Wall clock time and date at job start Tue Mar 31 2020 09:28:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.57534 * 2 1 4 4 C 1.53095 * 109.52571 * 239.83652 * 2 1 3 5 5 O 1.42896 * 109.41892 * 182.48851 * 4 2 1 6 6 C 1.42908 * 114.10072 * 61.15790 * 5 4 2 7 7 C 1.53095 * 109.41389 * 298.84415 * 6 5 4 8 8 C 1.53181 * 109.52195 * 120.15529 * 2 1 3 9 9 H 1.09002 * 109.54208 * 296.84246 * 8 2 1 10 10 N 1.46504 * 109.54521 * 57.01612 * 8 2 1 11 11 C 1.39671 * 120.00063 * 205.00092 * 10 8 2 12 12 C 1.38172 * 119.98967 * 5.54167 * 11 10 8 13 13 C 1.41140 * 119.50382 * 180.29154 * 12 11 10 14 14 C 1.40356 * 120.25145 * 179.72256 * 13 12 11 15 15 H 1.08006 * 119.99731 * 154.89147 * 14 13 12 16 16 C 1.46527 * 120.00304 * 334.89143 * 14 13 12 17 17 N 1.29513 * 119.99671 * 335.19912 * 16 14 13 18 18 Si 1.86792 * 120.00124 * 155.20259 * 16 14 13 19 19 H 1.48500 * 109.47423 * 179.97438 * 18 16 14 20 20 H 1.48507 * 109.47098 * 299.99852 * 18 16 14 21 21 H 1.48505 * 109.47353 * 59.99916 * 18 16 14 22 22 C 1.41334 * 119.49209 * 359.45264 * 13 12 11 23 23 C 1.36485 * 119.96280 * 0.27493 * 22 13 12 24 24 C 1.38661 * 120.50391 * 359.97438 * 23 22 13 25 25 N 1.48023 * 119.74125 * 180.02562 * 24 23 22 26 26 O 1.31695 * 119.99959 * 353.55757 * 25 24 23 27 27 O 1.31699 * 119.99464 * 173.55841 * 25 24 23 28 28 H 1.09005 * 109.46996 * 299.84530 * 1 2 3 29 29 H 1.08995 * 109.46980 * 59.84983 * 1 2 3 30 30 H 1.09005 * 109.47121 * 179.84748 * 1 2 3 31 31 H 1.09001 * 109.47815 * 302.47246 * 4 2 1 32 32 H 1.08995 * 109.47580 * 62.48912 * 4 2 1 33 33 H 1.09002 * 109.47907 * 58.82452 * 6 5 4 34 34 H 1.08998 * 109.48169 * 178.86425 * 6 5 4 35 35 H 1.09000 * 109.52481 * 297.70546 * 7 6 5 36 36 H 1.08995 * 109.52283 * 177.50914 * 7 6 5 37 37 H 0.96999 * 119.99595 * 25.00249 * 10 8 2 38 38 H 1.08003 * 120.24926 * 0.02562 * 12 11 10 39 39 H 0.96998 * 120.00116 * 354.47064 * 17 16 14 40 40 H 1.08000 * 120.01973 * 180.24939 * 22 13 12 41 41 H 1.08002 * 119.74976 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7250 -1.2475 5 8 3.4695 -0.7745 -1.2162 6 6 4.0044 -1.4817 -0.0955 7 6 3.5716 -0.7871 1.1983 8 6 2.0419 -0.7253 1.2484 9 1 1.7266 -0.1832 2.1400 10 7 1.4973 -2.0849 1.2832 11 6 1.3669 -2.7539 2.5023 12 6 1.6430 -2.0948 3.6848 13 6 1.5138 -2.7826 4.9105 14 6 1.7958 -2.1299 6.1207 15 1 1.3367 -2.4699 7.0373 16 6 2.7130 -0.9874 6.1406 17 7 3.6119 -0.8626 5.2167 18 14 2.5858 0.2888 7.4986 19 1 3.6195 1.3350 7.2932 20 1 1.2379 0.9114 7.4682 21 1 2.7993 -0.3655 8.8145 22 6 1.0928 -4.1317 4.9103 23 6 0.8202 -4.7605 3.7300 24 6 0.9524 -4.0856 2.5260 25 7 0.6518 -4.7838 1.2558 26 8 0.3841 -6.0732 1.2607 27 8 0.6522 -4.1154 0.1211 28 1 -0.3633 0.5115 0.8914 29 1 -0.3633 0.5161 -0.8886 30 1 -0.3634 -1.0277 -0.0027 31 1 1.6432 -1.7394 -1.2675 32 1 1.7158 -0.1888 -2.1388 33 1 3.6316 -2.5060 -0.1005 34 1 5.0926 -1.4904 -0.1569 35 1 3.9780 0.2240 1.2225 36 1 3.9416 -1.3500 2.0552 37 1 1.2273 -2.5204 0.4596 38 1 1.9594 -1.0622 3.6711 39 1 3.7314 -1.5647 4.5581 40 1 0.9871 -4.6650 5.8435 41 1 0.4983 -5.7915 3.7338 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001170826708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:43 Heat of formation + Delta-G solvation = -29.138633 kcal Electronic energy + Delta-G solvation = -26522.162971 eV Core-core repulsion = 22790.946840 eV Total energy + Delta-G solvation = -3731.216131 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.02471 -38.64332 -36.99540 -35.65979 -34.46055 -33.32381 -32.70924 -31.35618 -30.33114 -28.14427 -26.87364 -26.56676 -24.84192 -23.72723 -22.18087 -21.53051 -21.11805 -19.08241 -18.76180 -17.31449 -16.88248 -16.33585 -15.92657 -15.63258 -15.47766 -14.82185 -14.60313 -14.44178 -14.34174 -13.84801 -13.81864 -13.37602 -12.92093 -12.64975 -12.34410 -12.12098 -12.02164 -11.93160 -11.79003 -11.60657 -11.50851 -10.95011 -10.86821 -10.64543 -10.54961 -10.36434 -10.15219 -9.97134 -9.85447 -9.68785 -9.61449 -9.51531 -9.14998 -8.47036 -8.12037 -6.99904 -5.31832 0.70353 2.36521 2.57295 2.69276 2.73870 2.86788 2.95253 3.40139 3.81407 3.95099 4.04119 4.74398 4.77949 4.92626 4.99246 5.19265 5.35410 5.51403 5.56127 5.57508 5.67394 5.80908 5.87227 5.94102 6.00132 6.07271 6.10981 6.14348 6.16216 6.27639 6.33682 6.36701 6.46252 6.54650 6.79260 6.89399 6.96729 7.25661 7.30220 7.33017 7.41844 7.71005 7.93861 8.13932 8.20094 8.54949 9.08601 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.006502 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.374099 B = 4305.534515 C = 5953.162284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.130 4.130 3 H 0.087 0.913 4 C 0.062 3.938 5 O -0.385 6.385 6 C 0.062 3.938 7 C -0.166 4.166 8 C 0.149 3.851 9 H 0.084 0.916 10 N -0.726 5.726 11 C 0.304 3.696 12 C -0.321 4.321 13 C 0.106 3.894 14 C -0.414 4.414 15 H 0.100 0.900 16 C 0.025 3.975 17 N -0.713 5.713 18 Si 1.074 2.926 19 H -0.265 1.265 20 H -0.265 1.265 21 H -0.265 1.265 22 C -0.204 4.204 23 C -0.021 4.021 24 C -0.154 4.154 25 N 0.059 4.941 26 O -0.310 6.310 27 O -0.342 6.342 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.092 0.908 33 H 0.053 0.947 34 H 0.090 0.910 35 H 0.075 0.925 36 H 0.081 0.919 37 H 0.412 0.588 38 H 0.124 0.876 39 H 0.315 0.685 40 H 0.116 0.884 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.818 7.137 0.494 7.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.149 4.149 3 H 0.106 0.894 4 C -0.015 4.015 5 O -0.303 6.303 6 C -0.014 4.014 7 C -0.205 4.205 8 C 0.043 3.957 9 H 0.102 0.898 10 N -0.373 5.373 11 C 0.195 3.805 12 C -0.348 4.348 13 C 0.101 3.899 14 C -0.440 4.440 15 H 0.118 0.882 16 C -0.208 4.208 17 N -0.331 5.331 18 Si 0.894 3.106 19 H -0.189 1.189 20 H -0.189 1.189 21 H -0.190 1.190 22 C -0.226 4.226 23 C -0.041 4.041 24 C -0.261 4.261 25 N 0.476 4.524 26 O -0.467 6.467 27 O -0.483 6.483 28 H 0.077 0.923 29 H 0.074 0.926 30 H 0.082 0.918 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.071 0.929 34 H 0.108 0.892 35 H 0.094 0.906 36 H 0.100 0.900 37 H 0.265 0.735 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.134 0.866 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 1.680 8.837 0.765 9.028 hybrid contribution -0.943 -2.049 -0.983 2.460 sum 0.737 6.788 -0.218 6.831 Atomic orbital electron populations 1.21727 0.94016 1.02839 1.01650 1.22000 0.96974 1.00398 0.95574 0.89430 1.22653 0.81199 1.00240 0.97397 1.87866 1.20155 1.76492 1.45819 1.22533 0.98482 0.95153 0.85267 1.22599 0.96777 1.02099 0.99053 1.20922 0.92364 0.84373 0.98066 0.89811 1.46240 1.67932 1.15060 1.08093 1.17251 0.88836 0.87168 0.87250 1.20502 1.24796 1.00065 0.89409 1.17625 0.88883 0.90696 0.92687 1.22642 1.17357 1.08014 0.95944 0.88238 1.29134 0.91558 0.99381 1.00770 1.69967 1.21687 1.33453 1.08022 0.83492 0.78734 0.74858 0.73537 1.18928 1.18930 1.18978 1.20831 1.10748 0.95072 0.95957 1.19961 0.95158 0.99039 0.89930 1.19540 1.32109 0.93071 0.81422 1.49881 0.97458 1.01973 1.03116 1.96116 1.61935 0.92881 1.95766 1.95670 1.68625 1.65085 1.18950 0.92261 0.92601 0.91831 0.92498 0.88994 0.92915 0.89224 0.90596 0.90049 0.73481 0.85796 0.86844 0.86615 0.85954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.01 37.16 0.33 -1.64 16 2 C -0.13 -1.84 2.71 -90.48 -0.25 -2.09 16 3 H 0.09 1.13 8.14 -51.93 -0.42 0.70 16 4 C 0.06 0.91 5.95 37.21 0.22 1.13 16 5 O -0.38 -6.15 10.77 -35.23 -0.38 -6.53 16 6 C 0.06 0.98 6.68 37.21 0.25 1.23 16 7 C -0.17 -2.62 5.82 -26.59 -0.15 -2.78 16 8 C 0.15 2.46 2.10 -67.74 -0.14 2.31 16 9 H 0.08 1.44 6.26 -51.93 -0.32 1.12 16 10 N -0.73 -14.08 3.74 -52.02 -0.19 -14.27 16 11 C 0.30 6.59 6.62 -83.85 -0.56 6.04 16 12 C -0.32 -6.78 7.20 -38.51 -0.28 -7.06 16 13 C 0.11 2.25 5.37 -106.82 -0.57 1.67 16 14 C -0.41 -8.24 9.25 -35.45 -0.33 -8.57 16 15 H 0.10 1.84 8.03 -52.48 -0.42 1.41 16 16 C 0.03 0.47 5.12 -15.19 -0.08 0.39 16 17 N -0.71 -14.19 12.32 55.98 0.69 -13.50 16 18 Si 1.07 15.74 30.08 -169.99 -5.11 10.63 16 19 H -0.27 -3.95 7.11 56.52 0.40 -3.55 16 20 H -0.26 -3.80 7.11 56.52 0.40 -3.40 16 21 H -0.27 -3.66 7.11 56.52 0.40 -3.26 16 22 C -0.20 -4.16 9.76 -39.04 -0.38 -4.54 16 23 C -0.02 -0.45 9.50 -40.06 -0.38 -0.83 16 24 C -0.15 -3.59 6.92 -79.32 -0.55 -4.14 16 25 N 0.06 1.50 4.98 34.27 0.17 1.67 16 26 O -0.31 -8.13 19.14 -31.56 -0.60 -8.73 16 27 O -0.34 -8.55 16.29 -31.57 -0.51 -9.07 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 1.00 7.27 -51.93 -0.38 0.63 16 31 H 0.06 0.94 6.71 -51.93 -0.35 0.59 16 32 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.05 0.94 7.75 -51.93 -0.40 0.54 16 34 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 35 H 0.08 1.10 8.14 -51.93 -0.42 0.67 16 36 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.41 8.44 2.87 -42.11 -0.12 8.31 16 38 H 0.12 2.58 4.53 -52.48 -0.24 2.34 16 39 H 0.32 6.55 6.70 -40.82 -0.27 6.27 16 40 H 0.12 2.08 8.06 -52.49 -0.42 1.66 16 41 H 0.12 2.49 7.57 -52.49 -0.40 2.09 16 LS Contribution 333.38 15.07 5.02 5.02 Total: -1.00 -25.56 333.38 -8.86 -34.42 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -5.08 Total: 19.23 kcal Atomic # 6 Polarization: -16.01 SS G_CDS: -2.86 Total: -18.86 kcal Atomic # 7 Polarization: -26.77 SS G_CDS: 0.67 Total: -26.10 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: -1.50 Total: -24.33 kcal Atomic # 14 Polarization: 15.74 SS G_CDS: -5.11 Total: 10.63 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -25.56 -8.86 -34.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170826708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.284 kcal (2) G-P(sol) polarization free energy of solvation -25.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds