Wall clock time and date at job start Tue Mar 31 2020 08:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00458 * 2 1 4 4 H 1.48494 * 109.47265 * 240.00487 * 3 2 1 5 5 H 1.48502 * 109.46893 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46946 * 120.00156 * 3 2 1 7 7 C 1.38819 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99336 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99919 * 359.97438 * 7 2 1 10 10 C 1.46876 * 125.36988 * 359.97323 * 9 7 2 11 11 C 1.54195 * 106.39468 * 197.86663 * 10 9 7 12 12 H 1.09000 * 109.65109 * 89.90721 * 11 10 9 13 13 O 1.40791 * 110.22760 * 210.33805 * 11 10 9 14 14 C 1.41320 * 118.40068 * 67.70042 * 13 11 10 15 15 C 1.51787 * 111.63531 * 56.76770 * 14 13 11 16 16 N 1.44958 * 111.99662 * 319.67081 * 15 14 13 17 17 C 1.34777 * 117.32252 * 203.53802 * 16 15 14 18 18 O 1.21281 * 120.00101 * 176.30961 * 17 16 15 19 19 C 1.50701 * 119.99997 * 356.58683 * 17 16 15 20 20 C 1.50694 * 109.47164 * 179.72218 * 19 17 16 21 21 C 1.41383 * 126.58082 * 269.71369 * 20 19 17 22 22 C 1.34511 * 106.84141 * 179.83249 * 21 20 19 23 23 O 1.34300 * 108.42268 * 0.43137 * 22 21 20 24 24 C 1.34310 * 109.47242 * 359.71931 * 23 22 21 25 25 C 1.44546 * 125.35136 * 23.26014 * 16 15 14 26 26 H 1.08998 * 109.48662 * 106.14054 * 25 16 15 27 27 C 1.46794 * 125.35917 * 180.02562 * 9 7 2 28 28 H 0.97008 * 119.99460 * 359.97438 * 1 2 3 29 29 H 1.09000 * 110.06900 * 317.09874 * 10 9 7 30 30 H 1.08995 * 110.06632 * 78.63297 * 10 9 7 31 31 H 1.08998 * 109.06540 * 177.47263 * 14 13 11 32 32 H 1.09003 * 109.06867 * 296.48587 * 14 13 11 33 33 H 1.09000 * 109.07519 * 198.92735 * 15 14 13 34 34 H 1.09001 * 108.79939 * 80.23011 * 15 14 13 35 35 H 1.09003 * 109.46940 * 299.72193 * 19 17 16 36 36 H 1.08997 * 109.47057 * 59.72079 * 19 17 16 37 37 H 1.08000 * 126.57572 * 359.97438 * 21 20 19 38 38 H 1.07999 * 125.79075 * 180.11326 * 22 21 20 39 39 H 1.08008 * 125.78613 * 179.97438 * 24 23 22 40 40 H 1.08994 * 109.82866 * 59.33480 * 27 9 7 41 41 H 1.09003 * 109.89728 * 298.40493 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3253 -2.3881 -0.0005 10 6 -0.1370 -2.5254 0.0006 11 6 -0.4384 -3.9680 0.4540 12 1 -0.5370 -3.9981 1.5391 13 8 -1.6326 -4.4242 -0.1358 14 6 -1.6547 -4.6341 -1.5332 15 6 -0.5780 -5.6109 -1.9695 16 7 0.6682 -5.3977 -1.2605 17 6 1.7992 -5.8275 -1.8543 18 8 2.8748 -5.6145 -1.3361 19 6 1.7276 -6.5672 -3.1653 20 6 3.1199 -6.9283 -3.6149 21 6 3.9709 -6.1478 -4.4307 22 6 5.1130 -6.8427 -4.5795 23 8 4.9959 -8.0003 -3.9088 24 6 3.7892 -8.0577 -3.3218 25 6 0.7979 -4.7567 0.0286 26 1 1.0098 -5.5086 0.7888 27 6 1.9372 -3.7224 -0.0005 28 1 -0.4850 0.8402 0.0004 29 1 -0.5789 -1.8139 0.6982 30 1 -0.5290 -2.3589 -1.0028 31 1 -2.6307 -5.0264 -1.8189 32 1 -1.4918 -3.6823 -2.0389 33 1 -0.4025 -5.4934 -3.0388 34 1 -0.9261 -6.6260 -1.7779 35 1 1.1397 -7.4762 -3.0379 36 1 1.2568 -5.9321 -3.9156 37 1 3.7477 -5.1786 -4.8515 38 1 5.9756 -6.5260 -5.1468 39 1 3.4190 -8.8726 -2.7174 40 1 2.5666 -3.8405 0.8814 41 1 2.5350 -3.8564 -0.9021 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083058688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:23 Heat of formation + Delta-G solvation = -4.228310 kcal Electronic energy + Delta-G solvation = -26181.107974 eV Core-core repulsion = 22450.972036 eV Total energy + Delta-G solvation = -3730.135938 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.54621 -40.73564 -38.39621 -35.94661 -34.80848 -34.01427 -32.37194 -30.44500 -30.01647 -28.44086 -27.83560 -26.69993 -24.55621 -23.29643 -21.65966 -21.52249 -20.38086 -19.73280 -18.48455 -17.54715 -17.34777 -16.88811 -16.51201 -15.84634 -15.62783 -15.16399 -15.07863 -14.64427 -14.60488 -14.00000 -13.86328 -13.63448 -13.18121 -12.79556 -12.77669 -12.49811 -12.31210 -12.15817 -12.03281 -11.50277 -11.37388 -11.08728 -10.84115 -10.70976 -10.43599 -10.36041 -10.09260 -9.79913 -9.70504 -9.31537 -8.93827 -8.58630 -8.51181 -8.22091 -6.77729 -5.65910 -3.03872 1.77384 2.53150 2.81663 3.11785 3.21334 3.42593 3.46288 3.48062 4.09218 4.50659 4.65625 4.72971 4.73593 4.85457 4.96032 5.11373 5.17159 5.31951 5.34278 5.43357 5.45889 5.57634 5.64594 5.71277 5.75453 5.85660 5.93572 5.99618 6.12591 6.14519 6.25783 6.47073 6.58833 6.85965 7.09988 7.19013 7.37687 7.50345 7.62776 7.74338 7.89342 8.31299 8.43136 9.24324 9.84763 10.47668 11.40888 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.014207 B = 0.004736 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.404224 B = 5911.276196 C = 7317.172299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.925 5.925 2 C -0.011 4.011 3 Si 0.914 3.086 4 H -0.286 1.286 5 H -0.290 1.290 6 H -0.285 1.285 7 C -0.220 4.220 8 H 0.078 0.922 9 N -0.603 5.603 10 C 0.141 3.859 11 C 0.067 3.933 12 H 0.113 0.887 13 O -0.370 6.370 14 C 0.057 3.943 15 C 0.077 3.923 16 N -0.590 5.590 17 C 0.505 3.495 18 O -0.515 6.515 19 C -0.070 4.070 20 C -0.159 4.159 21 C -0.196 4.196 22 C -0.046 4.046 23 O -0.179 6.179 24 C -0.031 4.031 25 C 0.113 3.887 26 H 0.068 0.932 27 C 0.124 3.876 28 H 0.252 0.748 29 H 0.098 0.902 30 H 0.021 0.979 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.146 0.854 38 H 0.201 0.799 39 H 0.198 0.802 40 H 0.031 0.969 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.454 -16.541 -8.408 18.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.206 4.206 3 Si 0.745 3.255 4 H -0.213 1.213 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.348 4.348 8 H 0.096 0.904 9 N -0.331 5.331 10 C 0.015 3.985 11 C 0.008 3.992 12 H 0.130 0.870 13 O -0.287 6.287 14 C -0.020 4.020 15 C -0.046 4.046 16 N -0.325 5.325 17 C 0.292 3.708 18 O -0.390 6.390 19 C -0.110 4.110 20 C -0.161 4.161 21 C -0.215 4.215 22 C -0.113 4.113 23 O -0.074 6.074 24 C -0.098 4.098 25 C 0.008 3.992 26 H 0.086 0.914 27 C -0.002 4.002 28 H 0.063 0.937 29 H 0.116 0.884 30 H 0.039 0.961 31 H 0.121 0.879 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.083 0.917 35 H 0.117 0.883 36 H 0.119 0.881 37 H 0.164 0.836 38 H 0.217 0.783 39 H 0.215 0.785 40 H 0.049 0.951 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.094 -16.442 -7.970 18.273 hybrid contribution 0.451 1.173 -0.271 1.286 sum 0.545 -15.269 -8.241 17.360 Atomic orbital electron populations 1.69860 1.04828 1.24938 1.57723 1.24784 0.95746 0.97656 1.02452 0.86150 0.78396 0.83030 0.77935 1.21283 1.21574 1.21109 1.19033 0.90519 0.82251 1.43030 0.90448 1.44266 1.01296 1.00253 1.87312 1.22039 0.85370 0.90695 1.00349 1.23073 0.82066 0.96195 0.97838 0.86982 1.86851 1.34706 1.86426 1.20739 1.22191 0.98068 0.98335 0.83427 1.21626 0.85797 1.00239 0.96965 1.46718 1.06618 1.58867 1.20303 1.20576 0.83888 0.79791 0.86504 1.90694 1.28314 1.54780 1.65201 1.20076 0.94113 1.01248 0.95542 1.19806 0.97423 0.95767 1.03077 1.21706 0.94549 1.01744 1.03514 1.23922 1.00753 0.85647 1.01007 1.84041 1.33643 1.37101 1.52659 1.23721 0.83723 1.01055 1.01345 1.21560 0.98645 0.95321 0.83626 0.91378 1.21802 0.93369 0.84027 1.00968 0.93724 0.88410 0.96139 0.87874 0.92323 0.90043 0.91723 0.88276 0.88067 0.83593 0.78276 0.78485 0.95126 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.27 10.18 55.49 0.56 -26.70 16 2 C -0.01 -0.32 5.48 -17.43 -0.10 -0.41 16 3 Si 0.91 22.57 29.55 -169.99 -5.02 17.55 16 4 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 6 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 7 C -0.22 -6.36 10.25 -15.06 -0.15 -6.51 16 8 H 0.08 2.20 7.83 -52.49 -0.41 1.79 16 9 N -0.60 -16.06 3.39 -171.41 -0.58 -16.64 16 10 C 0.14 3.47 5.26 -3.21 -0.02 3.45 16 11 C 0.07 1.32 3.91 -26.27 -0.10 1.22 16 12 H 0.11 2.10 8.14 -51.93 -0.42 1.68 16 13 O -0.37 -6.50 10.25 -34.36 -0.35 -6.85 16 14 C 0.06 0.80 6.73 36.54 0.25 1.04 16 15 C 0.08 0.95 5.86 -5.48 -0.03 0.91 16 16 N -0.59 -9.55 3.09 -169.11 -0.52 -10.07 16 17 C 0.50 8.19 7.04 -10.99 -0.08 8.11 16 18 O -0.51 -10.39 13.05 5.56 0.07 -10.32 16 19 C -0.07 -0.81 4.79 -29.04 -0.14 -0.95 16 20 C -0.16 -2.03 4.66 -104.75 -0.49 -2.52 16 21 C -0.20 -2.50 10.87 -39.70 -0.43 -2.93 16 22 C -0.05 -0.52 12.09 29.41 0.36 -0.17 16 23 O -0.18 -2.21 10.65 5.70 0.06 -2.15 16 24 C -0.03 -0.36 12.01 29.41 0.35 -0.01 16 25 C 0.11 2.15 3.34 -68.66 -0.23 1.92 16 26 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 27 C 0.12 2.88 6.06 -3.41 -0.02 2.86 16 28 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.10 2.71 6.25 -51.93 -0.32 2.39 16 30 H 0.02 0.55 6.47 -51.93 -0.34 0.21 16 31 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 32 H 0.06 0.94 6.73 -51.93 -0.35 0.59 16 33 H 0.08 0.80 6.32 -51.93 -0.33 0.48 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 0.84 8.09 -51.93 -0.42 0.42 16 36 H 0.10 1.03 7.10 -51.93 -0.37 0.66 16 37 H 0.15 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.20 1.50 8.06 -52.49 -0.42 1.08 16 39 H 0.20 1.67 8.06 -52.48 -0.42 1.24 16 40 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 1.56 5.18 -51.93 -0.27 1.29 16 LS Contribution 327.02 15.07 4.93 4.93 Total: -1.00 -35.08 327.02 -7.01 -42.09 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.32 Total: 2.14 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -0.83 Total: 6.02 kcal Atomic # 7 Polarization: -52.88 SS G_CDS: -0.54 Total: -53.41 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.22 Total: -19.32 kcal Atomic # 14 Polarization: 22.57 SS G_CDS: -5.02 Total: 17.55 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -35.08 -7.01 -42.09 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083058688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.866 kcal (2) G-P(sol) polarization free energy of solvation -35.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.011 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.228 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds