Wall clock time and date at job start Tue Mar 31 2020 09:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31011 * 1 3 3 C 1.50694 * 119.99750 * 2 1 4 4 N 1.46900 * 109.47198 * 124.10498 * 3 2 1 5 5 C 1.46902 * 111.00241 * 298.60854 * 4 3 2 6 6 C 1.50699 * 109.46917 * 287.96453 * 5 4 3 7 7 H 1.08003 * 120.00242 * 354.68868 * 6 5 4 8 8 C 1.37874 * 119.99934 * 174.67948 * 6 5 4 9 9 N 1.31520 * 119.99844 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00168 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46828 * 0.02562 * 10 8 6 12 12 H 1.48494 * 109.47145 * 120.00598 * 10 8 6 13 13 H 1.48504 * 109.47238 * 240.00725 * 10 8 6 14 14 C 1.46902 * 110.99730 * 62.56444 * 4 3 2 15 15 C 1.50694 * 109.47714 * 66.04081 * 14 4 3 16 16 O 1.21284 * 119.99863 * 0.02562 * 15 14 4 17 17 N 1.34778 * 120.00732 * 179.97438 * 15 14 4 18 18 C 1.46490 * 120.00285 * 180.02562 * 17 15 14 19 19 C 1.50702 * 109.47029 * 180.02562 * 18 17 15 20 20 C 1.38244 * 119.97313 * 269.72135 * 19 18 17 21 21 C 1.38203 * 120.02374 * 179.72560 * 20 19 18 22 22 C 1.38454 * 119.97576 * 0.56894 * 21 20 19 23 23 F 1.35095 * 120.02967 * 179.68114 * 22 21 20 24 24 C 1.38464 * 119.94816 * 359.70991 * 22 21 20 25 25 C 1.38203 * 119.97370 * 359.97438 * 24 22 21 26 26 H 1.07995 * 119.99862 * 179.97438 * 1 2 3 27 27 H 1.07997 * 120.00028 * 0.02562 * 1 2 3 28 28 H 1.07997 * 120.00028 * 179.97438 * 2 1 3 29 29 H 1.09003 * 109.47269 * 4.10660 * 3 2 1 30 30 H 1.09000 * 109.47439 * 244.10832 * 3 2 1 31 31 H 1.08999 * 109.46979 * 47.96631 * 5 4 3 32 32 H 1.09001 * 109.46547 * 167.96780 * 5 4 3 33 33 H 0.97003 * 119.99671 * 179.97438 * 9 8 6 34 34 H 1.09008 * 109.46857 * 306.04171 * 14 4 3 35 35 H 1.08995 * 109.47071 * 186.04826 * 14 4 3 36 36 H 0.97005 * 119.99174 * 0.02562 * 17 15 14 37 37 H 1.08995 * 109.47756 * 60.00020 * 18 17 15 38 38 H 1.09003 * 109.47001 * 299.99990 * 18 17 15 39 39 H 1.07996 * 119.98532 * 359.97438 * 20 19 18 40 40 H 1.08004 * 120.00990 * 180.25806 * 21 20 19 41 41 H 1.07999 * 120.01405 * 179.97438 * 24 22 21 42 42 H 1.08001 * 119.98434 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9809 1.3409 1.1468 5 6 2.2431 1.2546 2.4141 6 6 1.5163 2.5514 2.6615 7 1 1.6623 3.3881 1.9943 8 6 0.6649 2.6697 3.7395 9 7 0.4874 1.6510 4.5522 10 14 -0.2365 4.2769 4.0458 11 1 0.1324 5.2593 2.9951 12 1 -1.7016 4.0379 4.0070 13 1 0.1427 4.8110 5.3786 14 6 3.9869 0.2748 1.0496 15 6 4.8823 0.5353 -0.1341 16 8 4.7007 1.5131 -0.8283 17 7 5.8857 -0.3176 -0.4210 18 6 6.7564 -0.0640 -1.5714 19 6 7.7883 -1.1578 -1.6711 20 6 9.0020 -1.0234 -1.0230 21 6 9.9469 -2.0282 -1.1090 22 6 9.6823 -3.1646 -1.8544 23 9 10.6077 -4.1447 -1.9445 24 6 8.4685 -3.2956 -2.5078 25 6 7.5226 -2.2923 -2.4149 26 1 -0.5400 -0.9353 -0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8501 -0.9353 0.0004 29 1 1.3575 2.1323 0.0736 30 1 2.6338 1.3954 -0.9245 31 1 1.5223 0.4387 2.3601 32 1 2.9422 1.0686 3.2295 33 1 -0.1113 1.7343 5.3108 34 1 3.4873 -0.6857 0.9229 35 1 4.5851 0.2557 1.9605 36 1 6.0311 -1.0995 0.1345 37 1 7.2556 0.8965 -1.4445 38 1 6.1583 -0.0451 -2.4825 39 1 9.2102 -0.1346 -0.4459 40 1 10.8934 -1.9248 -0.5992 41 1 8.2612 -4.1814 -3.0898 42 1 6.5757 -2.3945 -2.9242 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292276539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:16:38 Heat of formation + Delta-G solvation = -46.492250 kcal Electronic energy + Delta-G solvation = -23960.684653 eV Core-core repulsion = 20241.088802 eV Total energy + Delta-G solvation = -3719.595851 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -49.92820 -41.02108 -40.02463 -38.34478 -35.79396 -34.80518 -33.71649 -32.20050 -32.12385 -29.95256 -28.35144 -26.74179 -25.60161 -24.03865 -22.86497 -22.37990 -21.62914 -20.42834 -18.69968 -18.44136 -17.91108 -17.47450 -17.26653 -17.00143 -16.61238 -16.43369 -16.05428 -15.86285 -15.68556 -15.27158 -14.97235 -14.60646 -14.56302 -14.43075 -14.17371 -13.91152 -13.52693 -13.27207 -13.13245 -12.75015 -12.69910 -12.60360 -12.53252 -12.20922 -12.13332 -12.01021 -11.96667 -11.43891 -10.79342 -10.55993 -10.16634 -10.09560 -10.00342 -9.66359 -8.90491 -8.15450 -6.23072 0.00668 0.25582 1.40562 1.42127 1.44475 1.55320 1.73395 2.12845 2.43814 2.70976 3.17131 3.25826 3.50115 3.61664 3.74275 3.96191 3.99030 4.08289 4.18878 4.22570 4.30863 4.46187 4.52317 4.64153 4.67551 4.74997 4.97502 4.97930 5.00041 5.14089 5.15128 5.21481 5.24242 5.37669 5.47639 5.50841 5.69446 5.71755 5.87213 5.92062 6.11881 6.38751 6.50037 6.73278 6.92324 7.35698 7.45550 8.94501 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.026264 B = 0.002447 C = 0.002384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1065.848152 B =11441.319175 C =11743.480741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.191 4.191 3 C 0.092 3.908 4 N -0.530 5.530 5 C 0.208 3.792 6 C -0.516 4.516 7 H 0.051 0.949 8 C 0.008 3.992 9 N -0.929 5.929 10 Si 0.958 3.042 11 H -0.270 1.270 12 H -0.278 1.278 13 H -0.278 1.278 14 C 0.031 3.969 15 C 0.523 3.477 16 O -0.559 6.559 17 N -0.716 5.716 18 C 0.166 3.834 19 C -0.116 4.116 20 C -0.071 4.071 21 C -0.158 4.158 22 C 0.086 3.914 23 F -0.149 7.149 24 C -0.157 4.157 25 C -0.070 4.070 26 H 0.110 0.890 27 H 0.085 0.915 28 H 0.115 0.885 29 H 0.054 0.946 30 H 0.085 0.915 31 H -0.010 1.010 32 H 0.005 0.995 33 H 0.263 0.737 34 H 0.075 0.925 35 H 0.105 0.895 36 H 0.413 0.587 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.148 0.852 40 H 0.150 0.850 41 H 0.151 0.849 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.411 -12.036 -13.496 24.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.211 4.211 3 C -0.036 4.036 4 N -0.253 5.253 5 C 0.082 3.918 6 C -0.554 4.554 7 H 0.069 0.931 8 C -0.190 4.190 9 N -0.570 5.570 10 Si 0.784 3.216 11 H -0.195 1.195 12 H -0.204 1.204 13 H -0.203 1.203 14 C -0.100 4.100 15 C 0.309 3.691 16 O -0.437 6.437 17 N -0.370 5.370 18 C 0.043 3.957 19 C -0.117 4.117 20 C -0.090 4.090 21 C -0.176 4.176 22 C 0.067 3.933 23 F -0.128 7.128 24 C -0.176 4.176 25 C -0.089 4.089 26 H 0.128 0.872 27 H 0.103 0.897 28 H 0.133 0.867 29 H 0.073 0.927 30 H 0.103 0.897 31 H 0.008 0.992 32 H 0.023 0.977 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.124 0.876 36 H 0.249 0.751 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.165 0.835 40 H 0.168 0.832 41 H 0.169 0.831 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 16.497 -10.937 -13.853 24.159 hybrid contribution -0.706 -0.587 0.788 1.210 sum 15.790 -11.524 -13.064 23.512 Atomic orbital electron populations 1.23873 0.96079 1.01809 0.99881 1.23602 0.97029 0.99589 1.00831 1.21240 0.94132 0.94151 0.94073 1.61977 1.15472 1.44489 1.03315 1.19442 0.91327 0.95720 0.85298 1.21406 1.24743 0.98862 1.10405 0.93114 1.25723 0.97576 0.99860 0.95819 1.70060 1.38573 1.32107 1.16266 0.85496 0.78237 0.79833 0.78043 1.19479 1.20362 1.20343 1.22043 0.95008 0.95409 0.97578 1.20679 0.80853 0.82121 0.85428 1.90644 1.71498 1.29626 1.51946 1.45909 1.31463 1.28163 1.31486 1.20111 0.89941 0.96269 0.89333 1.19883 0.95476 0.96143 1.00164 1.21169 0.91916 0.98776 0.97126 1.21356 1.02160 0.93082 1.01048 1.18063 0.87869 0.87027 1.00371 1.91488 1.65207 1.61192 1.94889 1.21363 0.92517 1.01792 1.01917 1.21166 0.99451 0.91524 0.96709 0.87161 0.89702 0.86742 0.92724 0.89735 0.99224 0.97703 0.92806 0.90737 0.87649 0.75073 0.90988 0.90703 0.83472 0.83214 0.83112 0.83272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.25 14.32 67.77 0.97 -5.28 16 2 C -0.19 -6.86 7.46 25.63 0.19 -6.67 16 3 C 0.09 3.78 5.31 85.56 0.45 4.24 16 4 N -0.53 -23.16 4.39 -909.95 -4.00 -27.16 16 5 C 0.21 10.77 4.60 85.56 0.39 11.16 16 6 C -0.52 -29.50 8.51 25.60 0.22 -29.28 16 7 H 0.05 2.98 7.68 -2.91 -0.02 2.95 16 8 C 0.01 0.47 5.46 84.65 0.46 0.93 16 9 N -0.93 -54.93 13.29 21.45 0.28 -54.65 16 10 Si 0.96 44.91 29.54 68.60 2.03 46.93 16 11 H -0.27 -12.50 7.11 99.48 0.71 -11.79 16 12 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 14 C 0.03 1.01 5.27 85.55 0.45 1.46 16 15 C 0.52 15.63 7.53 87.65 0.66 16.29 16 16 O -0.56 -21.39 14.32 -3.04 -0.04 -21.43 16 17 N -0.72 -14.25 5.55 -466.81 -2.59 -16.84 16 18 C 0.17 2.88 5.80 85.64 0.50 3.38 16 19 C -0.12 -1.56 5.25 -19.86 -0.10 -1.66 16 20 C -0.07 -0.90 9.70 22.26 0.22 -0.68 16 21 C -0.16 -2.05 10.03 22.31 0.22 -1.82 16 22 C 0.09 1.29 7.30 22.38 0.16 1.45 16 23 F -0.15 -2.60 17.27 44.97 0.78 -1.82 16 24 C -0.16 -1.98 10.03 22.32 0.22 -1.76 16 25 C -0.07 -0.84 9.70 22.26 0.22 -0.63 16 26 H 0.11 3.26 8.06 -2.91 -0.02 3.23 16 27 H 0.08 3.17 7.84 -2.91 -0.02 3.14 16 28 H 0.11 3.57 6.75 -2.91 -0.02 3.55 16 29 H 0.05 2.52 7.02 -2.39 -0.02 2.51 16 30 H 0.08 3.41 5.84 -2.39 -0.01 3.40 16 31 H -0.01 -0.55 6.77 -2.39 -0.02 -0.56 16 32 H 0.00 0.27 7.81 -2.39 -0.02 0.25 16 33 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 34 H 0.07 2.16 6.26 -2.38 -0.01 2.15 16 35 H 0.11 3.24 7.86 -2.39 -0.02 3.23 16 36 H 0.41 6.12 8.46 -92.70 -0.78 5.34 16 37 H 0.07 1.37 8.08 -2.39 -0.02 1.35 16 38 H 0.07 1.36 8.08 -2.39 -0.02 1.34 16 39 H 0.15 1.50 8.06 -2.91 -0.02 1.47 16 40 H 0.15 1.47 8.06 -2.91 -0.02 1.45 16 41 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 42 H 0.15 1.36 8.06 -2.91 -0.02 1.33 16 Total: -1.00 -70.03 358.99 1.94 -68.10 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: 0.25 Total: 15.74 kcal Atomic # 6 Polarization: -14.10 SS G_CDS: 5.24 Total: -8.87 kcal Atomic # 7 Polarization: -92.35 SS G_CDS: -6.30 Total: -98.65 kcal Atomic # 8 Polarization: -21.39 SS G_CDS: -0.04 Total: -21.43 kcal Atomic # 9 Polarization: -2.60 SS G_CDS: 0.78 Total: -1.82 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Total: -70.03 1.94 -68.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292276539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.604 kcal (2) G-P(sol) polarization free energy of solvation -70.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds