Wall clock time and date at job start Tue Mar 31 2020 09:14:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47052 * 2 1 4 4 C 1.37100 * 119.99741 * 264.48514 * 3 2 1 5 5 H 1.07997 * 119.99978 * 138.94580 * 4 3 2 6 6 C 1.38951 * 120.00110 * 318.94315 * 4 3 2 7 7 N 1.31409 * 119.99947 * 341.78819 * 6 4 3 8 8 Si 1.86800 * 120.00023 * 161.78117 * 6 4 3 9 9 H 1.48505 * 109.46918 * 60.00308 * 8 6 4 10 10 H 1.48498 * 109.47004 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47126 * 300.00308 * 8 6 4 12 12 C 1.34771 * 120.00231 * 84.76045 * 3 2 1 13 13 O 1.21288 * 120.00068 * 179.72637 * 12 3 2 14 14 C 1.50707 * 119.99705 * 359.72688 * 12 3 2 15 15 C 1.50702 * 109.46927 * 180.02562 * 14 12 3 16 16 C 1.34238 * 126.49792 * 265.02407 * 15 14 12 17 17 N 1.36825 * 109.93336 * 179.97438 * 16 15 14 18 18 H 0.96995 * 125.06877 * 180.02562 * 17 16 15 19 19 C 1.37733 * 109.86609 * 359.97438 * 17 16 15 20 20 C 1.39126 * 133.49108 * 180.02562 * 19 17 16 21 21 C 1.37747 * 119.79250 * 179.31889 * 20 19 17 22 22 C 1.38929 * 120.65517 * 0.55161 * 21 20 19 23 23 Cl 1.73595 * 119.75208 * 179.63955 * 22 21 20 24 24 C 1.36719 * 120.50143 * 359.66463 * 22 21 20 25 25 C 1.39646 * 119.75330 * 359.97293 * 24 22 21 26 26 H 1.09008 * 109.46725 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.47273 * 299.99872 * 1 2 3 28 28 H 1.09001 * 109.47148 * 60.00610 * 1 2 3 29 29 H 1.09001 * 109.47596 * 240.00013 * 2 1 3 30 30 H 1.09001 * 109.47148 * 119.99389 * 2 1 3 31 31 H 0.97002 * 120.00224 * 179.97438 * 7 6 4 32 32 H 1.09003 * 109.47021 * 299.99768 * 14 12 3 33 33 H 1.08992 * 109.47109 * 60.00060 * 14 12 3 34 34 H 1.08004 * 125.03619 * 359.95505 * 16 15 14 35 35 H 1.07996 * 120.09916 * 359.97438 * 20 19 17 36 36 H 1.07998 * 119.66897 * 180.16972 * 21 20 19 37 37 H 1.07996 * 120.12501 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3544 1.9895 -1.1819 5 1 2.0819 3.0200 -1.3554 6 6 3.0456 1.2800 -2.1564 7 7 3.6854 0.1776 -1.8368 8 14 3.0650 1.8933 -3.9207 9 1 3.6699 3.2488 -3.9670 10 1 3.8654 0.9647 -4.7587 11 1 1.6748 1.9537 -4.4391 12 6 2.1425 2.0522 1.1622 13 8 2.5514 3.1940 1.1627 14 6 1.7731 1.3835 2.4614 15 6 2.0015 2.3415 3.6021 16 6 3.1009 2.4234 4.3679 17 7 2.9463 3.4113 5.3019 18 1 3.6076 3.6576 5.9673 19 6 1.7120 4.0047 5.1555 20 6 1.0596 5.0353 5.8248 21 6 -0.2005 5.4216 5.4244 22 6 -0.8333 4.7843 4.3644 23 17 -2.4254 5.2840 3.8855 24 6 -0.2120 3.7664 3.6959 25 6 1.0687 3.3644 4.0810 26 1 -0.3633 -1.0278 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8933 -0.5137 0.8900 31 1 4.1677 -0.3179 -2.5172 32 1 0.7225 1.0942 2.4352 33 1 2.3908 0.4966 2.6020 34 1 3.9776 1.8014 4.2627 35 1 1.5440 5.5379 6.6488 36 1 -0.7039 6.2236 5.9436 37 1 -0.7094 3.2755 2.8725 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000150979222.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:14:04 Heat of formation + Delta-G solvation = 17.258905 kcal Electronic energy + Delta-G solvation = -22443.484122 eV Core-core repulsion = 19019.156009 eV Total energy + Delta-G solvation = -3424.328113 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 306.088 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.14256 -38.37988 -37.28854 -35.74936 -34.87293 -32.77696 -31.89900 -30.01412 -29.34862 -28.99860 -27.03759 -24.50969 -22.86445 -22.19974 -21.72804 -20.01545 -18.52044 -17.54373 -16.68876 -16.42099 -15.83629 -15.68566 -14.93356 -14.47337 -14.28723 -14.04285 -13.98495 -13.64856 -12.89978 -12.74657 -12.65954 -12.52547 -12.33235 -12.19562 -11.72875 -11.66082 -11.17102 -11.01084 -10.98928 -10.91624 -10.72707 -10.55707 -10.32873 -10.25820 -10.03604 -9.48091 -8.84484 -8.30227 -8.00041 -7.44240 -7.32868 -6.25582 -3.93180 1.18693 1.56160 2.34194 2.87894 3.24235 3.25743 3.28718 3.33189 3.90102 4.04485 4.24130 4.75896 4.93128 4.99873 5.12021 5.14283 5.32625 5.42739 5.61718 5.71527 5.82886 5.90082 5.97240 6.00106 6.11409 6.16711 6.27914 6.37928 6.44160 6.53468 6.58978 6.71760 6.90882 6.96626 7.20280 7.27618 7.64571 7.65691 8.38429 8.61835 9.29656 9.49240 10.13720 10.79585 Molecular weight = 306.09amu Principal moments of inertia in cm(-1) A = 0.016455 B = 0.004102 C = 0.003715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.158830 B = 6824.372129 C = 7534.390173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.104 3.896 3 N -0.446 5.446 4 C -0.305 4.305 5 H 0.085 0.915 6 C 0.038 3.962 7 N -0.875 5.875 8 Si 0.916 3.084 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.466 3.534 13 O -0.570 6.570 14 C -0.069 4.069 15 C -0.122 4.122 16 C 0.054 3.946 17 N -0.594 5.594 18 H 0.414 0.586 19 C 0.098 3.902 20 C -0.120 4.120 21 C -0.097 4.097 22 C -0.064 4.064 23 Cl -0.084 7.084 24 C -0.048 4.048 25 C -0.079 4.079 26 H 0.049 0.951 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.102 0.898 30 H 0.047 0.953 31 H 0.266 0.734 32 H 0.085 0.915 33 H 0.088 0.912 34 H 0.171 0.829 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.562 1.818 14.662 15.787 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.021 4.021 3 N -0.167 5.167 4 C -0.433 4.433 5 H 0.103 0.897 6 C -0.166 4.166 7 N -0.513 5.513 8 Si 0.742 3.258 9 H -0.198 1.198 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.254 3.746 13 O -0.452 6.452 14 C -0.110 4.110 15 C -0.128 4.128 16 C -0.071 4.071 17 N -0.196 5.196 18 H 0.251 0.749 19 C -0.010 4.010 20 C -0.141 4.141 21 C -0.117 4.117 22 C -0.092 4.092 23 Cl -0.055 7.055 24 C -0.067 4.067 25 C -0.084 4.084 26 H 0.068 0.932 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.120 0.880 30 H 0.066 0.934 31 H 0.076 0.924 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.188 0.812 35 H 0.143 0.857 36 H 0.149 0.851 37 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -5.256 2.278 14.567 15.653 hybrid contribution 0.329 0.256 -0.724 0.836 sum -4.926 2.534 13.843 14.910 Atomic orbital electron populations 1.22237 0.98351 1.00293 1.01550 1.21438 0.91520 0.85764 1.03336 1.43447 1.56641 1.11762 1.04804 1.19308 1.34383 0.98417 0.91182 0.89706 1.25386 0.94157 0.96616 1.00408 1.69915 1.29778 1.17590 1.33990 0.86177 0.78335 0.78786 0.82456 1.19832 1.21058 1.19931 1.20324 0.81886 0.87928 0.84508 1.90534 1.49269 1.18731 1.86709 1.20107 1.02681 0.96828 0.91367 1.19797 0.93955 1.00011 0.99083 1.21569 0.99550 0.93870 0.92105 1.41623 1.14636 1.31807 1.31579 0.74930 1.18254 0.86986 0.97341 0.98394 1.19840 0.95096 0.97595 1.01614 1.20538 0.94468 1.00158 0.96514 1.20151 0.88179 1.00586 1.00249 1.98336 1.24502 1.90985 1.91718 1.20123 0.93171 0.95153 0.98286 1.18875 0.94248 0.98388 0.96880 0.93168 0.93819 0.92469 0.87992 0.93410 0.92379 0.89654 0.89347 0.81212 0.85682 0.85108 0.85190 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 10.15 37.16 0.38 -2.56 16 2 C 0.10 2.20 5.41 -4.04 -0.02 2.18 16 3 N -0.45 -11.20 2.51 -114.81 -0.29 -11.49 16 4 C -0.30 -8.49 8.84 -14.93 -0.13 -8.62 16 5 H 0.09 2.49 7.82 -52.49 -0.41 2.08 16 6 C 0.04 1.02 4.95 -17.47 -0.09 0.93 16 7 N -0.87 -23.60 11.61 55.50 0.64 -22.95 16 8 Si 0.92 20.85 29.59 -169.99 -5.03 15.82 16 9 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 10 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 11 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 12 C 0.47 11.32 7.59 -10.98 -0.08 11.23 16 13 O -0.57 -16.12 15.95 5.55 0.09 -16.04 16 14 C -0.07 -1.27 4.84 -29.03 -0.14 -1.41 16 15 C -0.12 -2.12 4.81 -102.71 -0.49 -2.62 16 16 C 0.05 0.79 11.73 -16.73 -0.20 0.59 16 17 N -0.59 -7.50 6.07 -10.64 -0.06 -7.57 16 18 H 0.41 3.61 8.96 -40.82 -0.37 3.24 16 19 C 0.10 1.44 7.28 -83.97 -0.61 0.83 16 20 C -0.12 -1.49 10.08 -39.43 -0.40 -1.89 16 21 C -0.10 -1.23 9.79 -39.51 -0.39 -1.62 16 22 C -0.06 -0.94 6.28 -39.87 -0.25 -1.19 16 23 Cl -0.08 -1.13 28.93 -51.86 -1.50 -2.63 16 24 C -0.05 -0.80 9.81 -39.61 -0.39 -1.19 16 25 C -0.08 -1.35 6.35 -105.14 -0.67 -2.02 16 26 H 0.05 0.74 8.14 -51.92 -0.42 0.32 16 27 H 0.04 0.72 6.58 -51.93 -0.34 0.38 16 28 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.10 2.41 5.76 -51.93 -0.30 2.11 16 30 H 0.05 0.91 6.66 -51.93 -0.35 0.56 16 31 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 32 H 0.09 1.43 6.53 -51.93 -0.34 1.09 16 33 H 0.09 1.45 7.40 -51.93 -0.38 1.07 16 34 H 0.17 2.03 8.06 -52.48 -0.42 1.61 16 35 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 37 H 0.13 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 330.40 15.07 4.98 4.98 Total: -1.00 -33.04 330.40 -8.81 -41.85 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -4.16 Total: 5.37 kcal Atomic # 6 Polarization: -3.86 SS G_CDS: -3.48 Total: -7.34 kcal Atomic # 7 Polarization: -42.30 SS G_CDS: 0.29 Total: -42.01 kcal Atomic # 8 Polarization: -16.12 SS G_CDS: 0.09 Total: -16.04 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.03 Total: 15.82 kcal Atomic # 17 Polarization: -1.13 SS G_CDS: -1.50 Total: -2.63 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -33.04 -8.81 -41.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000150979222.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.107 kcal (2) G-P(sol) polarization free energy of solvation -33.040 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.848 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds