Wall clock time and date at job start Tue Mar 31 2020 09:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34676 * 117.00255 * 2 1 4 4 O 1.21433 * 120.00112 * 0.02562 * 3 2 1 5 5 C 1.48057 * 120.00458 * 180.02562 * 3 2 1 6 6 C 1.39199 * 119.69498 * 179.73009 * 5 3 2 7 7 C 1.38746 * 119.18254 * 180.27706 * 6 5 3 8 8 C 1.38368 * 118.55705 * 359.97438 * 7 6 5 9 9 C 1.50704 * 120.33868 * 180.02562 * 8 7 6 10 10 C 1.39264 * 119.31983 * 0.02562 * 8 7 6 11 11 O 1.35660 * 119.62038 * 180.02562 * 10 8 7 12 12 C 1.42899 * 117.00577 * 179.97438 * 11 10 8 13 13 H 1.08997 * 110.88184 * 26.11976 * 12 11 10 14 14 C 1.55157 * 111.00560 * 149.99919 * 12 11 10 15 15 C 1.54327 * 102.94128 * 153.57897 * 14 12 11 16 16 N 1.47029 * 107.26991 * 337.80822 * 15 14 12 17 17 C 1.36942 * 125.64657 * 178.98369 * 16 15 14 18 18 H 1.07999 * 119.99852 * 179.97438 * 17 16 15 19 19 C 1.38811 * 119.99944 * 359.97438 * 17 16 15 20 20 N 1.31618 * 119.99942 * 359.97438 * 19 17 16 21 21 Si 1.86794 * 119.99811 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.47407 * 59.99880 * 21 19 17 23 23 H 1.48504 * 109.47266 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47451 * 299.99786 * 21 19 17 25 25 C 1.47419 * 108.70400 * 358.94232 * 16 15 14 26 26 N 1.31908 * 120.76795 * 359.97438 * 10 8 7 27 27 H 1.09005 * 109.46876 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46296 * 299.99218 * 1 2 3 29 29 H 1.08990 * 109.47141 * 59.99504 * 1 2 3 30 30 H 1.07997 * 120.40936 * 0.25148 * 6 5 3 31 31 H 1.07994 * 120.72066 * 180.02562 * 7 6 5 32 32 H 1.08994 * 109.47219 * 269.97731 * 9 8 7 33 33 H 1.09000 * 109.47454 * 29.98274 * 9 8 7 34 34 H 1.09005 * 109.47079 * 149.98274 * 9 8 7 35 35 H 1.09001 * 110.71958 * 271.94165 * 14 12 11 36 36 H 1.08996 * 110.72031 * 35.22335 * 14 12 11 37 37 H 1.09001 * 109.88388 * 97.22142 * 15 14 12 38 38 H 1.09000 * 109.88845 * 218.23892 * 15 14 12 39 39 H 0.97004 * 120.00006 * 179.97438 * 20 19 17 40 40 H 1.09003 * 110.36688 * 265.28827 * 25 16 15 41 41 H 1.09001 * 110.36779 * 142.96887 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0635 1.1999 0.0000 4 8 1.4022 2.2184 0.0005 5 6 3.5420 1.2775 -0.0006 6 6 4.1673 2.5211 -0.0063 7 6 5.5535 2.5814 -0.0126 8 6 6.2671 1.3959 -0.0125 9 6 7.7740 1.4145 -0.0187 10 6 5.5785 0.1854 -0.0066 11 8 6.2720 -0.9805 -0.0059 12 6 5.5095 -2.1890 0.0008 13 1 4.5271 -2.0311 -0.4440 14 6 6.2707 -3.3309 -0.7231 15 6 5.7020 -4.6017 -0.0573 16 7 5.1585 -4.2039 1.2496 17 6 4.5445 -5.0375 2.1459 18 1 4.1780 -4.6465 3.0835 19 6 4.3930 -6.3851 1.8492 20 7 4.8392 -6.8614 0.7062 21 14 3.5561 -7.5223 3.0720 22 1 2.1694 -7.0510 3.3175 23 1 3.5206 -8.9011 2.5217 24 1 4.3133 -7.5192 4.3494 25 6 5.3850 -2.7591 1.4358 26 7 4.2597 0.1593 -0.0007 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3632 0.5137 0.8901 29 1 -0.3633 0.5139 -0.8899 30 1 3.5808 3.4279 -0.0062 31 1 6.0643 3.5328 -0.0167 32 1 8.1331 1.4160 -1.0477 33 1 8.1284 2.3103 0.4912 34 1 8.1504 0.5305 0.4962 35 1 6.0517 -3.3240 -1.7909 36 1 7.3435 -3.2510 -0.5478 37 1 4.9090 -5.0214 -0.6763 38 1 6.4956 -5.3368 0.0769 39 1 4.7337 -7.8032 0.4990 40 1 6.3061 -2.5882 1.9931 41 1 4.5387 -2.3059 1.9520 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001234417841.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:21:08 Heat of formation + Delta-G solvation = -72.462064 kcal Electronic energy + Delta-G solvation = -25227.345296 eV Core-core repulsion = 21494.250520 eV Total energy + Delta-G solvation = -3733.094776 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.16996 -41.22203 -39.71078 -37.92922 -37.55192 -34.94750 -34.29674 -32.34909 -31.10485 -29.69719 -29.12068 -27.94337 -26.63715 -24.83630 -24.09778 -22.44278 -22.13890 -21.75269 -19.74931 -19.26906 -18.83354 -17.86588 -17.59152 -17.20711 -16.78004 -16.60542 -16.19699 -15.93609 -15.72602 -14.92572 -14.81090 -14.55824 -14.29804 -14.20802 -14.10426 -13.84365 -13.50028 -13.40032 -13.30222 -13.07915 -12.93743 -12.73423 -12.61412 -12.19183 -12.09350 -12.08567 -11.90085 -11.88262 -11.65723 -11.53912 -10.82104 -10.74092 -10.71662 -9.53866 -8.96008 -7.87385 -5.24683 -0.63814 0.18780 1.21794 1.45517 1.49398 1.52103 1.55703 1.88420 2.49100 2.62377 2.89372 3.31406 3.61268 3.71289 3.75010 3.79053 3.83999 3.96122 4.07646 4.18542 4.19135 4.24265 4.27637 4.56380 4.63142 4.69661 4.70020 4.81681 4.85168 4.87830 4.93348 5.00568 5.12468 5.17604 5.20207 5.39871 5.48686 5.58287 5.68930 6.10603 6.17843 6.36346 6.72605 7.06249 7.70728 8.35112 9.22936 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.013279 B = 0.004311 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.042238 B = 6493.274999 C = 8094.891183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.354 6.354 3 C 0.523 3.477 4 O -0.514 6.514 5 C 0.089 3.911 6 C -0.126 4.126 7 C -0.040 4.040 8 C -0.114 4.114 9 C -0.105 4.105 10 C 0.296 3.704 11 O -0.290 6.290 12 C 0.093 3.907 13 H 0.087 0.913 14 C -0.123 4.123 15 C 0.188 3.812 16 N -0.622 5.622 17 C -0.249 4.249 18 H 0.079 0.921 19 C -0.060 4.060 20 N -0.949 5.949 21 Si 0.982 3.018 22 H -0.277 1.277 23 H -0.290 1.290 24 H -0.276 1.276 25 C 0.129 3.871 26 N -0.521 5.521 27 H 0.120 0.880 28 H 0.070 0.930 29 H 0.074 0.926 30 H 0.171 0.829 31 H 0.202 0.798 32 H 0.090 0.910 33 H 0.103 0.897 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.085 0.915 37 H 0.019 0.981 38 H 0.020 0.980 39 H 0.250 0.750 40 H 0.027 0.973 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.427 21.746 -4.093 22.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.367 3.633 4 O -0.403 6.403 5 C -0.045 4.045 6 C -0.147 4.147 7 C -0.065 4.065 8 C -0.117 4.117 9 C -0.162 4.162 10 C 0.114 3.886 11 O -0.197 6.197 12 C 0.035 3.965 13 H 0.105 0.895 14 C -0.161 4.161 15 C 0.063 3.937 16 N -0.349 5.349 17 C -0.378 4.378 18 H 0.097 0.903 19 C -0.253 4.253 20 N -0.597 5.597 21 Si 0.809 3.191 22 H -0.203 1.203 23 H -0.216 1.216 24 H -0.202 1.202 25 C 0.003 3.997 26 N -0.246 5.246 27 H 0.138 0.862 28 H 0.089 0.911 29 H 0.093 0.907 30 H 0.189 0.811 31 H 0.219 0.781 32 H 0.108 0.892 33 H 0.121 0.879 34 H 0.082 0.918 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.037 0.963 38 H 0.038 0.962 39 H 0.059 0.941 40 H 0.045 0.955 41 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 0.944 20.946 -4.078 21.360 hybrid contribution -0.788 -0.648 0.602 1.185 sum 0.156 20.297 -3.476 20.593 Atomic orbital electron populations 1.23630 0.74142 1.05595 1.03220 1.86734 1.25393 1.31965 1.82801 1.21066 0.88396 0.81639 0.72154 1.90797 1.66229 1.36240 1.47028 1.19807 0.89941 0.90093 1.04645 1.22224 0.96294 0.97183 0.98959 1.21861 0.91959 0.99110 0.93526 1.20720 0.99836 0.89690 1.01433 1.20776 0.86847 1.04494 1.04073 1.20076 0.86642 0.87680 0.94186 1.86236 1.34266 1.11999 1.87150 1.23309 0.95471 0.81004 0.96709 0.89538 1.22905 1.00630 0.92687 0.99916 1.20924 0.95400 0.92175 0.85180 1.44573 1.68637 1.03505 1.18213 1.19382 1.30624 0.89886 0.97904 0.90325 1.25657 1.02012 0.98210 0.99420 1.70150 1.52088 1.13396 1.24115 0.85114 0.78421 0.77507 0.78034 1.20327 1.21570 1.20227 1.21813 0.97880 0.84840 0.95174 1.67076 1.07868 1.32933 1.16768 0.86171 0.91081 0.90739 0.81109 0.78081 0.89185 0.87859 0.91758 0.89201 0.89680 0.96282 0.96206 0.94101 0.95485 0.94830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.60 10.56 113.37 1.20 1.79 16 2 O -0.35 -11.11 10.38 -55.86 -0.58 -11.69 16 3 C 0.52 15.74 7.95 70.43 0.56 16.30 16 4 O -0.51 -15.39 16.10 20.05 0.32 -15.07 16 5 C 0.09 2.53 6.74 41.83 0.28 2.81 16 6 C -0.13 -2.45 9.63 22.62 0.22 -2.23 16 7 C -0.04 -0.58 9.84 22.42 0.22 -0.36 16 8 C -0.11 -2.30 5.92 -19.59 -0.12 -2.41 16 9 C -0.11 -1.49 9.81 71.24 0.70 -0.79 16 10 C 0.30 8.83 7.47 84.93 0.63 9.47 16 11 O -0.29 -9.68 8.99 -89.76 -0.81 -10.49 16 12 C 0.09 3.63 3.35 31.99 0.11 3.74 16 13 H 0.09 3.65 6.94 -2.39 -0.02 3.63 16 14 C -0.12 -4.79 6.69 31.78 0.21 -4.58 16 15 C 0.19 9.62 5.37 86.73 0.47 10.09 16 16 N -0.62 -33.89 3.39 -691.97 -2.35 -36.24 16 17 C -0.25 -14.60 10.28 84.03 0.86 -13.73 16 18 H 0.08 4.44 7.83 -2.91 -0.02 4.41 16 19 C -0.06 -3.47 5.49 84.86 0.47 -3.00 16 20 N -0.95 -57.70 10.31 21.65 0.22 -57.48 16 21 Si 0.98 46.49 29.55 68.60 2.03 48.52 16 22 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 23 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 24 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 25 C 0.13 5.91 6.97 86.86 0.61 6.51 16 26 N -0.52 -17.23 8.37 -298.25 -2.50 -19.73 16 27 H 0.12 2.24 8.14 -2.38 -0.02 2.22 16 28 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.17 2.59 7.63 -2.91 -0.02 2.57 16 31 H 0.20 0.89 8.06 -2.91 -0.02 0.86 16 32 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.10 0.81 8.09 -2.39 -0.02 0.79 16 34 H 0.06 1.17 7.55 -2.38 -0.02 1.15 16 35 H 0.09 3.07 8.14 -2.39 -0.02 3.06 16 36 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 37 H 0.02 1.07 7.38 -2.39 -0.02 1.06 16 38 H 0.02 1.11 7.50 -2.39 -0.02 1.09 16 39 H 0.25 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.03 1.58 8.14 -2.39 -0.02 1.56 16 Total: -1.00 -74.73 348.91 3.79 -70.93 By element: Atomic # 1 Polarization: 6.60 SS G_CDS: 1.04 Total: 7.63 kcal Atomic # 6 Polarization: 17.19 SS G_CDS: 6.42 Total: 23.61 kcal Atomic # 7 Polarization: -108.82 SS G_CDS: -4.62 Total: -113.44 kcal Atomic # 8 Polarization: -36.19 SS G_CDS: -1.06 Total: -37.25 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 2.03 Total: 48.52 kcal Total: -74.73 3.79 -70.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001234417841.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.528 kcal (2) G-P(sol) polarization free energy of solvation -74.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds