Wall clock time and date at job start Tue Mar 31 2020 10:43:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42904 * 113.99681 * 2 1 4 4 C 1.50699 * 109.46657 * 180.02562 * 3 2 1 5 5 C 1.38133 * 120.04148 * 0.24956 * 4 3 2 6 6 C 1.38257 * 120.07296 * 180.25753 * 5 4 3 7 7 C 1.38305 * 120.13730 * 359.74444 * 6 5 4 8 8 C 1.38090 * 120.07476 * 0.02562 * 7 6 5 9 9 C 1.38850 * 120.03073 * 179.97438 * 4 3 2 10 10 N 1.39942 * 120.07027 * 0.02562 * 9 4 3 11 11 C 1.34783 * 119.99869 * 150.58103 * 10 9 4 12 12 O 1.21586 * 120.00044 * 4.46218 * 11 10 9 13 13 N 1.34776 * 119.99753 * 184.46156 * 11 10 9 14 14 C 1.47581 * 134.49046 * 180.02562 * 13 11 10 15 15 C 1.53943 * 86.11556 * 155.35449 * 14 13 11 16 16 O 1.42897 * 113.74408 * 269.15342 * 15 14 13 17 17 C 1.50703 * 113.74164 * 137.95388 * 15 14 13 18 18 H 1.08007 * 119.99992 * 17.28038 * 17 15 14 19 19 C 1.37878 * 119.99909 * 197.29330 * 17 15 14 20 20 N 1.31523 * 119.99561 * 194.54513 * 19 17 15 21 21 Si 1.86798 * 120.00287 * 14.53984 * 19 17 15 22 22 H 1.48502 * 109.47019 * 180.02562 * 21 19 17 23 23 H 1.48502 * 109.46887 * 300.00321 * 21 19 17 24 24 H 1.48497 * 109.47199 * 60.00245 * 21 19 17 25 25 C 1.47806 * 134.45752 * 359.86214 * 13 11 10 26 26 H 1.09004 * 109.47026 * 60.00149 * 1 2 3 27 27 H 1.09004 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47141 * 299.99819 * 1 2 3 29 29 H 1.08999 * 109.47060 * 60.00235 * 3 2 1 30 30 H 1.09001 * 109.47241 * 299.99890 * 3 2 1 31 31 H 1.07999 * 119.96520 * 0.02562 * 5 4 3 32 32 H 1.08002 * 119.93120 * 179.76916 * 6 5 4 33 33 H 1.08001 * 119.96323 * 180.02562 * 7 6 5 34 34 H 1.07994 * 120.03739 * 180.02562 * 8 7 6 35 35 H 0.96999 * 120.00299 * 330.57648 * 10 9 4 36 36 H 1.09003 * 113.76888 * 41.05256 * 14 13 11 37 37 H 1.09000 * 113.77065 * 269.65642 * 14 13 11 38 38 H 0.96697 * 114.00065 * 174.37469 * 16 15 14 39 39 H 0.96999 * 119.99965 * 354.91192 * 20 19 17 40 40 H 1.09004 * 113.76924 * 90.38471 * 25 13 11 41 41 H 1.09001 * 113.83732 * 318.91970 * 25 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 -0.0006 5 6 4.1074 -0.0601 -0.0063 6 6 5.4856 -0.1701 -0.0015 7 6 6.2729 0.9669 0.0036 8 6 5.6844 2.2161 0.0045 9 6 4.3001 2.3300 -0.0013 10 7 3.7006 3.5944 -0.0008 11 6 4.3310 4.6390 0.5720 12 8 5.4545 4.5017 1.0162 13 7 3.7160 5.8355 0.6525 14 6 4.0902 7.1564 1.1941 15 6 3.0677 7.7370 0.2005 16 8 3.6283 8.0769 -1.0692 17 6 2.2158 8.8368 0.7799 18 1 2.5235 9.3379 1.6859 19 6 1.0434 9.2032 0.1535 20 7 0.4491 10.3307 0.4781 21 14 0.2993 8.0984 -1.1560 22 1 -0.9502 8.7137 -1.6712 23 1 1.2655 7.9330 -2.2715 24 1 -0.0087 6.7706 -0.5669 25 6 2.3969 6.3519 0.2306 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8464 -0.8900 31 1 3.4953 -0.9499 -0.0107 32 1 5.9483 -1.1460 -0.0022 33 1 7.3492 0.8777 0.0069 34 1 6.2998 3.1036 0.0081 35 1 2.8313 3.7192 -0.4128 36 1 5.1204 7.4424 0.9819 37 1 3.8153 7.2964 2.2396 38 1 2.9758 8.3609 -1.7239 39 1 0.7940 10.8681 1.2083 40 1 1.6231 6.2550 0.9922 41 1 2.0778 5.9971 -0.7494 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001645709880.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:43:19 Heat of formation + Delta-G solvation = -43.167511 kcal Electronic energy + Delta-G solvation = -25238.478772 eV Core-core repulsion = 21506.654303 eV Total energy + Delta-G solvation = -3731.824469 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.141 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -40.67648 -39.40472 -38.11514 -37.42425 -34.60875 -34.32880 -32.70496 -31.86984 -30.14687 -28.31279 -27.31946 -25.88514 -25.60449 -24.88973 -22.63524 -21.32292 -20.36568 -19.30083 -18.17826 -17.91490 -17.23393 -16.61560 -16.28999 -16.14730 -15.71908 -15.46968 -15.03710 -14.56090 -14.37430 -14.19408 -13.84116 -13.66758 -13.39886 -13.12417 -12.87367 -12.74160 -12.39090 -12.20519 -12.09656 -11.91202 -11.35139 -11.30569 -11.17384 -10.89809 -10.51528 -10.39164 -10.08187 -10.06862 -9.65931 -9.53062 -9.12470 -8.69883 -8.60783 -8.25320 -7.83879 -6.81292 -4.55128 1.30645 1.50053 2.65110 2.99625 3.05826 3.26202 3.36429 3.44377 3.88017 4.00403 4.09519 4.67747 4.75412 4.95956 5.03450 5.04009 5.06648 5.11341 5.21621 5.25294 5.36321 5.39045 5.42900 5.58879 5.70281 5.79289 5.84883 6.01312 6.12098 6.16124 6.22939 6.35297 6.44846 6.56437 6.60819 6.67295 6.91626 7.13946 7.31808 7.46655 8.00815 8.26523 8.49395 8.62239 8.74602 9.20673 10.55336 Molecular weight = 306.14amu Principal moments of inertia in cm(-1) A = 0.016116 B = 0.004185 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1737.005700 B = 6688.610040 C = 8035.834489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.385 6.385 3 C 0.107 3.893 4 C -0.130 4.130 5 C -0.078 4.078 6 C -0.149 4.149 7 C -0.100 4.100 8 C -0.130 4.130 9 C 0.183 3.817 10 N -0.687 5.687 11 C 0.724 3.276 12 O -0.583 6.583 13 N -0.648 5.648 14 C 0.151 3.849 15 C 0.202 3.798 16 O -0.565 6.565 17 C -0.618 4.618 18 H 0.071 0.929 19 C 0.036 3.964 20 N -0.885 5.885 21 Si 1.040 2.960 22 H -0.277 1.277 23 H -0.279 1.279 24 H -0.275 1.275 25 C 0.054 3.946 26 H 0.043 0.957 27 H 0.087 0.913 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.058 0.942 31 H 0.132 0.868 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.153 0.847 35 H 0.403 0.597 36 H 0.075 0.925 37 H 0.092 0.908 38 H 0.367 0.633 39 H 0.275 0.725 40 H 0.095 0.905 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.654 -18.434 -2.694 18.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.304 6.304 3 C 0.030 3.970 4 C -0.134 4.134 5 C -0.096 4.096 6 C -0.168 4.168 7 C -0.119 4.119 8 C -0.150 4.150 9 C 0.086 3.914 10 N -0.333 5.333 11 C 0.428 3.572 12 O -0.462 6.462 13 N -0.385 5.385 14 C 0.029 3.971 15 C 0.161 3.839 16 O -0.373 6.373 17 C -0.656 4.656 18 H 0.089 0.911 19 C -0.172 4.172 20 N -0.517 5.517 21 Si 0.868 3.132 22 H -0.203 1.203 23 H -0.206 1.206 24 H -0.201 1.201 25 C -0.069 4.069 26 H 0.061 0.939 27 H 0.106 0.894 28 H 0.062 0.938 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.150 0.850 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.170 0.830 35 H 0.238 0.762 36 H 0.094 0.906 37 H 0.110 0.890 38 H 0.216 0.784 39 H 0.086 0.914 40 H 0.113 0.887 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.950 -19.015 -3.126 19.293 hybrid contribution -0.097 0.524 0.705 0.884 sum 0.854 -18.490 -2.420 18.667 Atomic orbital electron populations 1.22774 0.80649 1.02896 1.00320 1.87831 1.19849 1.27198 1.95493 1.21098 0.90282 0.85101 1.00492 1.19318 0.93517 0.92769 1.07750 1.20707 0.94406 0.96486 0.98021 1.21093 0.93711 0.98460 1.03503 1.21097 0.99844 0.92008 0.98935 1.21566 0.93162 0.99340 1.00976 1.17313 0.92123 0.82467 0.99455 1.42622 1.23435 1.06769 1.60451 1.15441 0.84105 0.78968 0.78670 1.90824 1.18046 1.82406 1.54908 1.49362 1.18986 1.08202 1.61952 1.23162 1.00249 0.75661 0.98010 1.20370 0.90538 0.90042 0.82987 1.86384 1.39077 1.88380 1.23425 1.22189 1.07728 1.21319 1.14344 0.91055 1.25825 0.94388 0.96552 1.00453 1.70803 1.44238 1.09646 1.27056 0.84136 0.77449 0.75818 0.75774 1.20280 1.20636 1.20092 1.24733 0.86362 0.96664 0.99125 0.93850 0.89437 0.93823 0.91988 0.92400 0.84999 0.86204 0.85929 0.82992 0.76178 0.90611 0.89008 0.78352 0.91433 0.88696 0.91992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.24 11.01 101.05 1.11 1.35 16 2 O -0.38 -4.29 9.18 -35.23 -0.32 -4.62 16 3 C 0.11 1.23 5.35 36.00 0.19 1.42 16 4 C -0.13 -1.75 5.90 -104.43 -0.62 -2.36 16 5 C -0.08 -0.96 9.37 -39.61 -0.37 -1.33 16 6 C -0.15 -1.73 10.04 -39.55 -0.40 -2.13 16 7 C -0.10 -1.28 10.04 -39.61 -0.40 -1.68 16 8 C -0.13 -2.03 8.75 -39.39 -0.34 -2.38 16 9 C 0.18 2.80 6.38 -83.69 -0.53 2.26 16 10 N -0.69 -10.90 5.11 -14.22 -0.07 -10.97 16 11 C 0.72 13.98 8.63 -86.91 -0.75 13.23 16 12 O -0.58 -12.66 14.16 5.29 0.07 -12.58 16 13 N -0.65 -12.62 3.61 -183.90 -0.66 -13.29 16 14 C 0.15 3.09 8.23 -2.97 -0.02 3.06 16 15 C 0.20 4.40 1.07 -90.86 -0.10 4.30 16 16 O -0.56 -12.58 13.47 -35.23 -0.47 -13.05 16 17 C -0.62 -15.39 9.04 -34.44 -0.31 -15.70 16 18 H 0.07 1.92 8.06 -52.48 -0.42 1.50 16 19 C 0.04 0.91 5.44 -17.82 -0.10 0.82 16 20 N -0.88 -24.37 13.70 55.43 0.76 -23.61 16 21 Si 1.04 21.11 24.54 -169.99 -4.17 16.94 16 22 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 23 H -0.28 -5.13 5.83 56.52 0.33 -4.80 16 24 H -0.27 -4.98 6.48 56.52 0.37 -4.61 16 25 C 0.05 1.02 5.22 -2.85 -0.01 1.01 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 28 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.06 0.59 7.86 -51.93 -0.41 0.18 16 31 H 0.13 1.48 7.00 -52.49 -0.37 1.11 16 32 H 0.12 1.08 8.06 -52.49 -0.42 0.65 16 33 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.15 2.69 5.77 -52.49 -0.30 2.39 16 35 H 0.40 5.50 7.41 -40.82 -0.30 5.19 16 36 H 0.08 1.56 8.14 -51.93 -0.42 1.14 16 37 H 0.09 1.77 8.09 -51.93 -0.42 1.35 16 38 H 0.37 7.54 6.10 45.56 0.28 7.82 16 39 H 0.28 7.58 8.73 -40.82 -0.36 7.22 16 40 H 0.10 1.75 7.95 -51.93 -0.41 1.33 16 41 H 0.06 1.06 6.87 -51.93 -0.36 0.71 16 LS Contribution 338.32 15.07 5.10 5.10 Total: -1.00 -30.01 338.32 -7.36 -37.37 By element: Atomic # 1 Polarization: 21.77 SS G_CDS: -4.93 Total: 16.84 kcal Atomic # 6 Polarization: 4.53 SS G_CDS: -2.65 Total: 1.87 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: 0.02 Total: -47.86 kcal Atomic # 8 Polarization: -29.53 SS G_CDS: -0.72 Total: -30.25 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.17 Total: 16.94 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.01 -7.36 -37.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001645709880.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.798 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds