Wall clock time and date at job start Tue Mar 31 2020 10:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.46496 * 120.00628 * 2 1 4 4 C 1.50701 * 109.47217 * 270.00167 * 3 2 1 5 5 H 1.08007 * 119.99504 * 359.97438 * 4 3 2 6 6 C 1.37877 * 120.00545 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99426 * 359.97438 * 6 4 3 8 8 Si 1.86790 * 120.00217 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.47517 * 89.99806 * 8 6 4 10 10 H 1.48504 * 109.47026 * 209.99844 * 8 6 4 11 11 H 1.48499 * 109.47373 * 329.99622 * 8 6 4 12 12 C 1.34779 * 119.99457 * 179.97438 * 2 1 3 13 13 O 1.21284 * 119.99695 * 180.02562 * 12 2 1 14 14 C 1.50696 * 120.00395 * 359.97438 * 12 2 1 15 15 C 1.52997 * 109.47242 * 179.97438 * 14 12 2 16 16 N 1.46506 * 109.47289 * 180.02562 * 15 14 12 17 17 C 1.34774 * 120.00072 * 180.02562 * 16 15 14 18 18 O 1.21773 * 120.00033 * 359.97438 * 17 16 15 19 19 C 1.41545 * 119.99929 * 180.02562 * 17 16 15 20 20 C 1.35630 * 120.00463 * 180.02562 * 19 17 16 21 21 C 1.41605 * 120.00435 * 180.02562 * 20 19 17 22 22 C 1.37946 * 126.10466 * 179.97438 * 21 20 19 23 23 C 1.40305 * 106.53013 * 179.97438 * 22 21 20 24 24 C 1.35161 * 107.20495 * 359.97438 * 23 22 21 25 25 O 1.34017 * 109.03046 * 359.77076 * 24 23 22 26 26 H 1.09003 * 109.47428 * 270.00430 * 1 2 3 27 27 H 1.09002 * 109.47045 * 30.00304 * 1 2 3 28 28 H 1.09001 * 109.47421 * 150.00042 * 1 2 3 29 29 H 1.09001 * 109.47029 * 29.99311 * 3 2 1 30 30 H 1.08997 * 109.47682 * 149.99765 * 3 2 1 31 31 H 0.97005 * 119.99659 * 180.02562 * 7 6 4 32 32 H 1.09001 * 109.46948 * 60.00339 * 14 12 2 33 33 H 1.08996 * 109.47390 * 299.99981 * 14 12 2 34 34 H 1.09001 * 109.47289 * 60.00043 * 15 14 12 35 35 H 1.09004 * 109.47261 * 300.00299 * 15 14 12 36 36 H 0.97001 * 119.99251 * 0.02562 * 16 15 14 37 37 H 1.08004 * 120.00062 * 0.02562 * 19 17 16 38 38 H 1.08000 * 119.99338 * 359.97438 * 20 19 17 39 39 H 1.08003 * 126.73238 * 359.97438 * 22 21 20 40 40 H 1.08000 * 126.40314 * 179.97438 * 23 22 21 41 41 H 1.08002 * 125.48084 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4488 1.7037 -1.4208 5 1 2.0981 1.0956 -2.2417 6 6 3.1262 2.8778 -1.6729 7 7 3.5527 3.6183 -0.6732 8 14 3.4381 3.4166 -3.4340 9 1 2.3080 4.2589 -3.9016 10 1 4.6982 4.2000 -3.4961 11 1 3.5563 2.2193 -4.3044 12 6 2.1387 -1.1673 0.0005 13 8 3.3516 -1.1673 0.0010 14 6 1.3852 -2.4723 0.0017 15 6 2.3794 -3.6353 0.0014 16 7 1.6468 -4.9040 0.0020 17 6 2.3207 -6.0713 0.0024 18 8 3.5384 -6.0713 0.0018 19 6 1.6129 -7.2970 0.0023 20 6 2.2909 -8.4717 0.0033 21 6 1.5828 -9.6980 0.0027 22 6 2.1415 -10.9593 0.0030 23 6 1.0734 -11.8690 0.0027 24 6 -0.0681 -11.1454 0.0029 25 8 0.2411 -9.8414 0.0083 26 1 -0.3634 0.0001 1.0277 27 1 -0.3633 0.8900 -0.5139 28 1 -0.3634 -0.8900 -0.5138 29 1 1.6085 2.0283 0.5137 30 1 3.1499 1.1383 0.5138 31 1 4.0290 4.4446 -0.8505 32 1 0.7583 -2.5307 -0.8881 33 1 0.7589 -2.5295 0.8919 34 1 3.0068 -3.5772 0.8909 35 1 3.0054 -3.5780 -0.8891 36 1 0.6768 -4.9039 0.0020 37 1 0.5329 -7.2970 0.0015 38 1 3.3709 -8.4717 0.0036 39 1 3.1946 -11.1993 0.0033 40 1 1.1491 -12.9464 0.0025 41 1 -1.0685 -11.5525 0.0032 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491401310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:09:35 Heat of formation + Delta-G solvation = -39.122742 kcal Electronic energy + Delta-G solvation = -23224.145305 eV Core-core repulsion = 19492.496231 eV Total energy + Delta-G solvation = -3731.649075 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.97589 -39.97960 -38.96925 -35.41277 -34.76513 -34.38829 -33.47859 -32.64731 -31.08292 -29.25907 -27.76067 -25.94975 -25.03373 -23.44731 -22.33256 -21.94958 -21.04224 -19.89492 -18.38943 -17.96379 -17.14066 -16.66117 -16.53861 -16.51578 -15.75509 -15.58735 -15.25012 -14.90341 -14.70658 -14.16367 -14.02713 -13.51110 -13.45195 -13.23802 -12.87692 -12.57284 -12.43655 -12.30863 -12.19461 -11.92003 -11.66183 -11.34985 -11.16268 -10.99460 -10.88135 -10.56692 -10.34948 -10.16020 -10.11996 -9.63459 -9.11368 -8.96282 -8.43612 -8.36483 -7.67058 -6.04400 -4.09254 0.08530 1.71696 2.30977 2.50643 3.11224 3.29135 3.30161 3.35860 3.38134 3.43550 4.01044 4.31648 4.45262 4.47525 4.52256 4.76831 4.85848 5.04730 5.16063 5.19303 5.21936 5.30566 5.32196 5.47925 5.58096 5.65711 5.69490 5.83909 5.87887 6.02123 6.03404 6.14772 6.17885 6.39209 6.60943 7.02827 7.40885 7.44205 7.51714 7.91683 8.14235 8.22750 8.37923 8.88974 9.05930 9.55825 11.03699 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.031908 B = 0.001950 C = 0.001919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 877.324377 B =14355.275737 C =14590.226415 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.602 5.602 3 C 0.244 3.756 4 C -0.527 4.527 5 H 0.057 0.943 6 C 0.060 3.940 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.274 1.274 12 C 0.507 3.493 13 O -0.538 6.538 14 C -0.152 4.152 15 C 0.134 3.866 16 N -0.725 5.725 17 C 0.545 3.455 18 O -0.542 6.542 19 C -0.201 4.201 20 C 0.006 3.994 21 C -0.008 4.008 22 C -0.164 4.164 23 C -0.219 4.219 24 C -0.021 4.021 25 O -0.166 6.166 26 H 0.044 0.956 27 H 0.074 0.926 28 H 0.057 0.943 29 H 0.032 0.968 30 H 0.045 0.955 31 H 0.263 0.737 32 H 0.093 0.907 33 H 0.092 0.908 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.399 0.601 37 H 0.130 0.870 38 H 0.162 0.838 39 H 0.157 0.843 40 H 0.153 0.847 41 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.323 -28.077 2.817 30.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.335 5.335 3 C 0.125 3.875 4 C -0.566 4.566 5 H 0.075 0.925 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.199 1.199 12 C 0.292 3.708 13 O -0.415 6.415 14 C -0.193 4.193 15 C 0.010 3.990 16 N -0.376 5.376 17 C 0.335 3.665 18 O -0.422 6.422 19 C -0.222 4.222 20 C -0.014 4.014 21 C -0.057 4.057 22 C -0.184 4.184 23 C -0.238 4.238 24 C -0.090 4.090 25 O -0.061 6.061 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.075 0.925 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.112 0.888 33 H 0.110 0.890 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.233 0.767 37 H 0.148 0.852 38 H 0.179 0.821 39 H 0.175 0.825 40 H 0.171 0.829 41 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -10.905 -27.577 2.868 29.793 hybrid contribution -0.533 0.237 -0.996 1.154 sum -11.438 -27.340 1.871 29.695 Atomic orbital electron populations 1.21644 0.81442 1.02605 1.00407 1.48155 1.06184 1.07831 1.71293 1.19307 0.92613 0.78010 0.97556 1.21428 1.36620 1.06273 0.92274 0.92469 1.24945 0.95327 0.96418 0.97484 1.69935 1.38375 1.14277 1.30734 0.86484 0.77677 0.78579 0.84604 1.20668 1.21054 1.19889 1.20017 0.88028 0.84844 0.77880 1.90712 1.13781 1.87153 1.49866 1.21847 0.99492 0.93826 1.04117 1.21098 0.93723 0.79888 1.04279 1.45967 1.10250 1.06228 1.75197 1.16955 0.87704 0.84373 0.77512 1.90878 1.13561 1.88064 1.49706 1.22109 1.01011 0.92781 1.06294 1.20692 0.99992 0.87855 0.92875 1.19913 0.80344 0.95505 1.09971 1.22403 1.00866 0.91040 1.04053 1.21812 0.92097 1.01168 1.08686 1.24342 1.00725 0.79859 1.04118 1.84102 1.23832 1.27725 1.70473 0.93717 0.90735 0.92471 0.94962 0.93742 0.92700 0.88842 0.88998 0.90367 0.90275 0.76671 0.85180 0.82104 0.82522 0.82892 0.77674 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.24 10.24 59.84 0.61 1.85 16 2 N -0.60 -12.52 2.86 -182.96 -0.52 -13.05 16 3 C 0.24 6.40 5.16 -5.20 -0.03 6.37 16 4 C -0.53 -15.02 9.39 -34.44 -0.32 -15.34 16 5 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.74 13.29 55.43 0.74 -26.00 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 11 H -0.27 -6.72 7.11 56.52 0.40 -6.31 16 12 C 0.51 10.27 7.67 -10.99 -0.08 10.19 16 13 O -0.54 -13.56 15.56 5.55 0.09 -13.48 16 14 C -0.15 -2.04 4.37 -27.89 -0.12 -2.17 16 15 C 0.13 1.94 4.96 -4.04 -0.02 1.92 16 16 N -0.73 -8.12 5.55 -63.24 -0.35 -8.47 16 17 C 0.54 6.99 7.56 -15.00 -0.11 6.87 16 18 O -0.54 -9.27 16.11 5.12 0.08 -9.18 16 19 C -0.20 -1.94 9.41 -39.25 -0.37 -2.31 16 20 C 0.01 0.05 9.39 -39.23 -0.37 -0.32 16 21 C -0.01 -0.07 6.84 -38.41 -0.26 -0.33 16 22 C -0.16 -1.19 10.90 -38.91 -0.42 -1.62 16 23 C -0.22 -1.30 10.87 -39.90 -0.43 -1.73 16 24 C -0.02 -0.12 12.06 29.64 0.36 0.24 16 25 O -0.17 -1.37 10.18 4.71 0.05 -1.32 16 26 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 28 H 0.06 0.66 6.44 -51.93 -0.33 0.33 16 29 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.04 1.32 7.42 -51.93 -0.39 0.93 16 31 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 32 H 0.09 1.05 7.40 -51.93 -0.38 0.67 16 33 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 34 H 0.08 1.29 8.10 -51.93 -0.42 0.87 16 35 H 0.08 1.35 8.10 -51.93 -0.42 0.93 16 36 H 0.40 2.99 8.43 -40.82 -0.34 2.65 16 37 H 0.13 0.96 7.72 -52.48 -0.41 0.56 16 38 H 0.16 1.48 7.46 -52.49 -0.39 1.09 16 39 H 0.16 0.85 8.06 -52.48 -0.42 0.43 16 40 H 0.15 0.56 8.06 -52.49 -0.42 0.13 16 41 H 0.21 0.35 8.06 -52.49 -0.42 -0.07 16 LS Contribution 362.43 15.07 5.46 5.46 Total: -1.00 -37.41 362.43 -6.74 -44.15 By element: Atomic # 1 Polarization: 5.18 SS G_CDS: -5.58 Total: -0.40 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: -1.67 Total: 5.28 kcal Atomic # 7 Polarization: -47.38 SS G_CDS: -0.14 Total: -47.52 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: 0.22 Total: -23.98 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -37.41 -6.74 -44.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491401310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.024 kcal (2) G-P(sol) polarization free energy of solvation -37.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds