34 1 7.8489 2.8989 -0.6797 35 1 6.8327 0.9041 2.1708 36 1 8.5566 0.4898 2.0124 37 1 7.5587 -1.0561 5.2025 38 1 9.8384 2.8189 2.3668 39 1 10.0272 2.2090 0.7053 40 1 9.0308 4.3612 -0.1384 41 1 7.7922 4.8976 1.9736 42 1 9.3494 5.2279 2.7700 43 1 8.8089 6.2476 1.4149 44 1 11.4653 4.0990 -0.0687 45 1 11.0424 5.7613 0.4071 46 1 11.4956 4.5684 1.6481 47 1 5.9446 4.7239 -1.0274 48 1 5.1648 5.0478 0.5396 49 1 6.8080 4.3654 0.4874 50 1 3.2283 3.6641 -0.0077 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001658658749.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:28:54 Heat of formation + Delta-G solvation = -32.127343 kcal Electronic energy + Delta-G solvation = -26104.316492 eV Core-core repulsion = 22710.062860 eV Total energy + Delta-G solvation = -3394.253631 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 305.210 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.96498 -38.27554 -36.77261 -34.05410 -32.60283 -32.10933 -31.79767 -29.90515 -27.32539 -26.98515 -26.48088 -25.34511 -23.73456 -23.41883 -21.61946 -20.92301 -19.92484 -19.07248 -17.55139 -16.40985 -15.98691 -15.83256 -15.49180 -14.67652 -14.58617 -14.28297 -14.08439 -13.75268 -13.39420 -13.27704 -12.90248 -12.85984 -12.79275 -12.64826 -12.36402 -12.18959 -11.86198 -11.79749 -11.60893 -11.47994 -11.41065 -11.35496 -11.03259 -10.79221 -10.65096 -10.56736 -10.49313 -10.36255 -10.32515 -10.17421 -9.91732 -9.62704 -9.11376 -8.40282 -8.30109 -7.65042 -7.15374 -5.97874 -3.97580 1.78036 1.86635 3.34252 3.37459 3.40304 3.43252 4.11792 4.47148 4.89195 4.93383 5.02179 5.18348 5.23890 5.25758 5.35337 5.38236 5.40525 5.45621 5.50870 5.63372 5.70206 5.72172 5.78813 5.80037 5.92733 5.96606 5.99001 6.03189 6.07783 6.16554 6.20033 6.29426 6.31183 6.36122 6.44813 6.52816 6.60879 6.62560 6.71835 6.83315 6.92696 7.03503 7.17981 7.21335 7.40682 7.42170 7.73155 7.86357 8.17547 8.28271 8.61265 9.10080 9.65761 11.13093 Molecular weight = 305.21amu Principal moments of inertia in cm(-1) A = 0.010327 B = 0.004908 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2710.577642 B = 5703.295260 C = 7547.202200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.055 3.945 3 O -0.321 6.321 4 C 0.122 3.878 5 C -0.213 4.213 6 C -0.062 4.062 7 C -0.096 4.096 8 C 0.095 3.905 9 N -0.526 5.526 10 C 0.192 3.808 11 C -0.501 4.501 12 H 0.063 0.937 13 C 0.056 3.944 14 N -0.899 5.899 15 Si 0.893 3.107 16 H -0.281 1.281 17 H -0.289 1.289 18 H -0.274 1.274 19 C 0.064 3.936 20 C -0.091 4.091 21 C -0.139 4.139 22 C -0.145 4.145 23 C -0.023 4.023 24 C -0.126 4.126 25 C -0.159 4.159 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.027 0.973 34 H 0.069 0.931 35 H 0.037 0.963 36 H -0.014 1.014 37 H 0.259 0.741 38 H 0.087 0.913 39 H 0.017 0.983 40 H 0.060 0.940 41 H 0.075 0.925 42 H 0.048 0.952 43 H 0.036 0.964 44 H 0.047 0.953 45 H 0.048 0.952 46 H 0.053 0.947 47 H 0.060 0.940 48 H 0.060 0.940 49 H 0.099 0.901 50 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.738 4.816 -11.695 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.021 4.021 3 O -0.236 6.236 4 C 0.078 3.922 5 C -0.232 4.232 6 C -0.080 4.080 7 C -0.097 4.097 8 C -0.033 4.033 9 N -0.250 5.250 10 C 0.067 3.933 11 C -0.540 4.540 12 H 0.081 0.919 13 C -0.145 4.145 14 N -0.539 5.539 15 Si 0.721 3.279 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.199 1.199 19 C -0.064 4.064 20 C -0.110 4.110 21 C -0.196 4.196 22 C -0.203 4.203 23 C -0.024 4.024 24 C -0.182 4.182 25 C -0.178 4.178 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.138 0.862 32 H 0.138 0.862 33 H 0.045 0.955 34 H 0.087 0.913 35 H 0.055 0.945 36 H 0.004 0.996 37 H 0.069 0.931 38 H 0.105 0.895 39 H 0.035 0.965 40 H 0.079 0.921 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.055 0.945 44 H 0.066 0.934 45 H 0.067 0.933 46 H 0.073 0.927 47 H 0.079 0.921 48 H 0.079 0.921 49 H 0.118 0.882 50 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.203 5.163 -11.420 13.984 hybrid contribution 0.614 -0.994 0.858 1.450 sum -5.589 4.169 -10.562 12.656 Atomic orbital electron populations 1.21762 0.93139 1.02566 1.03286 1.22712 0.95444 0.82505 1.01419 1.86006 1.19617 1.28787 1.89173 1.18867 0.81681 0.94199 0.97498 1.21064 0.94330 0.97533 1.10268 1.20834 0.94113 0.96903 0.96176 1.19554 0.95540 0.92240 1.02384 1.20957 0.90674 0.98806 0.92874 1.62108 1.18626 1.38850 1.05412 1.19753 0.96851 0.86171 0.90500 1.21165 1.46029 0.96119 0.90704 0.91865 1.24952 0.95649 0.94884 0.99035 1.69958 1.48923 1.03058 1.31924 0.86580 0.78424 0.78072 0.84823 1.20745 1.21458 1.19876 1.22094 0.89544 0.93157 1.01651 1.21132 0.94827 0.96124 0.98962 1.21779 1.02433 0.96889 0.98507 1.21820 0.96801 1.00267 1.01422 1.19432 0.91543 0.95717 0.95667 1.21040 1.03586 0.92144 1.01432 1.20169 0.94590 0.94369 1.08679 0.90621 0.91586 0.91765 0.91987 0.92339 0.86167 0.86166 0.95487 0.91252 0.94452 0.99641 0.93123 0.89485 0.96464 0.92130 0.90618 0.93245 0.94494 0.93404 0.93251 0.92739 0.92124 0.92107 0.88214 0.85939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 10.28 37.16 0.38 -0.99 16 2 C 0.05 0.65 5.46 37.16 0.20 0.85 16 3 O -0.32 -4.94 10.14 -19.42 -0.20 -5.14 16 4 C 0.12 2.06 6.69 -39.22 -0.26 1.80 16 5 C -0.21 -3.58 9.04 -39.43 -0.36 -3.94 16 6 C -0.06 -1.11 8.56 -39.60 -0.34 -1.45 16 7 C -0.10 -1.75 4.58 -104.60 -0.48 -2.23 16 8 C 0.09 1.69 4.03 -4.98 -0.02 1.67 16 9 N -0.53 -10.74 3.08 -237.52 -0.73 -11.47 16 10 C 0.19 4.90 4.57 -4.98 -0.02 4.87 16 11 C -0.50 -13.86 8.22 -34.44 -0.28 -14.15 16 12 H 0.06 1.73 7.32 -52.48 -0.38 1.34 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 14 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 15 Si 0.89 21.80 29.54 -169.99 -5.02 16.77 16 16 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 19 C 0.06 1.19 4.20 -3.83 -0.02 1.17 16 20 C -0.09 -1.37 2.56 -90.63 -0.23 -1.60 16 21 C -0.14 -2.13 8.66 37.16 0.32 -1.81 16 22 C -0.15 -1.88 9.19 37.16 0.34 -1.54 16 23 C -0.02 -0.39 5.88 -104.65 -0.62 -1.01 16 24 C -0.13 -1.83 9.31 36.01 0.34 -1.50 16 25 C -0.16 -2.66 9.65 -39.43 -0.38 -3.04 16 26 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 30 H 0.06 0.62 7.66 -51.93 -0.40 0.23 16 31 H 0.12 1.76 6.30 -52.49 -0.33 1.43 16 32 H 0.12 2.12 8.02 -52.49 -0.42 1.70 16 33 H 0.03 0.49 7.96 -51.93 -0.41 0.08 16 34 H 0.07 1.09 5.78 -51.93 -0.30 0.79 16 35 H 0.04 1.03 6.20 -51.92 -0.32 0.71 16 36 H -0.01 -0.39 8.12 -51.93 -0.42 -0.81 16 37 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 38 H 0.09 1.83 6.58 -51.93 -0.34 1.49 16 39 H 0.02 0.31 7.99 -51.93 -0.41 -0.10 16 40 H 0.06 0.87 6.45 -51.93 -0.34 0.53 16 41 H 0.07 1.30 5.98 -51.93 -0.31 0.99 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.05 0.58 8.14 -51.92 -0.42 0.16 16 45 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 48 H 0.06 0.83 8.10 -51.93 -0.42 0.40 16 49 H 0.10 1.56 3.15 -51.93 -0.16 1.39 16 50 H 0.12 1.82 8.06 -52.48 -0.42 1.40 16 LS Contribution 386.62 15.07 5.83 5.83 Total: -1.00 -30.21 386.62 -9.64 -39.85 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -8.74 Total: 1.54 kcal Atomic # 6 Polarization: -19.88 SS G_CDS: -1.52 Total: -21.40 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.01 Total: -37.45 kcal Atomic # 8 Polarization: -4.94 SS G_CDS: -0.20 Total: -5.14 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.21 -9.64 -39.85 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001658658749.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.722 kcal (2) G-P(sol) polarization free energy of solvation -30.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.849 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds