Wall clock time and date at job start Tue Mar 31 2020 09:18:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 C 1.51273 * 120.84984 * 180.02562 * 7 2 1 9 9 C 1.53657 * 108.31358 * 231.38634 * 8 7 2 10 10 C 1.52965 * 109.32419 * 305.13874 * 9 8 7 11 11 H 1.09007 * 109.41184 * 303.62102 * 10 9 8 12 12 N 1.46498 * 109.41216 * 183.83426 * 10 9 8 13 13 C 1.34781 * 119.99603 * 84.64781 * 12 10 9 14 14 O 1.21281 * 120.00398 * 359.97438 * 13 12 10 15 15 C 1.50705 * 119.99557 * 179.97438 * 13 12 10 16 16 C 1.53000 * 109.47079 * 179.97438 * 15 13 12 17 17 C 1.50695 * 109.47386 * 180.02562 * 16 15 13 18 18 C 1.38106 * 119.60803 * 124.72280 * 17 16 15 19 19 C 1.38918 * 119.12809 * 179.77436 * 18 17 16 20 20 F 1.35101 * 120.81281 * 180.24729 * 19 18 17 21 21 C 1.38950 * 118.36861 * 0.49445 * 19 18 17 22 22 C 1.38065 * 119.13087 * 359.75052 * 21 19 18 23 23 N 1.31907 * 119.60276 * 305.00018 * 17 16 15 24 24 C 1.52956 * 109.81741 * 63.72751 * 10 9 8 25 25 C 1.51273 * 120.85383 * 359.72609 * 7 2 1 26 26 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.62223 * 351.04902 * 8 7 2 28 28 H 1.09002 * 109.62354 * 111.61058 * 8 7 2 29 29 H 1.09004 * 109.41735 * 185.25270 * 9 8 7 30 30 H 1.08995 * 109.64280 * 65.16464 * 9 8 7 31 31 H 0.96997 * 120.00379 * 264.64595 * 12 10 9 32 32 H 1.08997 * 109.47198 * 299.99931 * 15 13 12 33 33 H 1.09005 * 109.46937 * 59.99931 * 15 13 12 34 34 H 1.08998 * 109.47265 * 300.00593 * 16 15 13 35 35 H 1.09004 * 109.46719 * 60.00047 * 16 15 13 36 36 H 1.08001 * 120.43421 * 0.02562 * 18 17 16 37 37 H 1.08001 * 120.43950 * 179.72905 * 21 19 18 38 38 H 1.08003 * 119.60574 * 179.97438 * 22 21 19 39 39 H 1.08995 * 109.48309 * 176.42131 * 24 10 9 40 40 H 1.09005 * 109.49375 * 56.38978 * 24 10 9 41 41 H 1.08993 * 109.62592 * 248.38842 * 25 7 2 42 42 H 1.09001 * 109.62167 * 8.95670 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 6 3.5170 -1.2165 -0.0053 9 6 3.9867 -2.1282 -1.1495 10 6 3.3365 -3.5046 -0.9995 11 1 3.5739 -3.9123 -0.0168 12 7 3.8529 -4.4025 -2.0355 13 6 5.0111 -5.0630 -1.8385 14 8 5.6261 -4.9136 -0.8039 15 6 5.5420 -5.9872 -2.9040 16 6 6.8600 -6.6050 -2.4327 17 6 7.3913 -7.5287 -3.4983 18 6 8.6680 -7.3403 -3.9900 19 6 9.1494 -8.2006 -4.9688 20 9 10.3949 -8.0506 -5.4702 21 6 8.3166 -9.2158 -5.4232 22 6 7.0503 -9.3371 -4.8865 23 7 6.6292 -8.5041 -3.9542 24 6 1.8190 -3.3798 -1.1451 25 6 1.2677 -2.5152 -0.0059 26 1 -0.4850 0.8400 0.0004 27 1 3.8982 -0.2070 -0.1598 28 1 3.8771 -1.6048 0.9475 29 1 5.0710 -2.2320 -1.1084 30 1 3.6993 -1.6927 -2.1065 31 1 3.3612 -4.5218 -2.8631 32 1 4.8166 -6.7784 -3.0931 33 1 5.7128 -5.4239 -3.8214 34 1 7.5853 -5.8136 -2.2438 35 1 6.6896 -7.1682 -1.5151 36 1 9.2855 -6.5373 -3.6155 37 1 8.6552 -9.9008 -6.1864 38 1 6.3965 -10.1232 -5.2343 39 1 1.3669 -4.3706 -1.1008 40 1 1.5824 -2.9147 -2.1021 41 1 1.4236 -3.0214 0.9467 42 1 0.2030 -2.3405 -0.1609 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001175445708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:53 Heat of formation + Delta-G solvation = -73.673591 kcal Electronic energy + Delta-G solvation = -23988.068441 eV Core-core repulsion = 20267.293919 eV Total energy + Delta-G solvation = -3720.774522 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.48879 -40.59795 -39.46876 -36.81089 -34.30236 -33.66824 -32.32954 -31.65075 -30.48510 -29.62926 -27.40453 -25.32954 -24.10264 -22.51745 -21.69736 -21.41264 -19.88747 -19.40649 -18.01472 -17.60274 -16.86540 -16.31807 -16.24709 -15.91882 -15.67175 -15.37724 -14.78074 -14.44133 -14.27351 -14.17970 -13.87201 -13.36910 -13.15663 -12.99153 -12.67960 -12.29267 -12.16992 -12.07323 -11.81173 -11.58474 -11.27223 -10.98755 -10.81434 -10.70522 -10.16700 -10.03755 -9.99702 -9.96160 -9.65443 -9.54808 -9.42564 -8.97167 -8.82513 -8.48569 -8.27832 -6.10264 -4.00903 0.53813 0.61700 2.95940 3.19059 3.27980 3.36137 3.37397 3.44730 3.62997 3.85789 4.18655 4.38675 4.43815 4.57692 4.82011 4.97514 5.02387 5.17424 5.18841 5.27374 5.40711 5.48061 5.53900 5.76294 5.86221 5.91157 5.92785 6.19882 6.21650 6.49546 6.50826 6.72351 6.80037 6.90317 6.97189 7.12012 7.26395 7.44433 7.50771 7.65360 7.71698 7.77664 7.96183 8.38405 8.59257 8.96312 9.54676 10.99222 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.031943 B = 0.002357 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.341556 B =11879.168301 C =12366.940342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.075 3.925 3 Si 0.887 3.113 4 H -0.278 1.278 5 H -0.264 1.264 6 H -0.290 1.290 7 C -0.487 4.487 8 C -0.020 4.020 9 C -0.112 4.112 10 C 0.153 3.847 11 H 0.077 0.923 12 N -0.725 5.725 13 C 0.508 3.492 14 O -0.547 6.547 15 C -0.132 4.132 16 C -0.055 4.055 17 C 0.166 3.834 18 C -0.205 4.205 19 C 0.146 3.854 20 F -0.128 7.128 21 C -0.218 4.218 22 C 0.134 3.866 23 N -0.487 5.487 24 C -0.114 4.114 25 C 0.012 3.988 26 H 0.264 0.736 27 H 0.035 0.965 28 H 0.019 0.981 29 H 0.035 0.965 30 H 0.050 0.950 31 H 0.394 0.606 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.167 0.833 39 H 0.035 0.965 40 H 0.054 0.946 41 H 0.006 0.994 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.954 -16.963 -12.203 25.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.204 1.204 5 H -0.189 1.189 6 H -0.217 1.217 7 C -0.506 4.506 8 C -0.058 4.058 9 C -0.151 4.151 10 C 0.050 3.950 11 H 0.096 0.904 12 N -0.374 5.374 13 C 0.294 3.706 14 O -0.425 6.425 15 C -0.173 4.173 16 C -0.093 4.093 17 C 0.029 3.971 18 C -0.226 4.226 19 C 0.119 3.881 20 F -0.107 7.107 21 C -0.239 4.239 22 C -0.023 4.023 23 N -0.197 5.197 24 C -0.152 4.152 25 C -0.026 4.026 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.038 0.962 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.227 0.773 32 H 0.121 0.879 33 H 0.107 0.893 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.167 0.833 37 H 0.164 0.836 38 H 0.184 0.816 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.024 0.976 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.431 -16.816 -11.128 24.228 hybrid contribution 1.345 0.938 -1.091 1.970 sum 14.776 -15.878 -12.218 24.894 Atomic orbital electron populations 1.69834 1.06123 1.26909 1.50040 1.24845 0.94722 0.98580 0.94573 0.86679 0.79988 0.83259 0.78552 1.20398 1.18943 1.21692 1.20066 0.89424 0.91451 1.49675 1.19876 0.96585 0.95496 0.93802 1.21950 0.97185 0.95214 1.00724 1.21054 0.94496 0.89056 0.90349 0.90450 1.46433 1.23588 1.45891 1.21467 1.20523 0.81225 0.80690 0.88177 1.90693 1.58059 1.65259 1.28498 1.21569 0.97990 0.99391 0.98347 1.20337 0.96880 0.96711 0.95405 1.21290 0.89107 0.92418 0.94262 1.22106 0.98650 1.02347 0.99474 1.18006 0.80353 0.95735 0.94019 1.91554 1.38315 1.95010 1.85798 1.22204 0.96368 1.00519 1.04814 1.22735 0.92722 0.96088 0.90725 1.67576 1.36522 1.04015 1.11561 1.21930 0.92423 0.98582 1.02306 1.19354 0.98727 0.92824 0.91669 0.92618 0.94650 0.96237 0.94584 0.93138 0.77269 0.87946 0.89303 0.89105 0.88461 0.83290 0.83586 0.81562 0.94613 0.92757 0.97553 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.39 12.73 55.43 0.71 -24.69 16 2 C 0.08 2.04 5.46 -17.82 -0.10 1.95 16 3 Si 0.89 21.06 27.53 -169.99 -4.68 16.38 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.26 -6.09 6.10 56.52 0.34 -5.74 16 6 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 7 C -0.49 -12.75 5.50 -98.92 -0.54 -13.29 16 8 C -0.02 -0.46 5.62 -27.26 -0.15 -0.62 16 9 C -0.11 -2.35 5.52 -26.41 -0.15 -2.49 16 10 C 0.15 2.97 2.35 -67.97 -0.16 2.81 16 11 H 0.08 1.67 7.58 -51.92 -0.39 1.28 16 12 N -0.72 -11.12 5.07 -53.84 -0.27 -11.39 16 13 C 0.51 7.67 7.79 -10.98 -0.09 7.59 16 14 O -0.55 -10.39 15.64 5.56 0.09 -10.31 16 15 C -0.13 -1.41 5.56 -27.88 -0.15 -1.57 16 16 C -0.06 -0.57 4.90 -27.89 -0.14 -0.70 16 17 C 0.17 1.59 6.18 -82.61 -0.51 1.08 16 18 C -0.21 -1.77 9.71 -39.38 -0.38 -2.16 16 19 C 0.15 1.23 7.40 -39.07 -0.29 0.94 16 20 F -0.13 -1.15 17.30 2.25 0.04 -1.11 16 21 C -0.22 -1.49 10.11 -39.38 -0.40 -1.89 16 22 C 0.13 0.96 11.18 -17.57 -0.20 0.77 16 23 N -0.49 -4.68 9.88 -9.51 -0.09 -4.77 16 24 C -0.11 -2.30 5.40 -26.61 -0.14 -2.45 16 25 C 0.01 0.30 5.97 -27.46 -0.16 0.13 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.04 0.84 4.59 -51.93 -0.24 0.60 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.39 4.90 8.60 -40.82 -0.35 4.55 16 32 H 0.10 1.01 7.95 -51.93 -0.41 0.60 16 33 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.09 0.92 7.82 -51.93 -0.41 0.51 16 35 H 0.10 1.09 8.10 -51.93 -0.42 0.67 16 36 H 0.15 1.08 7.95 -52.49 -0.42 0.66 16 37 H 0.15 0.64 8.06 -52.49 -0.42 0.22 16 38 H 0.17 0.69 8.06 -52.48 -0.42 0.26 16 39 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 41 H 0.01 0.15 8.14 -51.93 -0.42 -0.27 16 42 H 0.06 1.62 7.07 -51.93 -0.37 1.25 16 LS Contribution 348.19 15.07 5.25 5.25 Total: -1.00 -31.01 348.19 -8.53 -39.54 By element: Atomic # 1 Polarization: 7.01 SS G_CDS: -6.00 Total: 1.00 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -3.56 Total: -9.90 kcal Atomic # 7 Polarization: -41.20 SS G_CDS: 0.34 Total: -40.86 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.31 kcal Atomic # 9 Polarization: -1.15 SS G_CDS: 0.04 Total: -1.11 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.68 Total: 16.38 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.01 -8.53 -39.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175445708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.134 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds