Wall clock time and date at job start Tue Mar 31 2020 08:41:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86798 * 120.00458 * 2 1 4 4 H 1.48494 * 109.47265 * 240.00487 * 3 2 1 5 5 H 1.48502 * 109.46893 * 0.02562 * 3 2 1 6 6 H 1.48497 * 109.46946 * 120.00156 * 3 2 1 7 7 C 1.38819 * 119.99356 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99336 * 179.97438 * 7 2 1 9 9 N 1.36934 * 119.99919 * 359.97438 * 7 2 1 10 10 C 1.46876 * 125.36988 * 359.97323 * 9 7 2 11 11 C 1.54195 * 106.39468 * 197.86663 * 10 9 7 12 12 H 1.09000 * 109.65109 * 89.90721 * 11 10 9 13 13 O 1.40791 * 110.22760 * 210.33805 * 11 10 9 14 14 C 1.41320 * 118.40068 * 67.70042 * 13 11 10 15 15 C 1.51787 * 111.63531 * 56.76770 * 14 13 11 16 16 N 1.44958 * 111.99662 * 319.67081 * 15 14 13 17 17 C 1.34777 * 117.32252 * 203.53802 * 16 15 14 18 18 O 1.21281 * 120.00101 * 176.30961 * 17 16 15 19 19 C 1.50701 * 119.99997 * 356.58683 * 17 16 15 20 20 C 1.50694 * 109.47164 * 179.72218 * 19 17 16 21 21 C 1.41383 * 126.58082 * 269.71369 * 20 19 17 22 22 C 1.34511 * 106.84141 * 179.83249 * 21 20 19 23 23 O 1.34300 * 108.42268 * 0.43137 * 22 21 20 24 24 C 1.34310 * 109.47242 * 359.71931 * 23 22 21 25 25 C 1.44546 * 125.35136 * 23.26014 * 16 15 14 26 26 H 1.08998 * 109.48662 * 106.14054 * 25 16 15 27 27 C 1.46794 * 125.35917 * 180.02562 * 9 7 2 28 28 H 0.97008 * 119.99460 * 359.97438 * 1 2 3 29 29 H 1.09000 * 110.06900 * 317.09874 * 10 9 7 30 30 H 1.08995 * 110.06632 * 78.63297 * 10 9 7 31 31 H 1.08998 * 109.06540 * 177.47263 * 14 13 11 32 32 H 1.09003 * 109.06867 * 296.48587 * 14 13 11 33 33 H 1.09000 * 109.07519 * 198.92735 * 15 14 13 34 34 H 1.09001 * 108.79939 * 80.23011 * 15 14 13 35 35 H 1.09003 * 109.46940 * 299.72193 * 19 17 16 36 36 H 1.08997 * 109.47057 * 59.72079 * 19 17 16 37 37 H 1.08000 * 126.57572 * 359.97438 * 21 20 19 38 38 H 1.07999 * 125.79075 * 180.11326 * 22 21 20 39 39 H 1.08008 * 125.78613 * 179.97438 * 24 23 22 40 40 H 1.08994 * 109.82866 * 59.33480 * 27 9 7 41 41 H 1.09003 * 109.89728 * 298.40493 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6962 1.2125 7 6 2.0102 -1.2023 -0.0005 8 1 3.0901 -1.2023 -0.0010 9 7 1.3253 -2.3881 -0.0005 10 6 -0.1370 -2.5254 0.0006 11 6 -0.4384 -3.9680 0.4540 12 1 -0.5370 -3.9981 1.5391 13 8 -1.6326 -4.4242 -0.1358 14 6 -1.6547 -4.6341 -1.5332 15 6 -0.5780 -5.6109 -1.9695 16 7 0.6682 -5.3977 -1.2605 17 6 1.7992 -5.8275 -1.8543 18 8 2.8748 -5.6145 -1.3361 19 6 1.7276 -6.5672 -3.1653 20 6 3.1199 -6.9283 -3.6149 21 6 3.9709 -6.1478 -4.4307 22 6 5.1130 -6.8427 -4.5795 23 8 4.9959 -8.0003 -3.9088 24 6 3.7892 -8.0577 -3.3218 25 6 0.7979 -4.7567 0.0286 26 1 1.0098 -5.5086 0.7888 27 6 1.9372 -3.7224 -0.0005 28 1 -0.4850 0.8402 0.0004 29 1 -0.5789 -1.8139 0.6982 30 1 -0.5290 -2.3589 -1.0028 31 1 -2.6307 -5.0264 -1.8189 32 1 -1.4918 -3.6823 -2.0389 33 1 -0.4025 -5.4934 -3.0388 34 1 -0.9261 -6.6260 -1.7779 35 1 1.1397 -7.4762 -3.0379 36 1 1.2568 -5.9321 -3.9156 37 1 3.7477 -5.1786 -4.8515 38 1 5.9756 -6.5260 -5.1468 39 1 3.4190 -8.8726 -2.7174 40 1 2.5666 -3.8405 0.8814 41 1 2.5350 -3.8564 -0.9021 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083058688.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:41:23 Heat of formation + Delta-G solvation = -29.319810 kcal Electronic energy + Delta-G solvation = -26182.196023 eV Core-core repulsion = 22450.972036 eV Total energy + Delta-G solvation = -3731.223987 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.42940 -42.09950 -39.76852 -37.68504 -36.11819 -35.05989 -34.23088 -31.77185 -31.32524 -29.63079 -29.49108 -28.11979 -26.44413 -24.65604 -23.02322 -22.47071 -21.88339 -20.98270 -19.83671 -19.15036 -18.40050 -18.26671 -18.07661 -16.97233 -16.88743 -16.68776 -16.40496 -16.14928 -15.68115 -15.53847 -15.26095 -14.98532 -14.56895 -14.39991 -13.96835 -13.74295 -13.66732 -13.49751 -13.34442 -13.07486 -12.84029 -12.79281 -12.43946 -12.27970 -12.16811 -12.12072 -11.85714 -11.67613 -10.89697 -10.78494 -10.66196 -10.29754 -9.54157 -9.39822 -8.91539 -7.85860 -5.27810 0.90316 1.41769 1.45373 1.51941 1.53906 1.63129 2.02447 2.34279 2.44781 2.77742 3.26030 3.40245 3.64893 3.72748 3.80581 3.90695 3.95106 4.00623 4.09611 4.19076 4.26217 4.38836 4.42066 4.48546 4.55179 4.63556 4.74785 4.82951 4.88997 5.00954 5.06790 5.13633 5.32394 5.35891 5.46298 5.58602 5.63838 5.66451 6.18435 6.21686 6.28816 6.44639 7.04657 7.20273 7.71035 8.32420 9.18158 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.014207 B = 0.004736 C = 0.003826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1970.404224 B = 5911.276196 C = 7317.172299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.946 5.946 2 C -0.059 4.059 3 Si 0.981 3.019 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.247 4.247 8 H 0.072 0.928 9 N -0.622 5.622 10 C 0.151 3.849 11 C 0.086 3.914 12 H 0.120 0.880 13 O -0.373 6.373 14 C 0.047 3.953 15 C 0.072 3.928 16 N -0.596 5.596 17 C 0.499 3.501 18 O -0.564 6.564 19 C -0.058 4.058 20 C -0.183 4.183 21 C -0.227 4.227 22 C -0.045 4.045 23 O -0.189 6.189 24 C -0.033 4.033 25 C 0.125 3.875 26 H 0.083 0.917 27 C 0.126 3.874 28 H 0.249 0.751 29 H 0.062 0.938 30 H -0.005 1.005 31 H 0.149 0.851 32 H 0.028 0.972 33 H 0.110 0.890 34 H 0.107 0.893 35 H 0.141 0.859 36 H 0.117 0.883 37 H 0.144 0.856 38 H 0.231 0.769 39 H 0.227 0.773 40 H 0.018 0.982 41 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.138 -18.520 -9.430 20.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.595 5.595 2 C -0.252 4.252 3 Si 0.809 3.191 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.376 4.376 8 H 0.090 0.910 9 N -0.349 5.349 10 C 0.026 3.974 11 C 0.027 3.973 12 H 0.138 0.862 13 O -0.290 6.290 14 C -0.029 4.029 15 C -0.050 4.050 16 N -0.330 5.330 17 C 0.289 3.711 18 O -0.442 6.442 19 C -0.097 4.097 20 C -0.184 4.184 21 C -0.246 4.246 22 C -0.112 4.112 23 O -0.085 6.085 24 C -0.100 4.100 25 C 0.020 3.980 26 H 0.101 0.899 27 C 0.000 4.000 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.013 0.987 31 H 0.167 0.833 32 H 0.047 0.953 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.159 0.841 36 H 0.135 0.865 37 H 0.162 0.838 38 H 0.247 0.753 39 H 0.244 0.756 40 H 0.036 0.964 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -0.619 -18.456 -9.017 20.550 hybrid contribution 0.664 1.799 -0.008 1.917 sum 0.045 -16.657 -9.025 18.944 Atomic orbital electron populations 1.70104 1.06053 1.25379 1.57933 1.25621 0.96708 1.00815 1.02074 0.85123 0.77223 0.78644 0.78151 1.20685 1.21235 1.20237 1.19323 0.90717 0.83799 1.43744 0.91031 1.44527 1.02328 1.00961 1.87126 1.21780 0.84132 0.93564 0.97973 1.22695 0.83342 0.92861 0.98437 0.86209 1.86855 1.33291 1.85923 1.22944 1.22576 1.01338 0.97894 0.81121 1.21985 0.83344 1.01653 0.98019 1.46881 1.08420 1.58207 1.19463 1.21452 0.82961 0.79152 0.87552 1.90671 1.30073 1.56788 1.66708 1.20119 0.94326 1.02545 0.92703 1.20090 0.98358 0.96293 1.03685 1.21958 0.95714 1.02244 1.04725 1.24528 1.01295 0.85016 1.00362 1.84051 1.34118 1.37494 1.52842 1.24330 0.83218 1.01642 1.00849 1.21230 0.96209 0.94491 0.86104 0.89875 1.21810 0.94756 0.83945 0.99464 0.94111 0.92019 0.98750 0.83338 0.95321 0.87248 0.87552 0.84139 0.86485 0.83826 0.75292 0.75626 0.96424 0.93681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.53 10.18 21.65 0.22 -57.31 16 2 C -0.06 -3.47 5.48 84.86 0.47 -3.01 16 3 Si 0.98 47.22 29.55 68.60 2.03 49.25 16 4 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 5 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.25 -14.81 10.25 84.04 0.86 -13.94 16 8 H 0.07 4.23 7.83 -2.91 -0.02 4.21 16 9 N -0.62 -34.42 3.39 -696.22 -2.36 -36.78 16 10 C 0.15 7.72 5.26 86.71 0.46 8.18 16 11 C 0.09 3.38 3.91 30.90 0.12 3.50 16 12 H 0.12 4.46 8.14 -2.39 -0.02 4.44 16 13 O -0.37 -12.49 10.25 -145.88 -1.50 -13.99 16 14 C 0.05 1.19 6.73 71.58 0.48 1.68 16 15 C 0.07 1.47 5.86 86.27 0.51 1.98 16 16 N -0.60 -18.05 3.09 -807.34 -2.50 -20.55 16 17 C 0.50 15.37 7.04 87.66 0.62 15.99 16 18 O -0.56 -22.82 13.05 -3.03 -0.04 -22.86 16 19 C -0.06 -1.16 4.79 29.10 0.14 -1.02 16 20 C -0.18 -4.34 4.66 -19.95 -0.09 -4.44 16 21 C -0.23 -5.65 10.87 22.19 0.24 -5.41 16 22 C -0.05 -0.97 12.09 66.97 0.81 -0.16 16 23 O -0.19 -4.40 10.65 -2.52 -0.03 -4.43 16 24 C -0.03 -0.71 12.01 66.97 0.80 0.10 16 25 C 0.13 4.70 3.34 45.56 0.15 4.85 16 26 H 0.08 2.90 8.14 -2.39 -0.02 2.88 16 27 C 0.13 6.02 6.06 86.63 0.52 6.54 16 28 H 0.25 14.67 8.31 -92.70 -0.77 13.90 16 29 H 0.06 3.59 6.25 -2.39 -0.01 3.57 16 30 H -0.01 -0.30 6.47 -2.39 -0.02 -0.31 16 31 H 0.15 2.42 8.14 -2.39 -0.02 2.40 16 32 H 0.03 0.90 6.73 -2.39 -0.02 0.88 16 33 H 0.11 1.67 6.32 -2.39 -0.02 1.65 16 34 H 0.11 1.42 8.14 -2.39 -0.02 1.41 16 35 H 0.14 1.64 8.09 -2.39 -0.02 1.62 16 36 H 0.12 1.98 7.10 -2.39 -0.02 1.97 16 37 H 0.14 3.47 8.06 -2.91 -0.02 3.45 16 38 H 0.23 3.08 8.06 -2.91 -0.02 3.06 16 39 H 0.23 3.12 8.06 -2.91 -0.02 3.10 16 40 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.05 2.35 5.18 -2.39 -0.01 2.34 16 Total: -1.00 -80.87 327.02 2.97 -77.90 By element: Atomic # 1 Polarization: 12.87 SS G_CDS: 1.05 Total: 13.92 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 6.09 Total: 14.84 kcal Atomic # 7 Polarization: -110.00 SS G_CDS: -4.64 Total: -114.63 kcal Atomic # 8 Polarization: -39.71 SS G_CDS: -1.56 Total: -41.27 kcal Atomic # 14 Polarization: 47.22 SS G_CDS: 2.03 Total: 49.25 kcal Total: -80.87 2.97 -77.90 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083058688.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.578 kcal (2) G-P(sol) polarization free energy of solvation -80.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.898 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds