Wall clock time and date at job start Tue Mar 31 2020 08:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52995 * 109.47058 * 2 1 4 4 C 1.53001 * 109.47058 * 179.97438 * 3 2 1 5 5 C 1.52997 * 110.65719 * 66.46051 * 4 3 2 6 6 N 1.47319 * 110.59827 * 303.54317 * 4 3 2 7 7 C 1.34521 * 106.62072 * 241.47251 * 6 4 3 8 8 O 1.21541 * 123.76786 * 179.97438 * 7 6 4 9 9 N 1.33794 * 112.45757 * 0.02562 * 7 6 4 10 10 C 1.40409 * 124.17624 * 179.97438 * 9 7 6 11 11 C 1.40375 * 125.96668 * 5.02171 * 10 9 7 12 12 C 1.35236 * 107.86940 * 179.71683 * 11 10 9 13 13 N 1.34972 * 107.85537 * 0.42506 * 12 11 10 14 14 C 1.46499 * 125.97975 * 179.84280 * 13 12 11 15 15 C 1.50701 * 109.47260 * 124.71717 * 14 13 12 16 16 H 1.08002 * 119.99761 * 359.97438 * 15 14 13 17 17 C 1.37871 * 119.99694 * 180.27562 * 15 14 13 18 18 N 1.31514 * 120.00482 * 359.71466 * 17 15 14 19 19 Si 1.86801 * 119.99746 * 179.72062 * 17 15 14 20 20 H 1.48494 * 109.47230 * 359.97438 * 19 17 15 21 21 H 1.48505 * 109.47301 * 119.99669 * 19 17 15 22 22 H 1.48498 * 109.47430 * 239.99516 * 19 17 15 23 23 N 1.31193 * 125.96677 * 184.99674 * 10 9 7 24 24 C 1.34764 * 111.64750 * 0.22784 * 9 7 6 25 25 O 1.21234 * 127.15952 * 179.73935 * 24 9 7 26 26 H 1.09000 * 109.47231 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47377 * 300.00341 * 1 2 3 28 28 H 1.09002 * 109.46891 * 59.99885 * 1 2 3 29 29 H 1.08997 * 109.46876 * 239.99814 * 2 1 3 30 30 H 1.09002 * 109.46891 * 120.00115 * 2 1 3 31 31 H 1.08997 * 109.47429 * 60.00153 * 3 2 1 32 32 H 1.09002 * 109.47363 * 299.99826 * 3 2 1 33 33 H 1.09005 * 109.47006 * 297.78580 * 5 4 3 34 34 H 1.08997 * 109.47186 * 57.78574 * 5 4 3 35 35 H 1.08995 * 109.46912 * 177.79142 * 5 4 3 36 36 H 0.97001 * 126.68081 * 61.51030 * 6 4 3 37 37 H 1.08000 * 126.06580 * 359.97438 * 11 10 9 38 38 H 1.08003 * 126.07627 * 180.30010 * 12 11 10 39 39 H 1.09000 * 109.47197 * 4.70723 * 14 13 12 40 40 H 1.09007 * 109.46342 * 244.71295 * 14 13 12 41 41 H 0.96995 * 120.00207 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.1103 0.8705 -1.3115 6 7 4.0878 0.6806 1.1503 7 6 4.7991 1.5453 1.8960 8 8 5.3671 1.2405 2.9264 9 7 4.8105 2.7785 1.3771 10 6 5.4773 3.8710 1.9544 11 6 6.3040 3.8269 3.0881 12 6 6.7587 5.0794 3.3191 13 7 6.2346 5.8904 2.3760 14 6 6.4649 7.3322 2.2561 15 6 6.9847 7.6449 0.8766 16 1 7.1295 6.8492 0.1609 17 6 7.2813 8.9461 0.5303 18 7 7.1052 9.9150 1.4019 19 14 7.9330 9.3327 -1.1771 20 1 8.0406 8.0768 -1.9620 21 1 7.0037 10.2669 -1.8619 22 1 9.2734 9.9619 -1.0646 23 7 5.4370 5.1111 1.5283 24 6 4.0984 2.8438 0.2349 25 8 3.9193 3.8199 -0.4616 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8900 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6767 1.9563 -0.8900 33 1 3.7902 -0.1663 -1.4150 34 1 3.7262 1.4545 -2.1479 35 1 5.1993 0.9157 -1.3064 36 1 3.9442 -0.2610 1.3335 37 1 6.5389 2.9478 3.6699 38 1 7.4216 5.3782 4.1177 39 1 7.1968 7.6464 3.0002 40 1 5.5280 7.8646 2.4207 41 1 7.3142 10.8304 1.1584 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000272249586.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:06 Heat of formation + Delta-G solvation = 35.014558 kcal Electronic energy + Delta-G solvation = -25343.532547 eV Core-core repulsion = 21647.391058 eV Total energy + Delta-G solvation = -3696.141489 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.73413 -40.33936 -38.58699 -37.20122 -35.57875 -34.09822 -33.27844 -31.21795 -30.78955 -29.49423 -27.30865 -27.06416 -25.03927 -23.57176 -22.94590 -21.71432 -20.97158 -19.86772 -19.34221 -17.74549 -16.93555 -16.64688 -16.57985 -16.06652 -15.75516 -15.44487 -15.17904 -14.68101 -14.34137 -14.17370 -14.01658 -13.69749 -13.28430 -12.98666 -12.79609 -12.61935 -12.57627 -12.32798 -12.21765 -11.85050 -11.66954 -11.57179 -11.09348 -11.02677 -10.89291 -10.66813 -10.59618 -10.30290 -10.21124 -9.73953 -9.66339 -9.52489 -8.63606 -8.37060 -7.71342 -6.24108 -4.28636 1.66167 1.97114 2.46733 2.91207 2.93629 3.24476 3.31923 3.38954 3.51676 3.68481 3.89955 4.15499 4.33967 4.36451 4.66723 4.70209 4.98109 5.06773 5.11981 5.20923 5.26490 5.33667 5.34696 5.41830 5.46647 5.64007 5.65797 5.74174 5.82125 5.90808 5.97432 6.28450 6.43921 6.66151 6.78265 6.98974 7.01711 7.26962 7.53597 7.69837 7.85391 7.94266 8.12949 8.47512 8.79860 9.37227 10.85019 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.018607 B = 0.003702 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1504.432549 B = 7561.184672 C = 8406.166426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.115 4.115 4 C 0.125 3.875 5 C -0.147 4.147 6 N -0.718 5.718 7 C 0.712 3.288 8 O -0.529 6.529 9 N -0.487 5.487 10 C 0.245 3.755 11 C -0.278 4.278 12 C 0.057 3.943 13 N -0.314 5.314 14 C 0.257 3.743 15 C -0.528 4.528 16 H 0.070 0.930 17 C 0.063 3.937 18 N -0.895 5.895 19 Si 0.908 3.092 20 H -0.271 1.271 21 H -0.280 1.280 22 H -0.282 1.282 23 N -0.260 5.260 24 C 0.518 3.482 25 O -0.423 6.423 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.069 0.931 36 H 0.439 0.561 37 H 0.156 0.844 38 H 0.174 0.826 39 H 0.060 0.940 40 H 0.048 0.952 41 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.376 -20.981 -1.691 23.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.154 4.154 4 C 0.035 3.965 5 C -0.205 4.205 6 N -0.384 5.384 7 C 0.412 3.588 8 O -0.401 6.401 9 N -0.230 5.230 10 C -0.006 4.006 11 C -0.309 4.309 12 C -0.093 4.093 13 N -0.097 5.097 14 C 0.140 3.860 15 C -0.566 4.566 16 H 0.088 0.912 17 C -0.140 4.140 18 N -0.534 5.534 19 Si 0.735 3.265 20 H -0.195 1.195 21 H -0.206 1.206 22 H -0.208 1.208 23 N -0.089 5.089 24 C 0.303 3.697 25 O -0.287 6.287 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.110 0.890 33 H 0.099 0.901 34 H 0.104 0.896 35 H 0.088 0.912 36 H 0.284 0.716 37 H 0.173 0.827 38 H 0.192 0.808 39 H 0.078 0.922 40 H 0.066 0.934 41 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -9.571 -19.342 -2.383 21.711 hybrid contribution 0.665 -0.543 -0.114 0.866 sum -8.906 -19.885 -2.497 21.931 Atomic orbital electron populations 1.21755 0.95138 1.01861 1.02262 1.21526 0.96545 0.95483 1.02419 1.21860 0.89981 0.98916 1.04602 1.21511 0.96830 0.88836 0.89351 1.22022 1.02283 1.02223 0.94016 1.45576 1.55191 1.12281 1.25374 1.15543 0.79934 0.80028 0.83246 1.90972 1.47767 1.78757 1.22612 1.42861 1.47188 1.08618 1.24300 1.18759 0.98968 0.86829 0.96035 1.21175 1.08492 0.98739 1.02481 1.22540 1.00301 0.90329 0.96119 1.49357 1.32359 1.09820 1.18136 1.19842 0.98404 0.68081 0.99713 1.21286 1.44117 0.93775 0.97465 0.91183 1.24929 0.95236 0.95666 0.98170 1.69922 1.48073 1.00512 1.34867 0.86267 0.78374 0.78542 0.83333 1.19498 1.20617 1.20763 1.77661 1.16127 0.99449 1.15700 1.20877 0.78130 0.90495 0.80212 1.90884 1.54152 1.36043 1.47574 0.92484 0.92539 0.92400 0.91155 0.91708 0.90641 0.89004 0.90075 0.89593 0.91225 0.71623 0.82672 0.80842 0.92206 0.93430 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.12 -0.67 5.53 -26.73 -0.15 -0.82 16 3 C -0.12 -0.94 4.54 -26.73 -0.12 -1.06 16 4 C 0.13 1.28 1.00 -132.09 -0.13 1.15 16 5 C -0.15 -1.15 8.72 37.16 0.32 -0.83 16 6 N -0.72 -7.12 5.41 -52.93 -0.29 -7.41 16 7 C 0.71 10.77 8.58 -88.02 -0.76 10.01 16 8 O -0.53 -9.21 15.49 5.33 0.08 -9.13 16 9 N -0.49 -8.69 2.83 -65.79 -0.19 -8.87 16 10 C 0.25 5.25 7.68 -154.17 -1.18 4.07 16 11 C -0.28 -5.46 9.88 -39.85 -0.39 -5.85 16 12 C 0.06 1.11 11.44 -17.24 -0.20 0.92 16 13 N -0.31 -7.42 3.67 -62.56 -0.23 -7.65 16 14 C 0.26 6.58 6.26 -5.19 -0.03 6.54 16 15 C -0.53 -14.98 9.24 -34.44 -0.32 -15.30 16 16 H 0.07 2.09 7.81 -52.49 -0.41 1.68 16 17 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 18 N -0.90 -25.55 13.29 55.43 0.74 -24.81 16 19 Si 0.91 21.82 29.54 -169.99 -5.02 16.80 16 20 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 23 N -0.26 -6.37 11.57 31.48 0.36 -6.01 16 24 C 0.52 8.45 6.94 -10.55 -0.07 8.38 16 25 O -0.42 -8.45 17.16 5.60 0.10 -8.35 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.07 0.30 6.76 -51.93 -0.35 -0.05 16 30 H 0.06 0.32 7.04 -51.93 -0.37 -0.04 16 31 H 0.07 0.71 8.13 -51.93 -0.42 0.29 16 32 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.08 0.40 6.83 -51.93 -0.35 0.04 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.44 2.91 8.12 -40.82 -0.33 2.58 16 37 H 0.16 2.85 6.52 -52.49 -0.34 2.50 16 38 H 0.17 2.67 8.06 -52.48 -0.42 2.25 16 39 H 0.06 1.48 8.07 -51.93 -0.42 1.06 16 40 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 41 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 348.11 15.07 5.25 5.25 Total: -1.00 -34.53 348.11 -7.47 -42.00 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.51 Total: -0.20 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -2.76 Total: 8.39 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: 0.40 Total: -54.75 kcal Atomic # 8 Polarization: -17.66 SS G_CDS: 0.18 Total: -17.48 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -34.53 -7.47 -42.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000272249586.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.012 kcal (2) G-P(sol) polarization free energy of solvation -34.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.997 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds