Wall clock time and date at job start Tue Mar 31 2020 09:30:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 120.00209 * 2 1 4 4 H 1.48501 * 109.46896 * 269.99771 * 3 2 1 5 5 H 1.48499 * 109.47039 * 29.99931 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99731 * 3 2 1 7 7 C 1.37880 * 119.99843 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99749 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99756 * 0.02562 * 7 2 1 10 10 C 1.52999 * 109.47004 * 179.97438 * 9 7 2 11 11 N 1.46500 * 109.47528 * 180.02562 * 10 9 7 12 12 C 1.34773 * 120.00431 * 180.02562 * 11 10 9 13 13 O 1.21593 * 119.99894 * 359.97438 * 12 11 10 14 14 N 1.34777 * 120.00097 * 179.72742 * 12 11 10 15 15 C 1.46504 * 119.99854 * 180.27545 * 14 12 11 16 16 C 1.53004 * 109.46928 * 179.97438 * 15 14 12 17 17 H 1.09001 * 109.26615 * 304.52767 * 16 15 14 18 18 C 1.54137 * 109.28004 * 63.97312 * 16 15 14 19 19 S 1.83304 * 101.07350 * 148.60737 * 18 16 15 20 20 C 1.77432 * 96.61384 * 335.16449 * 19 18 16 21 21 C 1.38822 * 130.57200 * 195.43285 * 20 19 18 22 22 C 1.38029 * 120.15926 * 179.35767 * 21 20 19 23 23 C 1.38319 * 119.29385 * 359.97438 * 22 21 20 24 24 C 1.37699 * 120.53980 * 0.19213 * 23 22 21 25 25 C 1.38881 * 108.28183 * 15.16208 * 20 19 18 26 26 H 0.97004 * 119.99483 * 0.02562 * 1 2 3 27 27 H 1.09003 * 109.47112 * 60.00500 * 9 7 2 28 28 H 1.08993 * 109.47444 * 300.00124 * 9 7 2 29 29 H 1.09009 * 109.47054 * 60.00482 * 10 9 7 30 30 H 1.08998 * 109.47782 * 300.00944 * 10 9 7 31 31 H 0.97000 * 119.99456 * 0.02562 * 11 10 9 32 32 H 0.97000 * 119.99736 * 0.26819 * 14 12 11 33 33 H 1.08998 * 109.46968 * 299.99782 * 15 14 12 34 34 H 1.08997 * 109.47198 * 59.99605 * 15 14 12 35 35 H 1.09000 * 111.10556 * 266.55681 * 18 16 15 36 36 H 1.09003 * 111.10333 * 30.66200 * 18 16 15 37 37 H 1.08004 * 119.91758 * 359.35149 * 21 20 19 38 38 H 1.08004 * 120.35255 * 179.97438 * 22 21 20 39 39 H 1.08000 * 119.72936 * 180.16345 * 23 22 21 40 40 H 1.08009 * 119.46809 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0005 10 6 2.2451 -3.6621 0.0005 11 7 1.5126 -4.9308 -0.0001 12 6 2.1864 -6.0980 0.0003 13 8 3.4024 -6.0981 0.0007 14 7 1.5125 -7.2652 0.0053 15 6 2.2450 -8.5339 0.0119 16 6 1.2507 -9.6968 0.0172 17 1 0.5734 -9.5870 0.8641 18 6 0.4352 -9.6753 -1.2906 19 16 0.1161 -11.4635 -1.5361 20 6 1.5141 -12.0491 -0.6136 21 6 2.1102 -13.3022 -0.5759 22 6 3.2152 -13.5208 0.2219 23 6 3.7193 -12.4794 0.9799 24 6 3.1258 -11.2374 0.9450 25 6 2.0053 -10.9968 0.1480 26 1 -0.4849 0.8401 -0.0004 27 1 0.6247 -2.5571 -0.8898 28 1 0.6239 -2.5567 0.8902 29 1 2.8717 -3.6044 0.8906 30 1 2.8719 -3.6044 -0.8893 31 1 0.5426 -4.9308 -0.0008 32 1 0.5425 -7.2651 0.0047 33 1 2.8723 -8.5959 -0.8774 34 1 2.8710 -8.5875 0.9025 35 1 -0.4966 -9.1243 -1.1631 36 1 1.0222 -9.2651 -2.1124 37 1 1.7084 -14.1081 -1.1722 38 1 3.6812 -14.4946 0.2539 39 1 4.5852 -12.6419 1.6046 40 1 3.5336 -10.4366 1.5442 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000454777607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:30:53 Heat of formation + Delta-G solvation = -15.442069 kcal Electronic energy + Delta-G solvation = -21353.648948 eV Core-core repulsion = 18065.779615 eV Total energy + Delta-G solvation = -3287.869332 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.114 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.16840 -39.41253 -36.59774 -34.80923 -33.50281 -32.76435 -31.29749 -30.05619 -29.38431 -27.00571 -24.66204 -23.47561 -22.91834 -21.10176 -20.94080 -20.57369 -18.37962 -17.78959 -16.66089 -16.31886 -15.93511 -15.67836 -15.47795 -15.04212 -14.93750 -14.52056 -14.15593 -13.81366 -13.71705 -13.47504 -13.35615 -13.07079 -12.80242 -12.47528 -12.28406 -12.01571 -11.73031 -11.31583 -11.19976 -11.03807 -10.64021 -10.53242 -10.33176 -10.04519 -9.99849 -9.57819 -9.27812 -9.20669 -9.11219 -8.50092 -8.28173 -7.78926 -6.10109 -4.12681 0.74780 0.92739 1.21429 1.86378 2.92987 3.25933 3.29242 3.35432 3.39961 3.53948 3.90869 4.15723 4.34217 4.39623 4.52380 4.64908 4.67379 4.75165 4.94487 5.03075 5.11275 5.19468 5.27112 5.33881 5.47226 5.61223 5.66898 5.86281 5.95586 6.10289 6.26709 6.38040 6.46023 6.49023 6.75913 6.96481 7.16238 7.55108 7.61927 7.89014 8.24117 8.38669 8.90733 8.95918 9.52112 11.01527 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.034370 B = 0.002176 C = 0.002072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.462301 B =12866.019763 C =13512.790654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.272 1.272 7 C -0.521 4.521 8 H 0.060 0.940 9 C 0.013 3.987 10 C 0.140 3.860 11 N -0.738 5.738 12 C 0.699 3.301 13 O -0.597 6.597 14 N -0.755 5.755 15 C 0.153 3.847 16 C -0.064 4.064 17 H 0.107 0.893 18 C -0.082 4.082 19 S -0.148 6.148 20 C -0.076 4.076 21 C -0.090 4.090 22 C -0.102 4.102 23 C -0.119 4.119 24 C -0.088 4.088 25 C -0.097 4.097 26 H 0.262 0.738 27 H 0.022 0.978 28 H 0.022 0.978 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.393 0.607 32 H 0.394 0.606 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.118 0.882 36 H 0.105 0.895 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.129 0.871 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.362 -27.796 0.244 27.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.559 4.559 8 H 0.078 0.922 9 C -0.025 4.025 10 C 0.017 3.983 11 N -0.391 5.391 12 C 0.399 3.601 13 O -0.475 6.475 14 N -0.412 5.412 15 C 0.027 3.973 16 C -0.084 4.084 17 H 0.125 0.875 18 C -0.230 4.230 19 S 0.094 5.906 20 C -0.188 4.188 21 C -0.113 4.113 22 C -0.122 4.122 23 C -0.139 4.139 24 C -0.108 4.108 25 C -0.103 4.103 26 H 0.071 0.929 27 H 0.040 0.960 28 H 0.040 0.960 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.226 0.774 32 H 0.227 0.773 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.137 0.863 36 H 0.124 0.876 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.147 0.853 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.325 -28.162 -0.463 28.168 hybrid contribution 0.395 1.483 0.653 1.668 sum 0.720 -26.679 0.190 26.689 Atomic orbital electron populations 1.69957 1.06087 1.26857 1.50438 1.25001 0.94907 0.99428 0.95011 0.86505 0.79839 0.82967 0.78201 1.20558 1.21187 1.19716 1.21051 0.93276 0.90349 1.51265 0.92212 1.19324 0.94249 0.91082 0.97801 1.21604 0.95649 0.80362 1.00681 1.45536 1.09861 1.05313 1.78389 1.16034 0.85631 0.80427 0.78058 1.90901 1.11749 1.86635 1.58239 1.45101 1.09377 1.04624 1.82143 1.21129 0.92991 0.80074 1.03091 1.20796 0.96796 0.92433 0.98330 0.87517 1.24500 1.04149 0.94289 1.00026 1.86179 1.31362 1.05307 1.67726 1.22037 0.98813 0.97134 1.00817 1.20429 0.95975 0.94858 1.00074 1.21137 0.95700 0.99327 0.96007 1.21019 1.00337 0.92715 0.99804 1.20938 0.94149 0.97638 0.98076 1.20556 0.97487 0.93601 0.98671 0.92862 0.95986 0.95960 0.92752 0.92761 0.77377 0.77260 0.91151 0.91002 0.86347 0.87625 0.85508 0.85063 0.85345 0.85426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.00 13.29 55.43 0.74 -25.27 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 7 C -0.52 -14.39 9.11 -34.44 -0.31 -14.71 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 10 C 0.14 2.97 5.61 -4.04 -0.02 2.95 16 11 N -0.74 -12.65 5.56 -65.22 -0.36 -13.01 16 12 C 0.70 11.76 8.57 -86.92 -0.74 11.02 16 13 O -0.60 -12.59 16.34 5.28 0.09 -12.50 16 14 N -0.75 -8.70 5.34 -65.22 -0.35 -9.04 16 15 C 0.15 1.58 4.73 -4.04 -0.02 1.56 16 16 C -0.06 -0.52 2.66 -91.09 -0.24 -0.76 16 17 H 0.11 0.78 8.14 -51.93 -0.42 0.35 16 18 C -0.08 -0.62 6.52 37.75 0.25 -0.38 16 19 S -0.15 -1.38 23.08 -107.50 -2.48 -3.86 16 20 C -0.08 -0.72 6.48 -39.13 -0.25 -0.98 16 21 C -0.09 -0.74 10.05 -39.44 -0.40 -1.14 16 22 C -0.10 -0.71 10.08 -39.63 -0.40 -1.11 16 23 C -0.12 -0.87 10.00 -39.75 -0.40 -1.27 16 24 C -0.09 -0.75 9.44 -39.27 -0.37 -1.12 16 25 C -0.10 -0.89 5.57 -103.79 -0.58 -1.47 16 26 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 27 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 29 H 0.05 1.21 8.14 -51.92 -0.42 0.78 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.39 5.70 8.49 -40.82 -0.35 5.36 16 32 H 0.39 3.35 8.22 -40.82 -0.34 3.01 16 33 H 0.07 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.07 0.79 6.96 -51.93 -0.36 0.43 16 35 H 0.12 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.11 0.85 7.88 -51.93 -0.41 0.44 16 37 H 0.13 0.86 8.06 -52.48 -0.42 0.44 16 38 H 0.13 0.59 8.06 -52.48 -0.42 0.16 16 39 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 40 H 0.13 0.97 7.05 -52.48 -0.37 0.60 16 LS Contribution 349.58 15.07 5.27 5.27 Total: -1.00 -33.20 349.58 -11.44 -44.64 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.59 Total: 3.16 kcal Atomic # 6 Polarization: -1.96 SS G_CDS: -3.73 Total: -5.69 kcal Atomic # 7 Polarization: -47.35 SS G_CDS: 0.03 Total: -47.32 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.38 SS G_CDS: -2.48 Total: -3.86 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -33.20 -11.44 -44.64 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000454777607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.195 kcal (2) G-P(sol) polarization free energy of solvation -33.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.442 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds