Wall clock time and date at job start Tue Mar 31 2020 09:42:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.35136 * 126.43854 * 2 1 4 4 O 1.33935 * 108.76388 * 179.97438 * 3 2 1 5 5 C 1.34912 * 109.38758 * 359.97438 * 4 3 2 6 6 C 1.46650 * 125.98735 * 180.02562 * 5 4 3 7 7 O 1.21693 * 120.00042 * 173.13004 * 6 5 4 8 8 N 1.34781 * 120.00361 * 353.12567 * 6 5 4 9 9 C 1.44959 * 117.32082 * 3.66471 * 8 6 5 10 10 C 1.51776 * 111.99682 * 203.54278 * 9 8 6 11 11 O 1.41315 * 111.63324 * 319.66910 * 10 9 8 12 12 C 1.40782 * 118.40238 * 56.76899 * 11 10 9 13 13 H 1.09000 * 109.35258 * 188.30990 * 12 11 10 14 14 C 1.54202 * 110.22614 * 67.70326 * 12 11 10 15 15 N 1.46875 * 106.39197 * 210.33871 * 14 12 11 16 16 C 1.36941 * 125.36388 * 197.81804 * 15 14 12 17 17 H 1.08000 * 119.99777 * 180.02562 * 16 15 14 18 18 C 1.38815 * 120.00032 * 0.02778 * 16 15 14 19 19 N 1.31613 * 119.99654 * 359.97438 * 18 16 15 20 20 Si 1.86794 * 120.00016 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47259 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.47144 * 119.99537 * 20 18 16 23 23 H 1.48495 * 109.47381 * 239.99858 * 20 18 16 24 24 C 1.46783 * 109.27156 * 17.83860 * 15 14 12 25 25 C 1.44540 * 117.32610 * 183.92300 * 8 6 5 26 26 H 1.08998 * 109.48672 * 285.85703 * 25 8 6 27 27 C 1.36543 * 108.02204 * 0.02562 * 5 4 3 28 28 H 1.08999 * 109.47218 * 269.99966 * 1 2 3 29 29 H 1.08998 * 109.47354 * 30.00315 * 1 2 3 30 30 H 1.09005 * 109.46971 * 150.00590 * 1 2 3 31 31 H 1.07994 * 125.62162 * 359.97438 * 3 2 1 32 32 H 1.09005 * 108.99852 * 324.33152 * 9 8 6 33 33 H 1.09003 * 108.99799 * 83.08969 * 9 8 6 34 34 H 1.09002 * 109.15219 * 199.01856 * 10 9 8 35 35 H 1.08996 * 108.82556 * 80.10115 * 10 9 8 36 36 H 1.09004 * 110.07246 * 91.10756 * 14 12 11 37 37 H 1.08997 * 110.11636 * 329.59505 * 14 12 11 38 38 H 0.97006 * 119.99945 * 180.02562 * 19 18 16 39 39 H 1.08998 * 109.83133 * 239.35634 * 24 15 14 40 40 H 1.09004 * 109.82807 * 118.39042 * 24 15 14 41 41 H 1.08001 * 126.64808 * 179.74033 * 27 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3096 1.0872 0.0000 4 8 3.5857 0.6805 0.0006 5 6 3.6261 -0.6680 0.0015 6 6 4.8379 -1.4939 0.0029 7 8 4.7514 -2.7011 0.1297 8 7 6.0475 -0.9159 -0.1364 9 6 6.0898 0.5316 -0.2015 10 6 7.3371 1.0328 -0.9063 11 8 8.4777 0.2814 -0.5439 12 6 8.4547 -1.1114 -0.7481 13 1 9.3357 -1.5586 -0.2876 14 6 8.4409 -1.4288 -2.2571 15 7 7.7085 -2.6929 -2.4080 16 6 7.7517 -3.5075 -3.5080 17 1 7.1755 -4.4207 -3.5265 18 6 8.5362 -3.1594 -4.5990 19 7 9.2380 -2.0462 -4.5765 20 14 8.5957 -4.2709 -6.0991 21 1 7.7241 -5.4521 -5.8749 22 1 8.1186 -3.5220 -7.2894 23 1 9.9920 -4.7226 -6.3255 24 6 6.9224 -2.9453 -1.1943 25 6 7.1957 -1.7905 -0.2144 26 1 7.4115 -2.1963 0.7740 27 6 2.3408 -1.1291 0.0010 28 1 -0.3633 0.0000 1.0276 29 1 -0.3634 0.8899 -0.5139 30 1 -0.3633 -0.8901 -0.5138 31 1 1.9770 2.1146 -0.0004 32 1 5.2101 0.8885 -0.7373 33 1 6.0734 0.9330 0.8118 34 1 7.5008 2.0779 -0.6434 35 1 7.1874 0.9559 -1.9832 36 1 9.4608 -1.5412 -2.6251 37 1 7.9321 -0.6342 -2.8026 38 1 9.7859 -1.8027 -5.3390 39 1 7.2277 -3.8907 -0.7460 40 1 5.8612 -2.9774 -1.4412 41 1 2.0266 -2.1624 -0.0025 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083170921.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:42:34 Heat of formation + Delta-G solvation = -26.907918 kcal Electronic energy + Delta-G solvation = -26372.290666 eV Core-core repulsion = 22641.171266 eV Total energy + Delta-G solvation = -3731.119400 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.83527 -42.05787 -39.79320 -37.71487 -36.44823 -35.10416 -34.37105 -31.88154 -31.58045 -29.64920 -29.24681 -28.07399 -26.67898 -24.81562 -24.48071 -22.49427 -22.14978 -21.02823 -20.16259 -19.14167 -18.67643 -18.36925 -17.82139 -17.49614 -16.92585 -16.48104 -16.40957 -16.16667 -15.73990 -15.56024 -15.09742 -14.64492 -14.42565 -14.20624 -14.12562 -14.02711 -13.89758 -13.64012 -13.54911 -13.09758 -12.88789 -12.77421 -12.53019 -12.36264 -12.22054 -12.10595 -11.91305 -11.77754 -11.20360 -10.81645 -10.73358 -10.60871 -9.79134 -9.51769 -8.95787 -7.86662 -5.29381 -0.01968 1.31929 1.42999 1.44258 1.46354 1.55436 1.89631 2.01820 2.44013 2.72140 3.20793 3.27173 3.53373 3.65808 3.71012 3.80063 3.85712 4.01997 4.05259 4.13358 4.25468 4.32298 4.42453 4.45784 4.63592 4.68216 4.78847 4.88899 4.89600 4.93728 4.96536 5.04472 5.10935 5.34499 5.44646 5.45060 5.52501 5.64271 5.80708 6.07188 6.17054 6.35010 6.82202 7.04215 7.68519 8.29983 9.18018 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.016456 B = 0.004567 C = 0.004037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.102245 B = 6129.429282 C = 6933.364219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.206 4.206 3 C 0.003 3.997 4 O -0.157 6.157 5 C -0.102 4.102 6 C 0.586 3.414 7 O -0.548 6.548 8 N -0.584 5.584 9 C 0.071 3.929 10 C 0.054 3.946 11 O -0.370 6.370 12 C 0.086 3.914 13 H 0.130 0.870 14 C 0.150 3.850 15 N -0.621 5.621 16 C -0.247 4.247 17 H 0.076 0.924 18 C -0.059 4.059 19 N -0.946 5.946 20 Si 0.983 3.017 21 H -0.270 1.270 22 H -0.290 1.290 23 H -0.285 1.285 24 C 0.130 3.870 25 C 0.120 3.880 26 H 0.094 0.906 27 C -0.122 4.122 28 H 0.079 0.921 29 H 0.088 0.912 30 H 0.064 0.936 31 H 0.257 0.743 32 H 0.109 0.891 33 H 0.095 0.905 34 H 0.151 0.849 35 H 0.032 0.968 36 H 0.067 0.933 37 H -0.006 1.006 38 H 0.250 0.750 39 H 0.033 0.967 40 H 0.033 0.967 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.076 11.858 12.071 22.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.207 4.207 3 C -0.066 4.066 4 O -0.053 6.053 5 C -0.153 4.153 6 C 0.376 3.624 7 O -0.428 6.428 8 N -0.316 5.316 9 C -0.051 4.051 10 C -0.022 4.022 11 O -0.287 6.287 12 C 0.027 3.973 13 H 0.148 0.852 14 C 0.024 3.976 15 N -0.349 5.349 16 C -0.375 4.375 17 H 0.093 0.907 18 C -0.252 4.252 19 N -0.595 5.595 20 Si 0.810 3.190 21 H -0.195 1.195 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.005 3.995 25 C 0.016 3.984 26 H 0.112 0.888 27 C -0.143 4.143 28 H 0.098 0.902 29 H 0.107 0.893 30 H 0.083 0.917 31 H 0.272 0.728 32 H 0.127 0.873 33 H 0.113 0.887 34 H 0.169 0.831 35 H 0.050 0.950 36 H 0.085 0.915 37 H 0.012 0.988 38 H 0.059 0.941 39 H 0.051 0.949 40 H 0.050 0.950 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -13.526 11.510 12.037 21.456 hybrid contribution -0.141 -1.091 -1.254 1.668 sum -13.667 10.419 10.783 20.288 Atomic orbital electron populations 1.20256 0.86466 1.03786 1.03230 1.20830 0.99187 0.91479 1.09178 1.25287 0.79288 1.01766 1.00252 1.84308 1.30011 1.20315 1.70708 1.21566 0.95193 0.81573 1.16960 1.17180 0.81985 0.86380 0.76895 1.90830 1.86264 1.14222 1.51492 1.46769 1.05674 1.07916 1.71200 1.22144 1.01041 0.78121 1.03773 1.22523 0.84200 0.97417 0.98095 1.86857 1.39348 1.17583 1.84869 1.22788 0.96669 0.81421 0.96449 0.85236 1.21819 0.97885 0.86432 0.91433 1.44525 1.52407 1.23246 1.14721 1.19427 1.23164 1.01880 0.93061 0.90654 1.25634 0.99233 0.99214 1.01113 1.70106 1.33407 1.25043 1.30919 0.84957 0.77439 0.77936 0.78648 1.19502 1.21638 1.21147 1.21682 0.95501 0.95534 0.86791 1.21420 0.86560 0.90718 0.99712 0.88829 1.22061 0.90810 1.01442 1.00007 0.90213 0.89272 0.91711 0.72772 0.87347 0.88663 0.83144 0.94954 0.91475 0.98827 0.94070 0.94899 0.94962 0.83056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.93 10.39 71.23 0.74 -0.19 16 2 C -0.21 -3.76 6.14 -20.06 -0.12 -3.88 16 3 C 0.00 0.04 12.00 67.10 0.81 0.85 16 4 O -0.16 -3.50 7.06 -5.06 -0.04 -3.54 16 5 C -0.10 -3.00 6.69 24.07 0.16 -2.84 16 6 C 0.59 21.50 6.84 86.44 0.59 22.09 16 7 O -0.55 -23.45 14.28 -4.33 -0.06 -23.52 16 8 N -0.58 -20.51 3.09 -812.09 -2.51 -23.02 16 9 C 0.07 1.91 5.40 86.27 0.47 2.38 16 10 C 0.05 1.55 6.73 71.58 0.48 2.03 16 11 O -0.37 -12.93 10.25 -145.82 -1.49 -14.42 16 12 C 0.09 3.43 3.91 30.90 0.12 3.55 16 13 H 0.13 4.76 8.14 -2.39 -0.02 4.74 16 14 C 0.15 7.69 5.26 86.72 0.46 8.15 16 15 N -0.62 -34.33 3.39 -696.22 -2.36 -36.69 16 16 C -0.25 -14.67 10.25 84.03 0.86 -13.81 16 17 H 0.08 4.40 7.83 -2.91 -0.02 4.38 16 18 C -0.06 -3.44 5.48 84.86 0.47 -2.98 16 19 N -0.95 -57.35 10.18 21.65 0.22 -57.13 16 20 Si 0.98 47.03 29.55 68.60 2.03 49.06 16 21 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 23 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 24 C 0.13 6.25 6.06 86.63 0.52 6.78 16 25 C 0.12 4.72 3.28 45.56 0.15 4.86 16 26 H 0.09 3.34 8.14 -2.39 -0.02 3.32 16 27 C -0.12 -3.21 10.58 22.39 0.24 -2.97 16 28 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.06 0.81 8.14 -2.38 -0.02 0.79 16 31 H 0.26 1.06 8.06 -2.91 -0.02 1.03 16 32 H 0.11 2.74 4.99 -3.31 -0.02 2.73 16 33 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 34 H 0.15 2.90 8.14 -2.39 -0.02 2.88 16 35 H 0.03 1.10 6.73 -2.39 -0.02 1.09 16 36 H 0.07 3.88 6.25 -2.38 -0.01 3.86 16 37 H -0.01 -0.34 6.48 -2.39 -0.02 -0.36 16 38 H 0.25 14.58 8.31 -92.70 -0.77 13.81 16 39 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.03 1.69 5.43 -2.38 -0.01 1.67 16 41 H 0.15 4.04 8.06 -2.91 -0.02 4.01 16 Total: -1.00 -76.47 325.39 2.77 -73.70 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 1.05 Total: 11.54 kcal Atomic # 6 Polarization: 18.09 SS G_CDS: 5.94 Total: 24.03 kcal Atomic # 7 Polarization: -112.20 SS G_CDS: -4.65 Total: -116.85 kcal Atomic # 8 Polarization: -39.89 SS G_CDS: -1.59 Total: -41.48 kcal Atomic # 14 Polarization: 47.03 SS G_CDS: 2.03 Total: 49.06 kcal Total: -76.47 2.77 -73.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083170921.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.788 kcal (2) G-P(sol) polarization free energy of solvation -76.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds