Wall clock time and date at job start Tue Mar 31 2020 09:28:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.57534 * 2 1 4 4 C 1.53095 * 109.52571 * 239.83652 * 2 1 3 5 5 O 1.42896 * 109.41892 * 182.48851 * 4 2 1 6 6 C 1.42908 * 114.10072 * 61.15790 * 5 4 2 7 7 C 1.53095 * 109.41389 * 298.84415 * 6 5 4 8 8 C 1.53181 * 109.52195 * 120.15529 * 2 1 3 9 9 H 1.09002 * 109.54208 * 296.84246 * 8 2 1 10 10 N 1.46504 * 109.54521 * 57.01612 * 8 2 1 11 11 C 1.39671 * 120.00063 * 205.00092 * 10 8 2 12 12 C 1.38172 * 119.98967 * 5.54167 * 11 10 8 13 13 C 1.41140 * 119.50382 * 180.29154 * 12 11 10 14 14 C 1.40356 * 120.25145 * 179.72256 * 13 12 11 15 15 H 1.08006 * 119.99731 * 154.89147 * 14 13 12 16 16 C 1.46527 * 120.00304 * 334.89143 * 14 13 12 17 17 N 1.29513 * 119.99671 * 335.19912 * 16 14 13 18 18 Si 1.86792 * 120.00124 * 155.20259 * 16 14 13 19 19 H 1.48500 * 109.47423 * 179.97438 * 18 16 14 20 20 H 1.48507 * 109.47098 * 299.99852 * 18 16 14 21 21 H 1.48505 * 109.47353 * 59.99916 * 18 16 14 22 22 C 1.41334 * 119.49209 * 359.45264 * 13 12 11 23 23 C 1.36485 * 119.96280 * 0.27493 * 22 13 12 24 24 C 1.38661 * 120.50391 * 359.97438 * 23 22 13 25 25 N 1.48023 * 119.74125 * 180.02562 * 24 23 22 26 26 O 1.31695 * 119.99959 * 353.55757 * 25 24 23 27 27 O 1.31699 * 119.99464 * 173.55841 * 25 24 23 28 28 H 1.09005 * 109.46996 * 299.84530 * 1 2 3 29 29 H 1.08995 * 109.46980 * 59.84983 * 1 2 3 30 30 H 1.09005 * 109.47121 * 179.84748 * 1 2 3 31 31 H 1.09001 * 109.47815 * 302.47246 * 4 2 1 32 32 H 1.08995 * 109.47580 * 62.48912 * 4 2 1 33 33 H 1.09002 * 109.47907 * 58.82452 * 6 5 4 34 34 H 1.08998 * 109.48169 * 178.86425 * 6 5 4 35 35 H 1.09000 * 109.52481 * 297.70546 * 7 6 5 36 36 H 1.08995 * 109.52283 * 177.50914 * 7 6 5 37 37 H 0.96999 * 119.99595 * 25.00249 * 10 8 2 38 38 H 1.08003 * 120.24926 * 0.02562 * 12 11 10 39 39 H 0.96998 * 120.00116 * 354.47064 * 17 16 14 40 40 H 1.08000 * 120.01973 * 180.24939 * 22 13 12 41 41 H 1.08002 * 119.74976 * 180.02562 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8952 1.0270 0.0000 4 6 2.0417 -0.7250 -1.2475 5 8 3.4695 -0.7745 -1.2162 6 6 4.0044 -1.4817 -0.0955 7 6 3.5716 -0.7871 1.1983 8 6 2.0419 -0.7253 1.2484 9 1 1.7266 -0.1832 2.1400 10 7 1.4973 -2.0849 1.2832 11 6 1.3669 -2.7539 2.5023 12 6 1.6430 -2.0948 3.6848 13 6 1.5138 -2.7826 4.9105 14 6 1.7958 -2.1299 6.1207 15 1 1.3367 -2.4699 7.0373 16 6 2.7130 -0.9874 6.1406 17 7 3.6119 -0.8626 5.2167 18 14 2.5858 0.2888 7.4986 19 1 3.6195 1.3350 7.2932 20 1 1.2379 0.9114 7.4682 21 1 2.7993 -0.3655 8.8145 22 6 1.0928 -4.1317 4.9103 23 6 0.8202 -4.7605 3.7300 24 6 0.9524 -4.0856 2.5260 25 7 0.6518 -4.7838 1.2558 26 8 0.3841 -6.0732 1.2607 27 8 0.6522 -4.1154 0.1211 28 1 -0.3633 0.5115 0.8914 29 1 -0.3633 0.5161 -0.8886 30 1 -0.3634 -1.0277 -0.0027 31 1 1.6432 -1.7394 -1.2675 32 1 1.7158 -0.1888 -2.1388 33 1 3.6316 -2.5060 -0.1005 34 1 5.0926 -1.4904 -0.1569 35 1 3.9780 0.2240 1.2225 36 1 3.9416 -1.3500 2.0552 37 1 1.2273 -2.5204 0.4596 38 1 1.9594 -1.0622 3.6711 39 1 3.7314 -1.5647 4.5581 40 1 0.9871 -4.6650 5.8435 41 1 0.4983 -5.7915 3.7338 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001170826708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:28:42 Heat of formation + Delta-G solvation = -41.776785 kcal Electronic energy + Delta-G solvation = -26522.711002 eV Core-core repulsion = 22790.946840 eV Total energy + Delta-G solvation = -3731.764162 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.42870 -40.17604 -38.68246 -37.08787 -36.06369 -34.91464 -34.15337 -32.76908 -31.97544 -29.72069 -28.59662 -27.77718 -26.19827 -25.37859 -23.46095 -23.09418 -22.71780 -20.56334 -20.19529 -19.00967 -18.59093 -17.82085 -17.18407 -17.02348 -16.92390 -16.48709 -15.98918 -15.88831 -15.66420 -15.27905 -15.18285 -14.96575 -14.30392 -14.18220 -13.76051 -13.54554 -13.40863 -13.33368 -13.02917 -12.91621 -12.78351 -12.18679 -12.13454 -12.05660 -11.92676 -11.83267 -11.72277 -11.54366 -11.40586 -11.33954 -11.28458 -11.02621 -10.47325 -10.18193 -9.72742 -8.63158 -6.99441 -1.14204 0.72771 0.94899 1.00925 1.54608 1.60801 1.85705 2.18914 2.33695 2.48481 2.80687 3.10376 3.52239 3.71450 3.73842 3.83403 3.93336 4.14215 4.25712 4.29331 4.38376 4.42683 4.52437 4.59751 4.63389 4.70993 4.74031 4.77743 4.83101 4.86678 4.96178 5.02393 5.03354 5.12574 5.23461 5.28953 5.31206 5.59502 5.60794 5.74340 6.06782 6.07940 6.26413 6.44568 6.51607 6.92609 7.44450 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.011556 B = 0.006502 C = 0.004702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.374099 B = 4305.534515 C = 5953.162284 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.123 4.123 3 H 0.114 0.886 4 C 0.060 3.940 5 O -0.388 6.388 6 C 0.064 3.936 7 C -0.159 4.159 8 C 0.143 3.857 9 H 0.080 0.920 10 N -0.722 5.722 11 C 0.284 3.716 12 C -0.315 4.315 13 C 0.060 3.940 14 C -0.365 4.365 15 H 0.128 0.872 16 C -0.004 4.004 17 N -0.708 5.708 18 Si 1.121 2.879 19 H -0.270 1.270 20 H -0.256 1.256 21 H -0.244 1.244 22 C -0.167 4.167 23 C -0.055 4.055 24 C -0.141 4.141 25 N 0.056 4.944 26 O -0.398 6.398 27 O -0.392 6.392 28 H 0.062 0.938 29 H 0.082 0.918 30 H 0.032 0.968 31 H 0.029 0.971 32 H 0.121 0.879 33 H 0.022 0.978 34 H 0.111 0.889 35 H 0.097 0.903 36 H 0.064 0.936 37 H 0.407 0.593 38 H 0.128 0.872 39 H 0.307 0.693 40 H 0.148 0.852 41 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.792 10.855 4.117 11.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.142 4.142 3 H 0.132 0.868 4 C -0.017 4.017 5 O -0.307 6.307 6 C -0.012 4.012 7 C -0.197 4.197 8 C 0.037 3.963 9 H 0.098 0.902 10 N -0.367 5.367 11 C 0.173 3.827 12 C -0.343 4.343 13 C 0.055 3.945 14 C -0.390 4.390 15 H 0.145 0.855 16 C -0.235 4.235 17 N -0.325 5.325 18 Si 0.935 3.065 19 H -0.194 1.194 20 H -0.180 1.180 21 H -0.167 1.167 22 C -0.189 4.189 23 C -0.075 4.075 24 C -0.256 4.256 25 N 0.446 4.554 26 O -0.531 6.531 27 O -0.519 6.519 28 H 0.081 0.919 29 H 0.101 0.899 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.138 0.862 33 H 0.040 0.960 34 H 0.129 0.871 35 H 0.116 0.884 36 H 0.083 0.917 37 H 0.259 0.741 38 H 0.146 0.854 39 H 0.123 0.877 40 H 0.166 0.834 41 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 2.598 12.375 4.177 13.316 hybrid contribution -1.006 -2.746 -1.477 3.277 sum 1.592 9.628 2.700 10.126 Atomic orbital electron populations 1.21692 0.93613 1.01315 1.03175 1.22005 0.97248 1.01063 0.93837 0.86839 1.22765 0.80573 0.99278 0.99043 1.87858 1.20798 1.76177 1.45841 1.22518 0.99587 0.93593 0.85524 1.22530 0.96132 1.02892 0.98189 1.21157 0.92915 0.82976 0.99218 0.90163 1.46370 1.67094 1.15982 1.07231 1.17428 0.89881 0.86997 0.88391 1.20506 1.24530 1.00063 0.89199 1.17955 0.91668 0.91548 0.93359 1.23378 1.13309 1.06013 0.96316 0.85455 1.30522 0.90639 1.00534 1.01769 1.70042 1.22164 1.32797 1.07534 0.82934 0.78956 0.72796 0.71847 1.19397 1.18016 1.16717 1.21211 1.06416 0.94749 0.96523 1.20109 0.97733 0.99692 0.89980 1.20144 1.30056 0.93841 0.81539 1.49880 1.00472 1.01701 1.03367 1.96047 1.67036 0.94068 1.95961 1.95605 1.71350 1.65083 1.19865 0.91857 0.89928 0.94858 0.95285 0.86158 0.95957 0.87148 0.88438 0.91688 0.74100 0.85430 0.87720 0.83442 0.85712 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.71 9.01 71.98 0.65 -3.06 16 2 C -0.12 -3.31 2.71 -10.70 -0.03 -3.34 16 3 H 0.11 2.54 8.14 -2.39 -0.02 2.53 16 4 C 0.06 1.74 5.95 72.01 0.43 2.17 16 5 O -0.39 -12.15 10.77 -148.98 -1.60 -13.75 16 6 C 0.06 2.04 6.68 72.01 0.48 2.52 16 7 C -0.16 -4.87 5.82 30.69 0.18 -4.69 16 8 C 0.14 4.64 2.10 45.11 0.09 4.74 16 9 H 0.08 2.66 6.26 -2.39 -0.01 2.65 16 10 N -0.72 -29.18 3.74 -318.50 -1.19 -30.37 16 11 C 0.28 12.62 6.62 38.18 0.25 12.87 16 12 C -0.31 -12.94 7.20 22.97 0.17 -12.77 16 13 C 0.06 2.36 5.37 -21.29 -0.11 2.25 16 14 C -0.36 -12.66 9.25 24.95 0.23 -12.43 16 15 H 0.13 3.81 8.03 -2.91 -0.02 3.79 16 16 C 0.00 -0.12 5.12 87.20 0.45 0.32 16 17 N -0.71 -25.64 12.32 23.21 0.29 -25.35 16 18 Si 1.12 26.21 30.08 68.60 2.06 28.27 16 19 H -0.27 -6.61 7.11 99.48 0.71 -5.91 16 20 H -0.26 -5.75 7.11 99.48 0.71 -5.04 16 21 H -0.24 -5.00 7.11 99.48 0.71 -4.29 16 22 C -0.17 -6.43 9.76 22.62 0.22 -6.20 16 23 C -0.06 -2.43 9.50 21.96 0.21 -2.22 16 24 C -0.14 -6.92 6.92 36.78 0.25 -6.67 16 25 N 0.06 3.11 4.98 -45.50 -0.23 2.89 16 26 O -0.40 -23.25 19.14 3.52 0.07 -23.18 16 27 O -0.39 -21.68 16.29 3.52 0.06 -21.63 16 28 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 29 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 30 H 0.03 1.08 7.27 -2.38 -0.02 1.06 16 31 H 0.03 1.02 6.71 -2.39 -0.02 1.00 16 32 H 0.12 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.02 0.84 7.75 -2.39 -0.02 0.82 16 34 H 0.11 2.98 8.14 -2.39 -0.02 2.96 16 35 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 36 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 37 H 0.41 17.94 2.87 -113.11 -0.32 17.62 16 38 H 0.13 5.07 4.53 -2.91 -0.01 5.06 16 39 H 0.31 11.98 6.70 -92.71 -0.62 11.35 16 40 H 0.15 4.69 8.06 -2.91 -0.02 4.67 16 41 H 0.12 5.34 7.57 -2.91 -0.02 5.32 16 Total: -1.00 -59.09 333.38 3.81 -55.27 By element: Atomic # 1 Polarization: 53.47 SS G_CDS: 0.89 Total: 54.36 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: 3.47 Total: -26.51 kcal Atomic # 7 Polarization: -51.70 SS G_CDS: -1.13 Total: -52.84 kcal Atomic # 8 Polarization: -57.08 SS G_CDS: -1.48 Total: -58.56 kcal Atomic # 14 Polarization: 26.21 SS G_CDS: 2.06 Total: 28.27 kcal Total: -59.09 3.81 -55.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001170826708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.498 kcal (2) G-P(sol) polarization free energy of solvation -59.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.275 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds