Wall clock time and date at job start Tue Mar 31 2020 09:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99710 * 2 1 4 4 H 1.48501 * 109.46758 * 90.00167 * 3 2 1 5 5 H 1.48499 * 109.47026 * 210.00015 * 3 2 1 6 6 H 1.48496 * 109.47474 * 330.00050 * 3 2 1 7 7 C 1.37871 * 119.99826 * 180.27590 * 2 1 3 8 8 C 1.51273 * 120.84984 * 180.02562 * 7 2 1 9 9 C 1.53657 * 108.31358 * 231.38634 * 8 7 2 10 10 C 1.52965 * 109.32419 * 305.13874 * 9 8 7 11 11 H 1.09007 * 109.41184 * 303.62102 * 10 9 8 12 12 N 1.46498 * 109.41216 * 183.83426 * 10 9 8 13 13 C 1.34781 * 119.99603 * 84.64781 * 12 10 9 14 14 O 1.21281 * 120.00398 * 359.97438 * 13 12 10 15 15 C 1.50705 * 119.99557 * 179.97438 * 13 12 10 16 16 C 1.53000 * 109.47079 * 179.97438 * 15 13 12 17 17 C 1.50695 * 109.47386 * 180.02562 * 16 15 13 18 18 C 1.38106 * 119.60803 * 124.72280 * 17 16 15 19 19 C 1.38918 * 119.12809 * 179.77436 * 18 17 16 20 20 F 1.35101 * 120.81281 * 180.24729 * 19 18 17 21 21 C 1.38950 * 118.36861 * 0.49445 * 19 18 17 22 22 C 1.38065 * 119.13087 * 359.75052 * 21 19 18 23 23 N 1.31907 * 119.60276 * 305.00018 * 17 16 15 24 24 C 1.52956 * 109.81741 * 63.72751 * 10 9 8 25 25 C 1.51273 * 120.85383 * 359.72609 * 7 2 1 26 26 H 0.96999 * 120.00128 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.62223 * 351.04902 * 8 7 2 28 28 H 1.09002 * 109.62354 * 111.61058 * 8 7 2 29 29 H 1.09004 * 109.41735 * 185.25270 * 9 8 7 30 30 H 1.08995 * 109.64280 * 65.16464 * 9 8 7 31 31 H 0.96997 * 120.00379 * 264.64595 * 12 10 9 32 32 H 1.08997 * 109.47198 * 299.99931 * 15 13 12 33 33 H 1.09005 * 109.46937 * 59.99931 * 15 13 12 34 34 H 1.08998 * 109.47265 * 300.00593 * 16 15 13 35 35 H 1.09004 * 109.46719 * 60.00047 * 16 15 13 36 36 H 1.08001 * 120.43421 * 0.02562 * 18 17 16 37 37 H 1.08001 * 120.43950 * 179.72905 * 21 19 18 38 38 H 1.08003 * 119.60574 * 179.97438 * 22 21 19 39 39 H 1.08995 * 109.48309 * 176.42131 * 24 10 9 40 40 H 1.09005 * 109.49375 * 56.38978 * 24 10 9 41 41 H 1.08993 * 109.62592 * 248.38842 * 25 7 2 42 42 H 1.09001 * 109.62167 * 8.95670 * 25 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7000 6 1 1.4466 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0057 8 6 3.5170 -1.2165 -0.0053 9 6 3.9867 -2.1282 -1.1495 10 6 3.3365 -3.5046 -0.9995 11 1 3.5739 -3.9123 -0.0168 12 7 3.8529 -4.4025 -2.0355 13 6 5.0111 -5.0630 -1.8385 14 8 5.6261 -4.9136 -0.8039 15 6 5.5420 -5.9872 -2.9040 16 6 6.8600 -6.6050 -2.4327 17 6 7.3913 -7.5287 -3.4983 18 6 8.6680 -7.3403 -3.9900 19 6 9.1494 -8.2006 -4.9688 20 9 10.3949 -8.0506 -5.4702 21 6 8.3166 -9.2158 -5.4232 22 6 7.0503 -9.3371 -4.8865 23 7 6.6292 -8.5041 -3.9542 24 6 1.8190 -3.3798 -1.1451 25 6 1.2677 -2.5152 -0.0059 26 1 -0.4850 0.8400 0.0004 27 1 3.8982 -0.2070 -0.1598 28 1 3.8771 -1.6048 0.9475 29 1 5.0710 -2.2320 -1.1084 30 1 3.6993 -1.6927 -2.1065 31 1 3.3612 -4.5218 -2.8631 32 1 4.8166 -6.7784 -3.0931 33 1 5.7128 -5.4239 -3.8214 34 1 7.5853 -5.8136 -2.2438 35 1 6.6896 -7.1682 -1.5151 36 1 9.2855 -6.5373 -3.6155 37 1 8.6552 -9.9008 -6.1864 38 1 6.3965 -10.1232 -5.2343 39 1 1.3669 -4.3706 -1.1008 40 1 1.5824 -2.9147 -2.1021 41 1 1.4236 -3.0214 0.9467 42 1 0.2030 -2.3405 -0.1609 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175445708.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:18:52 Heat of formation + Delta-G solvation = -92.437942 kcal Electronic energy + Delta-G solvation = -23988.882124 eV Core-core repulsion = 20267.293919 eV Total energy + Delta-G solvation = -3721.588206 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -50.12307 -41.29396 -40.70797 -38.45529 -35.36352 -35.07372 -33.39368 -32.93678 -31.49726 -31.29253 -29.06231 -26.31043 -24.67942 -24.01952 -23.31282 -22.62076 -21.28127 -20.98612 -18.72216 -18.26812 -18.22881 -17.52231 -17.07848 -16.86184 -16.83468 -16.48793 -16.36382 -15.53448 -15.25025 -15.05716 -14.82078 -14.65212 -14.55695 -14.29541 -14.13694 -13.90185 -13.83960 -13.37051 -12.96424 -12.77123 -12.65618 -12.53692 -12.41178 -12.09718 -11.93341 -11.81006 -11.39166 -11.05123 -10.76392 -10.67339 -10.59939 -10.57588 -10.50829 -10.10289 -9.83015 -8.16594 -6.10820 -0.05189 0.01837 1.39035 1.41979 1.49869 1.75954 2.29406 2.41336 2.63864 2.92946 3.11239 3.22210 3.59965 3.85541 3.91177 4.00302 4.08563 4.18672 4.22224 4.26402 4.51763 4.55946 4.67747 4.72998 4.74063 4.81406 4.88428 4.88884 4.97521 5.08080 5.09820 5.14078 5.19861 5.25339 5.26615 5.56517 5.60612 5.62191 5.73182 5.76793 5.83724 6.35760 6.72176 6.90853 6.94796 7.39898 7.47310 8.93892 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.031943 B = 0.002357 C = 0.002264 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.341556 B =11879.168301 C =12366.940342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.024 3.976 3 Si 0.938 3.062 4 H -0.278 1.278 5 H -0.251 1.251 6 H -0.290 1.290 7 C -0.498 4.498 8 C -0.022 4.022 9 C -0.104 4.104 10 C 0.165 3.835 11 H 0.054 0.946 12 N -0.716 5.716 13 C 0.507 3.493 14 O -0.588 6.588 15 C -0.117 4.117 16 C -0.051 4.051 17 C 0.156 3.844 18 C -0.210 4.210 19 C 0.131 3.869 20 F -0.134 7.134 21 C -0.207 4.207 22 C 0.132 3.868 23 N -0.506 5.506 24 C -0.100 4.100 25 C 0.007 3.993 26 H 0.263 0.737 27 H 0.036 0.964 28 H 0.013 0.987 29 H 0.040 0.960 30 H 0.055 0.945 31 H 0.412 0.588 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.088 0.912 35 H 0.082 0.918 36 H 0.156 0.844 37 H 0.173 0.827 38 H 0.198 0.802 39 H 0.058 0.942 40 H 0.057 0.943 41 H -0.004 1.004 42 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.262 -18.303 -14.386 27.837 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.175 4.175 3 Si 0.764 3.236 4 H -0.204 1.204 5 H -0.175 1.175 6 H -0.216 1.216 7 C -0.517 4.517 8 C -0.060 4.060 9 C -0.143 4.143 10 C 0.061 3.939 11 H 0.072 0.928 12 N -0.366 5.366 13 C 0.295 3.705 14 O -0.469 6.469 15 C -0.157 4.157 16 C -0.090 4.090 17 C 0.019 3.981 18 C -0.231 4.231 19 C 0.104 3.896 20 F -0.113 7.113 21 C -0.228 4.228 22 C -0.025 4.025 23 N -0.216 5.216 24 C -0.139 4.139 25 C -0.031 4.031 26 H 0.072 0.928 27 H 0.055 0.945 28 H 0.031 0.969 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.248 0.752 32 H 0.134 0.866 33 H 0.129 0.871 34 H 0.107 0.893 35 H 0.101 0.899 36 H 0.174 0.826 37 H 0.190 0.810 38 H 0.215 0.785 39 H 0.077 0.923 40 H 0.076 0.924 41 H 0.014 0.986 42 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 14.749 -18.175 -13.342 26.942 hybrid contribution 0.947 1.246 -0.391 1.613 sum 15.696 -16.930 -13.733 26.862 Atomic orbital electron populations 1.69956 1.07495 1.27472 1.51964 1.25572 0.95372 1.01655 0.94855 0.85849 0.79399 0.79772 0.78541 1.20375 1.17514 1.21612 1.20604 0.90862 0.91996 1.48242 1.19885 0.95071 0.96345 0.94732 1.21828 0.97435 0.95490 0.99581 1.20603 0.93766 0.88966 0.90605 0.92803 1.46177 1.24011 1.45177 1.21274 1.21277 0.80369 0.80380 0.88436 1.90683 1.59123 1.66554 1.30513 1.21507 0.98183 0.98769 0.97222 1.20231 0.96718 0.96739 0.95284 1.21086 0.89544 0.92861 0.94608 1.22187 0.98533 1.02773 0.99615 1.18216 0.80480 0.96491 0.94433 1.91540 1.38730 1.95125 1.85889 1.22515 0.95798 0.99898 1.04548 1.23269 0.93293 0.96087 0.89820 1.67555 1.37137 1.04477 1.12477 1.21695 0.92988 0.98846 1.00346 1.19326 0.97353 0.93453 0.93014 0.92764 0.94528 0.96902 0.94153 0.92623 0.75155 0.86555 0.87075 0.89328 0.89925 0.82597 0.80968 0.78503 0.92323 0.92402 0.98572 0.94781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.03 12.73 21.45 0.27 -53.76 16 2 C 0.02 1.30 5.46 84.65 0.46 1.77 16 3 Si 0.94 43.20 27.53 68.60 1.89 45.09 16 4 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 5 H -0.25 -10.89 6.10 99.48 0.61 -10.28 16 6 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 7 C -0.50 -26.21 5.50 -16.17 -0.09 -26.30 16 8 C -0.02 -1.05 5.62 30.25 0.17 -0.88 16 9 C -0.10 -4.25 5.52 30.80 0.17 -4.08 16 10 C 0.17 6.22 2.35 44.97 0.11 6.32 16 11 H 0.05 2.31 7.58 -2.38 -0.02 2.30 16 12 N -0.72 -20.43 5.07 -442.64 -2.25 -22.67 16 13 C 0.51 14.46 7.79 87.66 0.68 15.14 16 14 O -0.59 -22.01 15.64 -3.03 -0.05 -22.06 16 15 C -0.12 -2.22 5.56 29.85 0.17 -2.05 16 16 C -0.05 -1.00 4.90 29.85 0.15 -0.85 16 17 C 0.16 2.72 6.18 42.51 0.26 2.98 16 18 C -0.21 -3.34 9.71 22.40 0.22 -3.13 16 19 C 0.13 1.96 7.40 22.60 0.17 2.13 16 20 F -0.13 -2.21 17.30 44.97 0.78 -1.43 16 21 C -0.21 -2.23 10.11 22.40 0.23 -2.00 16 22 C 0.13 1.49 11.18 84.64 0.95 2.44 16 23 N -0.51 -8.55 9.88 -184.01 -1.82 -10.37 16 24 C -0.10 -3.95 5.40 30.67 0.17 -3.79 16 25 C 0.01 0.32 5.97 30.12 0.18 0.50 16 26 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 27 H 0.04 1.68 4.59 -2.39 -0.01 1.67 16 28 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.04 1.60 8.14 -2.38 -0.02 1.58 16 30 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 31 H 0.41 8.97 8.60 -92.71 -0.80 8.18 16 32 H 0.12 1.95 7.95 -2.39 -0.02 1.93 16 33 H 0.11 1.67 8.14 -2.38 -0.02 1.66 16 34 H 0.09 1.72 7.82 -2.39 -0.02 1.70 16 35 H 0.08 1.83 8.10 -2.38 -0.02 1.81 16 36 H 0.16 2.10 7.95 -2.91 -0.02 2.08 16 37 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 38 H 0.20 0.86 8.06 -2.91 -0.02 0.83 16 39 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.06 2.24 8.14 -2.38 -0.02 2.22 16 41 H 0.00 -0.21 8.14 -2.39 -0.02 -0.23 16 42 H 0.03 1.85 7.07 -2.39 -0.02 1.83 16 Total: -1.00 -67.71 348.19 2.95 -64.76 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: 0.14 Total: 12.22 kcal Atomic # 6 Polarization: -15.75 SS G_CDS: 3.98 Total: -11.77 kcal Atomic # 7 Polarization: -83.01 SS G_CDS: -3.79 Total: -86.80 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.06 kcal Atomic # 9 Polarization: -2.21 SS G_CDS: 0.78 Total: -1.43 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.89 Total: 45.09 kcal Total: -67.71 2.95 -64.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175445708.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.680 kcal (2) G-P(sol) polarization free energy of solvation -67.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds