Wall clock time and date at job start Tue Mar 31 2020 08:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86797 * 119.99888 * 2 1 4 4 H 1.48507 * 109.47623 * 270.00517 * 3 2 1 5 5 H 1.48505 * 109.47379 * 30.00214 * 3 2 1 6 6 H 1.48500 * 109.47270 * 150.00127 * 3 2 1 7 7 C 1.37880 * 120.00600 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00357 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99649 * 359.97438 * 7 2 1 10 10 S 1.81394 * 109.47099 * 180.02562 * 9 7 2 11 11 O 1.42096 * 108.57799 * 65.51415 * 10 9 7 12 12 O 1.42098 * 108.57941 * 294.48620 * 10 9 7 13 13 C 1.81397 * 101.92120 * 180.02562 * 10 9 7 14 14 C 1.50703 * 109.47495 * 179.97438 * 13 10 9 15 15 C 1.38262 * 119.94360 * 89.99437 * 14 13 10 16 16 C 1.38145 * 120.05938 * 180.02562 * 15 14 13 17 17 C 1.38731 * 119.93835 * 0.02562 * 16 15 14 18 18 O 1.35905 * 120.05264 * 180.02562 * 17 16 15 19 19 C 1.42905 * 116.99842 * 180.02562 * 18 17 16 20 20 F 1.39897 * 109.46886 * 299.99632 * 19 18 17 21 21 F 1.39898 * 109.47456 * 59.99851 * 19 18 17 22 22 C 1.38729 * 119.89194 * 0.27526 * 17 16 15 23 23 C 1.38146 * 119.94070 * 359.42621 * 22 17 16 24 24 H 0.96993 * 120.00403 * 359.97438 * 1 2 3 25 25 H 1.09004 * 109.47044 * 60.00388 * 9 7 2 26 26 H 1.08998 * 109.47096 * 300.00417 * 9 7 2 27 27 H 1.09002 * 109.47140 * 59.99788 * 13 10 9 28 28 H 1.09006 * 109.47367 * 300.00086 * 13 10 9 29 29 H 1.08008 * 119.97547 * 359.97438 * 15 14 13 30 30 H 1.07990 * 120.03151 * 179.97438 * 16 15 14 31 31 H 1.09001 * 109.47103 * 180.02562 * 19 18 17 32 32 H 1.08000 * 120.03286 * 179.71870 * 22 17 16 33 33 H 1.08005 * 119.97194 * 180.27359 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0047 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2512 -2.4992 -0.0005 10 16 2.4300 -3.8779 -0.0005 11 8 3.1485 -3.8591 1.2252 12 8 3.1485 -3.8592 -1.2263 13 6 1.3245 -5.3161 -0.0013 14 6 2.1448 -6.5803 -0.0021 15 6 2.5206 -7.1598 1.1957 16 6 3.2730 -8.3184 1.1978 17 6 3.6520 -8.9001 -0.0033 18 8 4.3917 -10.0401 -0.0039 19 6 4.7462 -10.5828 -1.2775 20 9 3.5840 -10.8884 -1.9939 21 9 5.5005 -9.6449 -1.9906 22 6 3.2790 -8.3132 -1.2037 23 6 2.5213 -7.1580 -1.2004 24 1 -0.4850 0.8400 0.0004 25 1 0.6242 -2.5568 -0.8904 26 1 0.6248 -2.5571 0.8896 27 1 0.6960 -5.2907 -0.8915 28 1 0.6954 -5.2913 0.8885 29 1 2.2264 -6.7059 2.1306 30 1 3.5666 -8.7705 2.1336 31 1 5.3338 -11.4897 -1.1352 32 1 3.5766 -8.7616 -2.1401 33 1 2.2269 -6.7032 -2.1347 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000905265708.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:33:09 Heat of formation + Delta-G solvation = -222.544900 kcal Electronic energy + Delta-G solvation = -22474.797353 eV Core-core repulsion = 18455.591993 eV Total energy + Delta-G solvation = -4019.205361 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 306.057 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.32785 -48.33065 -41.12400 -38.81825 -37.75589 -36.79551 -35.38164 -33.48953 -32.18268 -31.04012 -28.65494 -26.61763 -25.42171 -24.08548 -22.73086 -20.08312 -19.70684 -19.18109 -18.91774 -18.89772 -17.57130 -17.26379 -17.20240 -16.86513 -16.51592 -16.01859 -15.83126 -15.67232 -15.02495 -14.97447 -14.66535 -14.61580 -14.46340 -14.16403 -14.00054 -13.67883 -13.43885 -13.37812 -13.26967 -12.92260 -12.84571 -12.71930 -12.67125 -12.51275 -11.99977 -11.89114 -11.70828 -10.94844 -10.76630 -10.15815 -9.39640 -8.40397 -6.56244 -0.83072 0.18029 0.22992 1.37828 1.38539 1.50814 1.56415 2.18959 2.31503 2.51767 2.55200 2.92003 2.93263 3.27302 3.47102 3.50321 3.67669 3.70503 3.74974 4.01817 4.18361 4.33848 4.47484 4.57318 4.79854 4.80492 4.89729 4.99525 5.10465 5.36922 5.37627 5.42460 5.76439 5.93405 6.53620 7.14110 8.71985 Molecular weight = 306.06amu Principal moments of inertia in cm(-1) A = 0.036437 B = 0.003101 C = 0.003046 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.274061 B = 9028.157360 C = 9189.912294 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.025 3.975 3 Si 0.960 3.040 4 H -0.265 1.265 5 H -0.267 1.267 6 H -0.266 1.266 7 C -0.563 4.563 8 H 0.058 0.942 9 C -0.425 4.425 10 S 2.403 3.597 11 O -0.985 6.985 12 O -0.988 6.988 13 C -0.550 4.550 14 C -0.127 4.127 15 C -0.078 4.078 16 C -0.137 4.137 17 C 0.101 3.899 18 O -0.322 6.322 19 C 0.403 3.597 20 F -0.209 7.209 21 F -0.212 7.212 22 C -0.201 4.201 23 C -0.081 4.081 24 H 0.274 0.726 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.166 0.834 28 H 0.171 0.829 29 H 0.159 0.841 30 H 0.164 0.836 31 H 0.240 0.760 32 H 0.143 0.857 33 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.985 -22.705 -0.409 23.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.178 4.178 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.191 1.191 6 H -0.191 1.191 7 C -0.602 4.602 8 H 0.076 0.924 9 C -0.558 4.558 10 S 2.593 3.407 11 O -0.982 6.982 12 O -0.986 6.986 13 C -0.679 4.679 14 C -0.129 4.129 15 C -0.097 4.097 16 C -0.155 4.155 17 C 0.057 3.943 18 O -0.240 6.240 19 C 0.314 3.686 20 F -0.191 7.191 21 F -0.194 7.194 22 C -0.220 4.220 23 C -0.100 4.100 24 H 0.083 0.917 25 H 0.104 0.896 26 H 0.106 0.894 27 H 0.184 0.816 28 H 0.189 0.811 29 H 0.176 0.824 30 H 0.182 0.818 31 H 0.256 0.744 32 H 0.161 0.839 33 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 4.822 -22.653 -0.293 23.162 hybrid contribution -0.698 1.123 -0.533 1.426 sum 4.124 -21.530 -0.825 21.937 Atomic orbital electron populations 1.69997 1.07272 1.28810 1.48473 1.25776 0.95991 1.02903 0.93107 0.85518 0.78919 0.78059 0.79249 1.19002 1.19132 1.19062 1.20767 0.92919 0.91015 1.55464 0.92376 1.27630 1.10708 1.10748 1.06683 1.08379 0.79607 0.78855 0.73819 1.93418 1.71241 1.86944 1.46621 1.93420 1.71356 1.86973 1.46830 1.29205 1.13375 1.10172 1.15184 1.19217 1.02251 0.96740 0.94700 1.21369 0.95608 0.94213 0.98514 1.20735 1.00980 0.96679 0.97117 1.19099 0.93386 0.86782 0.95011 1.86614 1.67322 1.38472 1.31544 1.24387 0.79289 0.90849 0.74068 1.93078 1.53301 1.93127 1.79586 1.93090 1.76474 1.70048 1.79806 1.21660 1.03477 0.99069 0.97746 1.21226 0.95781 0.94423 0.98562 0.91716 0.89567 0.89377 0.81611 0.81091 0.82378 0.81805 0.74401 0.83898 0.83778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.38 13.29 21.45 0.28 -51.10 16 2 C 0.03 1.39 5.46 84.66 0.46 1.86 16 3 Si 0.96 43.31 29.54 68.60 2.03 45.34 16 4 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 5 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 6 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 7 C -0.56 -31.95 9.13 25.60 0.23 -31.71 16 8 H 0.06 3.34 7.71 -2.91 -0.02 3.32 16 9 C -0.43 -20.28 5.56 71.24 0.40 -19.88 16 10 S 2.40 99.09 4.62 -56.49 -0.26 98.83 16 11 O -0.98 -45.97 18.10 -127.37 -2.31 -48.28 16 12 O -0.99 -46.90 18.10 -127.37 -2.30 -49.20 16 13 C -0.55 -15.22 5.93 71.24 0.42 -14.79 16 14 C -0.13 -3.66 5.14 -19.85 -0.10 -3.76 16 15 C -0.08 -2.02 9.69 22.25 0.22 -1.80 16 16 C -0.14 -3.20 9.99 22.37 0.22 -2.97 16 17 C 0.10 2.47 6.48 22.51 0.15 2.62 16 18 O -0.32 -6.10 10.43 -92.49 -0.96 -7.06 16 19 C 0.40 5.26 5.98 113.37 0.68 5.94 16 20 F -0.21 -3.50 15.60 44.97 0.70 -2.80 16 21 F -0.21 -3.98 15.57 44.97 0.70 -3.28 16 22 C -0.20 -5.28 8.26 22.37 0.18 -5.10 16 23 C -0.08 -2.29 9.69 22.25 0.22 -2.07 16 24 H 0.27 14.37 8.31 -92.71 -0.77 13.60 16 25 H 0.09 3.99 8.14 -2.39 -0.02 3.97 16 26 H 0.09 4.05 8.14 -2.39 -0.02 4.03 16 27 H 0.17 3.68 8.08 -2.39 -0.02 3.66 16 28 H 0.17 3.63 8.09 -2.39 -0.02 3.61 16 29 H 0.16 3.44 8.06 -2.91 -0.02 3.41 16 30 H 0.16 2.85 8.06 -2.92 -0.02 2.83 16 31 H 0.24 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.14 3.42 5.10 -2.91 -0.01 3.41 16 33 H 0.14 3.71 8.06 -2.91 -0.02 3.69 16 Total: -1.00 -78.29 313.75 2.10 -76.19 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: 1.15 Total: 13.04 kcal Atomic # 6 Polarization: -74.76 SS G_CDS: 3.08 Total: -71.68 kcal Atomic # 7 Polarization: -51.38 SS G_CDS: 0.28 Total: -51.10 kcal Atomic # 8 Polarization: -98.97 SS G_CDS: -5.57 Total: -104.55 kcal Atomic # 9 Polarization: -7.48 SS G_CDS: 1.40 Total: -6.08 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 16 Polarization: 99.09 SS G_CDS: -0.26 Total: 98.83 kcal Total: -78.29 2.10 -76.19 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000905265708.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -146.356 kcal (2) G-P(sol) polarization free energy of solvation -78.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -224.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -222.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds