Wall clock time and date at job start Tue Mar 31 2020 08:18:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13594 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39694 * 120.07686 * 295.00328 * 3 2 1 5 5 C 1.38257 * 120.08730 * 179.97438 * 4 3 2 6 6 F 1.35094 * 119.88534 * 179.97438 * 5 4 3 7 7 C 1.38356 * 120.23288 * 0.02562 * 5 4 3 8 8 C 1.39473 * 120.15443 * 359.72434 * 7 5 4 9 9 C 1.48214 * 120.04894 * 180.30271 * 8 7 5 10 10 C 1.39157 * 120.28351 * 236.89978 * 9 8 7 11 11 C 1.38328 * 120.10875 * 180.02562 * 10 9 8 12 12 C 1.38032 * 120.76967 * 0.02562 * 11 10 9 13 13 C 1.39122 * 120.24053 * 359.97438 * 12 11 10 14 14 N 1.38174 * 132.74620 * 180.02562 * 13 12 11 15 15 H 0.96999 * 124.70397 * 359.96659 * 14 13 12 16 16 C 1.35601 * 110.59537 * 179.26215 * 14 13 12 17 17 C 1.38988 * 109.24450 * 0.68253 * 16 14 13 18 18 C 1.40962 * 126.92962 * 179.45568 * 17 16 14 19 19 H 1.07999 * 120.00335 * 202.20989 * 18 17 16 20 20 C 1.39689 * 119.99969 * 22.20852 * 18 17 16 21 21 N 1.31082 * 119.99824 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00368 * 179.97438 * 20 18 17 23 23 H 1.48503 * 109.46679 * 0.02562 * 22 20 18 24 24 H 1.48492 * 109.47057 * 120.00213 * 22 20 18 25 25 H 1.48492 * 109.47282 * 240.00310 * 22 20 18 26 26 C 1.40190 * 120.28284 * 56.62257 * 9 8 7 27 27 C 1.39198 * 119.90999 * 0.55020 * 8 7 5 28 28 H 1.08001 * 119.95838 * 359.95284 * 4 3 2 29 29 H 1.08007 * 119.92093 * 179.97438 * 7 5 4 30 30 H 1.08000 * 119.94331 * 0.02562 * 10 9 8 31 31 H 1.07999 * 119.61131 * 179.97438 * 11 10 9 32 32 H 1.08003 * 119.88178 * 179.97438 * 12 11 10 33 33 H 1.07995 * 125.37824 * 180.10484 * 16 14 13 34 34 H 0.97002 * 119.99901 * 179.97438 * 21 20 18 35 35 H 1.08002 * 120.11926 * 179.72592 * 27 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5679 0.0006 0.0000 4 6 3.2682 -0.5100 1.0956 5 6 4.6508 -0.5100 1.0956 6 9 5.3240 -1.0043 2.1574 7 6 5.3475 -0.0045 0.0123 8 6 4.6583 0.5030 -1.0889 9 6 5.4069 1.0378 -2.2509 10 6 5.1954 2.3443 -2.6810 11 6 5.8957 2.8395 -3.7662 12 6 6.8094 2.0513 -4.4365 13 6 7.0391 0.7419 -4.0264 14 7 7.8741 -0.2547 -4.4943 15 1 8.4735 -0.1626 -5.2513 16 6 7.7506 -1.3741 -3.7391 17 6 6.8056 -1.1535 -2.7441 18 6 6.3808 -2.0703 -1.7612 19 1 5.4228 -1.9406 -1.2797 20 6 7.1989 -3.1467 -1.4099 21 7 8.3614 -3.3044 -1.9947 22 14 6.6364 -4.3613 -0.1069 23 1 5.2967 -3.9633 0.3952 24 1 6.5590 -5.7212 -0.6984 25 1 7.6060 -4.3652 1.0177 26 6 6.3384 0.2337 -2.9226 27 6 3.2663 0.5113 -1.0931 28 1 2.7290 -0.9050 1.9438 29 1 6.4275 -0.0065 0.0178 30 1 4.4833 2.9725 -2.1666 31 1 5.7250 3.8545 -4.0934 32 1 7.3480 2.4525 -5.2823 33 1 8.2934 -2.2950 -3.8927 34 1 8.9297 -4.0517 -1.7505 35 1 2.7292 0.9075 -1.9422 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241659310.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:18:31 Heat of formation + Delta-G solvation = 57.477665 kcal Electronic energy + Delta-G solvation = -23688.415258 eV Core-core repulsion = 20144.803706 eV Total energy + Delta-G solvation = -3543.611552 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.086 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -48.56633 -40.06164 -38.87279 -36.45904 -35.76303 -33.65069 -32.23863 -30.67224 -29.77565 -28.31379 -27.73389 -24.87088 -23.92769 -23.01446 -21.13651 -20.65206 -19.66924 -18.74003 -16.80758 -16.24278 -16.05686 -15.89468 -15.75145 -15.38639 -15.25300 -14.55380 -14.39761 -13.78324 -13.42696 -13.34743 -13.30447 -13.17606 -12.99597 -12.59765 -12.41956 -11.81835 -11.74516 -11.50524 -11.33890 -11.26360 -11.18948 -10.92039 -10.67010 -10.48101 -10.00429 -9.82194 -9.31919 -8.84038 -8.48428 -8.23212 -7.22776 -6.61548 -6.56496 -4.08822 0.88343 1.26016 1.99592 2.45178 2.70496 3.03496 3.09497 3.17955 3.22966 3.82965 3.97189 4.03603 4.13371 4.38501 4.52712 4.71328 4.91959 5.15100 5.23352 5.41572 5.48558 5.57309 5.73630 5.80938 5.91743 6.18272 6.22139 6.28634 6.33747 6.47381 6.64686 6.70043 6.98257 7.01698 7.05926 7.24088 7.33646 7.47366 7.52317 7.62679 7.88991 8.20069 8.54461 8.88538 9.03908 9.08090 10.45799 Molecular weight = 306.09amu Principal moments of inertia in cm(-1) A = 0.009636 B = 0.007814 C = 0.004870 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2905.206564 B = 3582.519120 C = 5748.597828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C 0.268 3.732 3 C -0.018 4.018 4 C -0.115 4.115 5 C 0.093 3.907 6 F -0.136 7.136 7 C -0.068 4.068 8 C 0.008 3.992 9 C -0.010 4.010 10 C -0.162 4.162 11 C -0.119 4.119 12 C -0.139 4.139 13 C 0.084 3.916 14 N -0.590 5.590 15 H 0.396 0.604 16 C -0.069 4.069 17 C 0.023 3.977 18 C -0.426 4.426 19 H 0.076 0.924 20 C 0.065 3.935 21 N -0.833 5.833 22 Si 0.896 3.104 23 H -0.261 1.261 24 H -0.278 1.278 25 H -0.276 1.276 26 C -0.107 4.107 27 C -0.070 4.070 28 H 0.138 0.862 29 H 0.151 0.849 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.103 0.897 33 H 0.176 0.824 34 H 0.272 0.728 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.312 6.660 0.738 7.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.104 5.104 2 C -0.047 4.047 3 C -0.022 4.022 4 C -0.136 4.136 5 C 0.074 3.926 6 F -0.115 7.115 7 C -0.087 4.087 8 C 0.008 3.992 9 C -0.010 4.010 10 C -0.182 4.182 11 C -0.139 4.139 12 C -0.161 4.161 13 C -0.027 4.027 14 N -0.191 5.191 15 H 0.229 0.771 16 C -0.193 4.193 17 C 0.018 3.982 18 C -0.459 4.459 19 H 0.094 0.906 20 C -0.146 4.146 21 N -0.464 5.464 22 Si 0.722 3.278 23 H -0.185 1.185 24 H -0.203 1.203 25 H -0.201 1.201 26 C -0.114 4.114 27 C -0.091 4.091 28 H 0.156 0.844 29 H 0.169 0.831 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.121 0.879 33 H 0.192 0.808 34 H 0.083 0.917 35 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -3.779 6.360 0.739 7.435 hybrid contribution 0.863 -0.846 0.395 1.272 sum -2.916 5.514 1.134 6.340 Atomic orbital electron populations 1.81209 1.11996 1.09211 1.07984 1.25572 0.92462 0.93264 0.93362 1.15433 0.84119 1.06016 0.96594 1.20938 0.92531 1.01354 0.98815 1.17248 0.89325 1.00206 0.85851 1.91509 1.80288 1.85478 1.54176 1.21587 1.02270 0.94259 0.90617 1.18433 0.91535 0.96288 0.92992 1.17834 0.96187 0.93158 0.93842 1.20590 1.03371 0.94699 0.99528 1.20322 0.98071 0.98560 0.96918 1.19911 1.02372 0.91847 1.01955 1.18113 0.96370 0.90564 0.97669 1.41482 1.36720 1.11770 1.29161 0.77084 1.22727 1.09844 0.90480 0.96253 1.17980 0.96053 0.88873 0.95291 1.18760 1.03188 1.06195 1.17788 0.90627 1.25559 0.94253 0.97913 0.96838 1.69685 1.09117 1.28439 1.39132 0.86394 0.80030 0.80433 0.80925 1.18452 1.20341 1.20124 1.19400 0.98956 0.95810 0.97236 1.21261 0.93311 0.97875 0.96653 0.84427 0.83134 0.87126 0.87136 0.87918 0.80759 0.91735 0.84552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.79 18.54 41.83 0.78 -6.02 16 2 C 0.27 3.86 15.32 -22.48 -0.34 3.51 16 3 C -0.02 -0.25 5.72 -106.99 -0.61 -0.87 16 4 C -0.11 -1.62 9.72 -39.03 -0.38 -1.99 16 5 C 0.09 1.50 7.28 -39.53 -0.29 1.21 16 6 F -0.14 -2.28 17.26 2.25 0.04 -2.24 16 7 C -0.07 -1.18 6.68 -39.08 -0.26 -1.44 16 8 C 0.01 0.13 4.60 -104.98 -0.48 -0.35 16 9 C -0.01 -0.18 5.40 -104.72 -0.57 -0.74 16 10 C -0.16 -2.60 9.62 -39.21 -0.38 -2.98 16 11 C -0.12 -1.85 10.00 -39.62 -0.40 -2.25 16 12 C -0.14 -2.34 10.06 -39.33 -0.40 -2.74 16 13 C 0.08 1.67 7.23 -83.91 -0.61 1.06 16 14 N -0.59 -11.55 5.99 -9.81 -0.06 -11.61 16 15 H 0.40 6.26 8.96 -40.82 -0.37 5.90 16 16 C -0.07 -1.58 10.77 -15.61 -0.17 -1.75 16 17 C 0.02 0.56 5.96 -104.83 -0.62 -0.07 16 18 C -0.43 -10.40 7.54 -38.01 -0.29 -10.69 16 19 H 0.08 1.80 5.60 -52.49 -0.29 1.51 16 20 C 0.07 1.58 5.47 -17.33 -0.09 1.49 16 21 N -0.83 -20.65 10.83 55.54 0.60 -20.05 16 22 Si 0.90 19.05 29.56 -169.99 -5.02 14.03 16 23 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 24 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 25 H -0.28 -5.86 7.11 56.52 0.40 -5.46 16 26 C -0.11 -2.30 6.07 -104.64 -0.64 -2.94 16 27 C -0.07 -1.03 9.33 -38.79 -0.36 -1.40 16 28 H 0.14 1.62 8.06 -52.49 -0.42 1.20 16 29 H 0.15 2.84 7.82 -52.48 -0.41 2.43 16 30 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 31 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 32 H 0.10 1.46 8.06 -52.48 -0.42 1.03 16 33 H 0.18 4.18 6.39 -52.49 -0.34 3.84 16 34 H 0.27 6.32 8.30 -40.82 -0.34 5.99 16 35 H 0.14 1.79 8.06 -52.49 -0.42 1.36 16 LS Contribution 317.65 15.07 4.79 4.79 Total: -1.00 -26.37 317.65 -8.42 -34.78 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -2.65 Total: 9.25 kcal Atomic # 6 Polarization: -16.05 SS G_CDS: -6.88 Total: -22.93 kcal Atomic # 7 Polarization: -39.00 SS G_CDS: 1.32 Total: -37.68 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.04 Total: -2.24 kcal Atomic # 14 Polarization: 19.05 SS G_CDS: -5.02 Total: 14.03 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -26.37 -8.42 -34.78 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241659310.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.261 kcal (2) G-P(sol) polarization free energy of solvation -26.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds