Wall clock time and date at job start Tue Mar 31 2020 08:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09002 * 109.60074 * 2 1 4 4 C 1.55144 * 109.60808 * 239.67539 * 2 1 3 5 5 S 1.83984 * 100.91324 * 198.63267 * 4 2 1 6 6 C 1.83394 * 95.85255 * 35.34927 * 5 4 2 7 7 C 1.52941 * 109.60371 * 120.13764 * 2 1 3 8 8 H 1.09005 * 108.88622 * 29.23439 * 7 2 1 9 9 N 1.46508 * 108.88798 * 270.82801 * 7 2 1 10 10 C 1.34772 * 119.99807 * 154.99620 * 9 7 2 11 11 O 1.21578 * 120.00450 * 0.02562 * 10 9 7 12 12 N 1.34777 * 120.00089 * 179.97438 * 10 9 7 13 13 C 1.39241 * 120.00537 * 175.71050 * 12 10 9 14 14 C 1.39480 * 119.83573 * 215.02303 * 13 12 10 15 15 C 1.36377 * 120.16475 * 179.76130 * 14 13 12 16 16 C 1.40863 * 119.83092 * 0.53533 * 15 14 13 17 17 C 1.41160 * 120.16753 * 179.69831 * 16 15 14 18 18 H 1.07995 * 120.00394 * 214.80691 * 17 16 15 19 19 C 1.39895 * 119.99652 * 34.80440 * 17 16 15 20 20 N 1.30885 * 119.99851 * 355.55721 * 19 17 16 21 21 Si 1.86792 * 120.00163 * 175.56075 * 19 17 16 22 22 H 1.48509 * 109.47142 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47402 * 119.99411 * 21 19 17 24 24 H 1.48504 * 109.47408 * 240.00116 * 21 19 17 25 25 C 1.40872 * 119.67185 * 359.71912 * 16 15 14 26 26 C 1.36367 * 119.82897 * 359.97438 * 25 16 15 27 27 H 1.08998 * 109.47338 * 178.87041 * 1 2 3 28 28 H 1.09000 * 109.47636 * 298.87173 * 1 2 3 29 29 H 1.09001 * 109.47006 * 58.87254 * 1 2 3 30 30 H 1.09005 * 111.13053 * 316.54335 * 4 2 1 31 31 H 1.09004 * 111.13312 * 80.72114 * 4 2 1 32 32 H 1.08994 * 110.33996 * 99.12619 * 6 5 4 33 33 H 1.09003 * 110.34453 * 221.37833 * 6 5 4 34 34 H 0.96996 * 119.99834 * 334.99953 * 9 7 2 35 35 H 0.97002 * 119.99956 * 355.71328 * 12 10 9 36 36 H 1.07999 * 119.91316 * 359.97438 * 14 13 12 37 37 H 1.08000 * 120.08335 * 180.25224 * 15 14 13 38 38 H 0.97007 * 119.99723 * 180.02562 * 20 19 17 39 39 H 1.08004 * 120.08735 * 179.97438 * 25 16 15 40 40 H 1.08002 * 119.91990 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8956 1.0269 0.0000 4 6 2.0506 -0.7379 -1.2615 5 16 3.7801 -1.1117 -0.7574 6 6 3.3993 -1.4077 1.0120 7 6 2.0431 -0.7234 1.2460 8 1 1.3136 -1.4775 1.5417 9 7 2.1833 0.2476 2.3341 10 6 2.1236 -0.1637 3.6161 11 8 1.9538 -1.3406 3.8698 12 7 2.2531 0.7294 4.6172 13 6 2.1025 0.3200 5.9395 14 6 1.5196 1.1800 6.8701 15 6 1.3644 0.7840 8.1658 16 6 1.8048 -0.4928 8.5659 17 6 1.6534 -0.9075 9.9067 18 1 2.4012 -1.5379 10.3647 19 6 0.5348 -0.5017 10.6423 20 7 -0.3266 0.3320 10.1169 21 14 0.2706 -1.1495 12.3742 22 1 1.3787 -2.0711 12.7325 23 1 0.2433 -0.0127 13.3293 24 1 -1.0205 -1.8805 12.4378 25 6 2.3974 -1.3537 7.6214 26 6 2.5402 -0.9462 6.3279 27 1 -0.3634 -1.0274 -0.0203 28 1 -0.3634 0.4962 0.8999 29 1 -0.3633 0.5313 -0.8797 30 1 1.4872 -1.6535 -1.4417 31 1 2.0280 -0.0865 -2.1352 32 1 3.3233 -2.4769 1.2094 33 1 4.1648 -0.9583 1.6446 34 1 2.3191 1.1865 2.1318 35 1 2.4513 1.6575 4.4164 36 1 1.1872 2.1606 6.5629 37 1 0.9092 1.4494 8.8844 38 1 -1.1021 0.6136 10.6271 39 1 2.7378 -2.3340 7.9209 40 1 2.9947 -1.6049 5.6026 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336147708.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:43:03 Heat of formation + Delta-G solvation = -9.387662 kcal Electronic energy + Delta-G solvation = -22166.600738 eV Core-core repulsion = 18878.993945 eV Total energy + Delta-G solvation = -3287.606794 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 306.114 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.19498 -38.10548 -36.90755 -34.40315 -33.49753 -32.72766 -30.12685 -29.52560 -28.64969 -27.51327 -25.10451 -23.83067 -21.65796 -20.88711 -20.73085 -19.96141 -17.96111 -17.24827 -17.17557 -16.47230 -15.95891 -15.20307 -15.13907 -14.63109 -14.31334 -14.11306 -13.86249 -13.50243 -13.25436 -13.01501 -12.71629 -12.58791 -12.16346 -12.08728 -11.85416 -11.75030 -11.64046 -11.34863 -11.16451 -11.15243 -10.97966 -10.72266 -10.25493 -10.09011 -9.54628 -9.46036 -9.24302 -9.08654 -8.87573 -7.95159 -7.52869 -6.82761 -6.59861 -4.32066 1.56285 2.03327 2.65478 2.91657 3.09801 3.10395 3.15021 3.17589 3.62653 3.99725 4.10306 4.27156 4.52378 4.61050 4.71802 4.73865 4.92718 5.08559 5.10142 5.25999 5.44235 5.49377 5.65387 5.69565 5.72804 5.87121 6.19735 6.41715 6.49127 6.76709 6.79320 7.05477 7.16082 7.27044 7.40092 7.66675 7.86188 7.97383 8.11047 8.32240 8.43554 8.65861 8.91790 8.95295 9.07008 10.31394 Molecular weight = 306.11amu Principal moments of inertia in cm(-1) A = 0.036214 B = 0.002615 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 773.003997 B =10703.965468 C =10971.589017 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.101 4.101 3 H 0.091 0.909 4 C -0.061 4.061 5 S -0.303 6.303 6 C -0.075 4.075 7 C 0.165 3.835 8 H 0.099 0.901 9 N -0.745 5.745 10 C 0.694 3.306 11 O -0.575 6.575 12 N -0.665 5.665 13 C 0.022 3.978 14 C -0.123 4.123 15 C -0.141 4.141 16 C 0.098 3.902 17 C -0.461 4.461 18 H 0.076 0.924 19 C 0.069 3.931 20 N -0.813 5.813 21 Si 0.915 3.085 22 H -0.262 1.262 23 H -0.275 1.275 24 H -0.275 1.275 25 C -0.204 4.204 26 C -0.086 4.086 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.109 0.891 32 H 0.097 0.903 33 H 0.104 0.896 34 H 0.394 0.606 35 H 0.392 0.608 36 H 0.090 0.910 37 H 0.132 0.868 38 H 0.276 0.724 39 H 0.095 0.905 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.721 3.325 -18.476 18.852 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.122 4.122 3 H 0.110 0.890 4 C -0.210 4.210 5 S -0.077 6.077 6 C -0.224 4.224 7 C 0.057 3.943 8 H 0.117 0.883 9 N -0.402 5.402 10 C 0.395 3.605 11 O -0.452 6.452 12 N -0.311 5.311 13 C -0.071 4.071 14 C -0.143 4.143 15 C -0.161 4.161 16 C 0.095 3.905 17 C -0.492 4.492 18 H 0.094 0.906 19 C -0.146 4.146 20 N -0.441 5.441 21 Si 0.740 3.260 22 H -0.186 1.186 23 H -0.200 1.200 24 H -0.200 1.200 25 C -0.224 4.224 26 C -0.106 4.106 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.113 0.887 31 H 0.127 0.873 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.228 0.772 35 H 0.225 0.775 36 H 0.108 0.892 37 H 0.150 0.850 38 H 0.087 0.913 39 H 0.114 0.886 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.393 2.291 -18.792 19.082 hybrid contribution -1.144 0.646 1.163 1.755 sum 1.249 2.937 -17.629 17.915 Atomic orbital electron populations 1.21836 0.92896 1.02811 1.02646 1.22219 0.97539 1.00678 0.91745 0.89024 1.24371 0.93126 1.03392 1.00087 1.87911 1.15179 1.92846 1.11720 1.24550 1.00213 1.04844 0.92812 1.21290 0.95452 0.91368 0.86197 0.88290 1.45291 1.80247 1.10617 1.04070 1.16031 0.78432 0.85757 0.80256 1.90916 1.56111 1.15606 1.82530 1.42108 1.73593 1.10811 1.04574 1.17070 1.11093 0.97683 0.81237 1.20288 1.01373 0.98106 0.94559 1.21175 1.03497 0.96949 0.94444 1.17724 0.89471 0.90255 0.93004 1.19521 1.05875 1.27535 0.96273 0.90614 1.25870 0.95452 0.93567 0.99675 1.69779 1.10537 1.26411 1.37368 0.86159 0.79046 0.79343 0.81484 1.18610 1.20037 1.20029 1.20810 1.09752 0.99123 0.92721 1.20413 0.99533 0.94929 0.95737 0.91951 0.91653 0.91872 0.88692 0.87306 0.88411 0.87718 0.77239 0.77511 0.89187 0.85045 0.91278 0.88645 0.87369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 9.01 37.15 0.33 -0.66 16 2 C -0.10 -0.76 2.73 -89.52 -0.24 -1.00 16 3 H 0.09 0.62 7.69 -51.93 -0.40 0.22 16 4 C -0.06 -0.44 6.86 38.29 0.26 -0.18 16 5 S -0.30 -3.13 23.23 -107.50 -2.50 -5.63 16 6 C -0.07 -0.84 7.06 37.52 0.26 -0.57 16 7 C 0.16 1.74 2.46 -67.59 -0.17 1.57 16 8 H 0.10 1.25 7.23 -51.93 -0.38 0.88 16 9 N -0.75 -8.60 4.91 -58.34 -0.29 -8.88 16 10 C 0.69 11.67 8.31 -86.92 -0.72 10.95 16 11 O -0.57 -12.15 13.43 5.30 0.07 -12.08 16 12 N -0.67 -11.33 5.31 -14.10 -0.07 -11.41 16 13 C 0.02 0.48 6.31 -83.57 -0.53 -0.05 16 14 C -0.12 -2.78 9.90 -39.79 -0.39 -3.17 16 15 C -0.14 -3.61 8.61 -39.26 -0.34 -3.94 16 16 C 0.10 2.63 5.55 -106.80 -0.59 2.04 16 17 C -0.46 -12.35 9.02 -37.85 -0.34 -12.70 16 18 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 19 C 0.07 1.75 5.42 -17.34 -0.09 1.66 16 20 N -0.81 -21.21 10.60 55.55 0.59 -20.63 16 21 Si 0.91 19.11 29.56 -169.99 -5.03 14.08 16 22 H -0.26 -5.42 7.11 56.52 0.40 -5.02 16 23 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 24 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 25 C -0.20 -5.19 9.74 -39.26 -0.38 -5.57 16 26 C -0.09 -2.06 8.61 -39.79 -0.34 -2.40 16 27 H 0.06 0.45 8.12 -51.93 -0.42 0.02 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.62 8.11 -51.93 -0.42 0.20 16 31 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.10 1.28 7.89 -51.93 -0.41 0.87 16 34 H 0.39 3.39 8.30 -40.82 -0.34 3.05 16 35 H 0.39 5.15 8.83 -40.82 -0.36 4.79 16 36 H 0.09 1.77 8.06 -52.49 -0.42 1.35 16 37 H 0.13 3.48 6.13 -52.49 -0.32 3.16 16 38 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 39 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 40 H 0.11 2.58 6.22 -52.49 -0.33 2.25 16 LS Contribution 341.28 15.07 5.14 5.14 Total: -1.00 -30.70 341.28 -10.82 -41.53 By element: Atomic # 1 Polarization: 17.36 SS G_CDS: -5.46 Total: 11.90 kcal Atomic # 6 Polarization: -10.74 SS G_CDS: -3.28 Total: -14.02 kcal Atomic # 7 Polarization: -41.15 SS G_CDS: 0.23 Total: -40.92 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.07 Total: -12.08 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.03 Total: 14.08 kcal Atomic # 16 Polarization: -3.13 SS G_CDS: -2.50 Total: -5.63 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -30.70 -10.82 -41.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336147708.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.138 kcal (2) G-P(sol) polarization free energy of solvation -30.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds