Wall clock time and date at job start Tue Mar 31 2020 08:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46886 * 2 1 4 4 C 1.53000 * 109.46886 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47060 * 180.02562 * 4 3 2 6 6 H 1.08998 * 110.53367 * 56.37480 * 5 4 3 7 7 N 1.47314 * 110.60016 * 293.54793 * 5 4 3 8 8 C 1.34518 * 106.62020 * 241.47269 * 7 5 4 9 9 O 1.21546 * 123.77007 * 180.02562 * 8 7 5 10 10 N 1.33796 * 112.46119 * 359.97438 * 8 7 5 11 11 C 1.40402 * 124.18073 * 179.97438 * 10 8 7 12 12 C 1.40371 * 125.96589 * 4.74049 * 11 10 8 13 13 C 1.35238 * 107.87069 * 179.86392 * 12 11 10 14 14 N 1.34964 * 107.85268 * 0.39297 * 13 12 11 15 15 C 1.46507 * 125.97972 * 179.74560 * 14 13 12 16 16 C 1.50707 * 109.46804 * 124.98069 * 15 14 13 17 17 H 1.07997 * 119.99904 * 0.02562 * 16 15 14 18 18 C 1.37870 * 119.99954 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99758 * 0.02562 * 18 16 15 20 20 Si 1.86794 * 120.00190 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47500 * 90.00148 * 20 18 16 22 22 H 1.48506 * 109.47319 * 210.00083 * 20 18 16 23 23 H 1.48505 * 109.47310 * 329.99955 * 20 18 16 24 24 N 1.31184 * 125.96914 * 185.04901 * 11 10 8 25 25 C 1.34768 * 111.64116 * 0.02562 * 10 8 7 26 26 O 1.21232 * 127.15694 * 180.02562 * 25 10 8 27 27 H 1.09001 * 109.47583 * 60.00267 * 1 2 3 28 28 H 1.09004 * 109.46724 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47098 * 299.99158 * 1 2 3 30 30 H 1.09001 * 109.46741 * 240.00394 * 2 1 3 31 31 H 1.09002 * 109.47398 * 120.00496 * 2 1 3 32 32 H 1.09001 * 109.46652 * 60.00345 * 3 2 1 33 33 H 1.08992 * 109.47514 * 300.00434 * 3 2 1 34 34 H 1.09002 * 109.47398 * 300.00496 * 4 3 2 35 35 H 1.09001 * 109.47194 * 60.00677 * 4 3 2 36 36 H 0.97005 * 126.68691 * 61.43809 * 7 5 4 37 37 H 1.08007 * 126.07048 * 0.02562 * 12 11 10 38 38 H 1.08003 * 126.07537 * 180.14459 * 13 12 11 39 39 H 1.09001 * 109.47297 * 244.97790 * 15 14 13 40 40 H 1.08995 * 109.47401 * 4.98429 * 15 14 13 41 41 H 0.97004 * 119.99839 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5699 1.4425 -0.0006 5 6 4.0799 2.8850 0.0000 6 1 3.6748 3.4334 0.8504 7 7 3.7328 3.5581 -1.2636 8 6 4.8944 3.9024 -1.8479 9 8 4.9689 4.4803 -2.9146 10 7 5.9587 3.5386 -1.1232 11 6 7.2896 3.7760 -1.5023 12 6 7.7092 4.5001 -2.6293 13 6 9.0615 4.5038 -2.6403 14 7 9.4859 3.8024 -1.5682 15 6 10.8820 3.5525 -1.2008 16 6 11.1211 4.0202 0.2118 17 1 10.3138 4.4591 0.7792 18 6 12.3701 3.8866 0.7800 19 7 13.3531 3.3516 0.0891 20 14 12.6664 4.4656 2.5311 21 1 12.3916 3.3517 3.4740 22 1 14.0790 4.9001 2.6766 23 1 11.7641 5.6053 2.8350 24 7 8.3581 3.3550 -0.8683 25 6 5.5954 2.9153 0.0150 26 8 6.3282 2.4717 0.8729 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5137 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8899 32 1 1.6766 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9337 0.9285 0.8891 35 1 3.9329 0.9289 -0.8909 36 1 2.8404 3.7207 -1.6074 37 1 7.0662 4.9729 -3.3570 38 1 9.6901 4.9797 -3.3784 39 1 11.0905 2.4849 -1.2703 40 1 11.5392 4.0961 -1.8796 41 1 14.2320 3.2580 0.4888 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272117863.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:58:07 Heat of formation + Delta-G solvation = 28.483966 kcal Electronic energy + Delta-G solvation = -24739.627916 eV Core-core repulsion = 21043.203239 eV Total energy + Delta-G solvation = -3696.424677 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.60110 -40.30681 -38.54642 -36.98660 -35.73400 -34.68168 -33.37443 -31.33638 -30.86581 -29.50080 -27.47613 -26.72228 -24.10975 -23.55287 -22.58675 -21.59988 -21.40953 -20.03455 -19.33460 -17.87991 -17.18130 -16.65978 -16.57012 -16.16588 -15.90480 -15.38950 -15.19079 -14.63323 -14.35537 -14.20241 -14.11028 -13.94315 -13.69498 -13.11034 -12.95233 -12.58670 -12.53766 -12.28675 -11.84345 -11.62316 -11.60858 -11.40566 -11.08850 -10.96473 -10.90273 -10.73076 -10.60746 -10.32652 -10.22837 -9.76360 -9.68199 -9.54226 -8.63084 -8.37660 -7.71897 -6.24010 -4.28607 1.64906 1.96146 2.45960 2.90486 2.95499 3.26498 3.32022 3.36989 3.53459 3.67439 3.92640 4.20384 4.33902 4.43044 4.61575 4.69266 4.83688 5.03675 5.07635 5.12904 5.24500 5.30605 5.34598 5.45346 5.48445 5.61859 5.66436 5.74261 5.85711 5.94026 5.96250 6.27917 6.42666 6.64215 6.77739 6.98150 7.01345 7.26274 7.52084 7.69454 7.85318 7.94036 8.11199 8.47049 8.79447 9.37164 10.85052 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.018806 B = 0.003248 C = 0.002912 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1488.546325 B = 8617.534748 C = 9613.286295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.117 4.117 4 C -0.121 4.121 5 C 0.099 3.901 6 H 0.129 0.871 7 N -0.722 5.722 8 C 0.712 3.288 9 O -0.529 6.529 10 N -0.487 5.487 11 C 0.246 3.754 12 C -0.278 4.278 13 C 0.057 3.943 14 N -0.314 5.314 15 C 0.257 3.743 16 C -0.529 4.529 17 H 0.069 0.931 18 C 0.063 3.937 19 N -0.895 5.895 20 Si 0.909 3.091 21 H -0.277 1.277 22 H -0.284 1.284 23 H -0.272 1.272 24 N -0.260 5.260 25 C 0.513 3.487 26 O -0.425 6.425 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.054 0.946 30 H 0.063 0.937 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.092 0.908 35 H 0.077 0.923 36 H 0.440 0.560 37 H 0.156 0.844 38 H 0.174 0.826 39 H 0.048 0.952 40 H 0.060 0.940 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.516 -2.794 -2.447 23.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.164 4.164 3 C -0.155 4.155 4 C -0.160 4.160 5 C -0.010 4.010 6 H 0.147 0.853 7 N -0.388 5.388 8 C 0.412 3.588 9 O -0.401 6.401 10 N -0.230 5.230 11 C -0.005 4.005 12 C -0.309 4.309 13 C -0.093 4.093 14 N -0.097 5.097 15 C 0.140 3.860 16 C -0.567 4.567 17 H 0.088 0.912 18 C -0.140 4.140 19 N -0.534 5.534 20 Si 0.736 3.264 21 H -0.202 1.202 22 H -0.210 1.210 23 H -0.197 1.197 24 N -0.090 5.090 25 C 0.298 3.702 26 O -0.289 6.289 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.111 0.889 35 H 0.095 0.905 36 H 0.285 0.715 37 H 0.173 0.827 38 H 0.192 0.808 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -22.171 -3.468 -1.476 22.489 hybrid contribution -0.374 0.811 0.096 0.898 sum -22.545 -2.657 -1.380 22.743 Atomic orbital electron populations 1.21773 0.95736 1.01720 1.01809 1.21524 0.95928 0.96422 1.02492 1.21601 0.93733 0.97676 1.02471 1.21861 0.96729 0.92627 1.04784 1.22149 0.92286 0.97070 0.89502 0.85309 1.45448 1.07626 1.62871 1.22879 1.15538 0.80567 0.79436 0.83285 1.90976 1.84984 1.44062 1.20067 1.42837 1.04561 1.53727 1.21877 1.18733 0.82446 1.02624 0.96724 1.21179 0.94110 1.12799 1.02829 1.22540 0.94947 0.98383 0.93413 1.49356 1.07110 1.36657 1.16541 1.19840 0.69240 0.98821 0.98114 1.21241 0.96525 1.41477 0.97451 0.91247 1.24930 0.95481 0.94828 0.98759 1.69919 1.02241 1.43801 1.37409 0.86311 0.77268 0.79232 0.83614 1.20244 1.20983 1.19699 1.77655 0.90511 1.22346 1.18441 1.20940 0.90567 0.77498 0.81189 1.90901 1.59290 1.41659 1.37040 0.92738 0.92747 0.92693 0.91820 0.91651 0.91252 0.91708 0.88923 0.90450 0.71525 0.82664 0.80846 0.93438 0.92195 0.92308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.13 -0.69 5.93 -26.73 -0.16 -0.85 16 3 C -0.12 -0.60 5.12 -26.73 -0.14 -0.74 16 4 C -0.12 -0.91 4.98 -26.73 -0.13 -1.04 16 5 C 0.10 0.91 3.68 -68.20 -0.25 0.66 16 6 H 0.13 0.86 8.14 -51.93 -0.42 0.44 16 7 N -0.72 -6.67 5.97 -59.19 -0.35 -7.03 16 8 C 0.71 10.44 8.58 -88.02 -0.76 9.69 16 9 O -0.53 -9.06 15.49 5.33 0.08 -8.98 16 10 N -0.49 -8.48 2.83 -65.80 -0.19 -8.66 16 11 C 0.25 5.20 7.68 -154.19 -1.18 4.02 16 12 C -0.28 -5.42 9.88 -39.85 -0.39 -5.81 16 13 C 0.06 1.11 11.44 -17.24 -0.20 0.91 16 14 N -0.31 -7.39 3.67 -62.55 -0.23 -7.62 16 15 C 0.26 6.57 6.26 -5.19 -0.03 6.54 16 16 C -0.53 -14.97 9.24 -34.44 -0.32 -15.29 16 17 H 0.07 2.06 7.81 -52.49 -0.41 1.65 16 18 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 19 N -0.90 -25.52 13.29 55.43 0.74 -24.79 16 20 Si 0.91 21.83 29.54 -169.99 -5.02 16.81 16 21 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 N -0.26 -6.33 11.57 31.48 0.36 -5.97 16 25 C 0.51 8.06 7.61 -10.55 -0.08 7.98 16 26 O -0.43 -8.34 17.17 5.60 0.10 -8.24 16 27 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 28 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 0.29 7.43 -51.93 -0.39 -0.10 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 35 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.44 2.64 8.42 -40.82 -0.34 2.30 16 37 H 0.16 2.82 6.52 -52.48 -0.34 2.48 16 38 H 0.17 2.66 8.06 -52.48 -0.42 2.24 16 39 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.48 8.07 -51.93 -0.42 1.06 16 41 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 352.66 15.07 5.31 5.31 Total: -1.00 -34.59 352.66 -8.25 -42.84 By element: Atomic # 1 Polarization: 4.68 SS G_CDS: -5.69 Total: -1.01 kcal Atomic # 6 Polarization: 10.70 SS G_CDS: -3.37 Total: 7.33 kcal Atomic # 7 Polarization: -54.39 SS G_CDS: 0.33 Total: -54.06 kcal Atomic # 8 Polarization: -17.40 SS G_CDS: 0.18 Total: -17.22 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.59 -8.25 -42.84 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272117863.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.329 kcal (2) G-P(sol) polarization free energy of solvation -34.592 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.252 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds