Wall clock time and date at job start Tue Mar 31 2020 08:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46941 * 2 1 4 4 C 1.50696 * 109.47011 * 179.97438 * 3 2 1 5 5 N 1.29947 * 126.28547 * 90.03158 * 4 3 2 6 6 O 1.21299 * 110.25112 * 179.97438 * 5 4 3 7 7 C 1.33640 * 109.81287 * 359.97438 * 6 5 4 8 8 C 1.50701 * 126.55211 * 180.02562 * 7 6 5 9 9 C 1.52994 * 109.47027 * 269.97766 * 8 7 6 10 10 C 1.53001 * 109.47341 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47286 * 179.97438 * 10 9 8 12 12 O 1.21296 * 120.00050 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99876 * 179.97438 * 11 10 9 14 14 C 1.37098 * 119.99957 * 179.97438 * 13 11 10 15 15 H 1.08000 * 119.99685 * 17.72772 * 14 13 11 16 16 C 1.38952 * 120.00068 * 197.72285 * 14 13 11 17 17 N 1.31410 * 119.99643 * 21.42463 * 16 14 13 18 18 Si 1.86796 * 119.99950 * 201.41841 * 16 14 13 19 19 H 1.48503 * 109.47447 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47175 * 120.00079 * 18 16 14 21 21 H 1.48495 * 109.47161 * 240.00324 * 18 16 14 22 22 C 1.46495 * 120.00147 * 0.02562 * 13 11 10 23 23 C 1.47202 * 109.47325 * 84.22756 * 22 13 11 24 24 N 9.01588 * 127.01176 * 298.82322 * 4 1 2 25 25 N 1.31134 * 106.89398 * 359.77146 * 7 6 5 26 26 H 1.09002 * 109.47065 * 299.99363 * 1 2 3 27 27 H 1.09003 * 109.47285 * 60.00025 * 1 2 3 28 28 H 1.09001 * 109.46558 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47174 * 240.00312 * 2 1 3 30 30 H 1.09003 * 109.47285 * 119.99975 * 2 1 3 31 31 H 1.08994 * 109.47201 * 300.00373 * 3 2 1 32 32 H 1.09006 * 109.46605 * 59.99935 * 3 2 1 33 33 H 1.08999 * 109.47079 * 29.97558 * 8 7 6 34 34 H 1.09002 * 109.47084 * 149.97427 * 8 7 6 35 35 H 1.09005 * 109.47365 * 300.00097 * 9 8 7 36 36 H 1.09002 * 109.47465 * 59.99894 * 9 8 7 37 37 H 1.08999 * 109.46844 * 299.99841 * 10 9 8 38 38 H 1.09002 * 109.47005 * 59.99517 * 10 9 8 39 39 H 0.97006 * 119.99235 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.47269 * 204.22849 * 22 13 11 41 41 H 1.09004 * 109.47102 * 324.22997 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 7 4.3164 1.4430 -1.0465 6 8 5.4821 1.4434 -0.7110 7 6 5.5696 1.4438 0.6226 8 6 6.8364 1.4449 1.4389 9 6 7.2657 0.0028 1.7159 10 6 8.5515 0.0039 2.5453 11 6 8.9740 -1.4166 2.8187 12 8 8.3117 -2.3391 2.3926 13 7 10.0879 -1.6619 3.5367 14 6 10.4721 -2.9541 3.7859 15 1 10.0715 -3.7610 3.1901 16 6 11.3768 -3.2257 4.8050 17 7 11.5453 -2.3624 5.7813 18 14 12.3534 -4.8180 4.7871 19 1 11.9826 -5.6127 3.5887 20 1 13.8050 -4.5080 4.7450 21 1 12.0493 -5.5990 6.0129 22 6 10.8876 -0.5477 4.0518 23 6 10.3182 -0.0836 5.3274 24 7 9.8820 0.2695 6.3075 25 7 4.3425 1.4487 1.0850 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 7.6236 1.9588 0.8872 34 1 6.6595 1.9593 2.3835 35 1 6.4785 -0.5111 2.2676 36 1 7.4426 -0.5115 0.7713 37 1 9.3389 0.5178 1.9940 38 1 8.3741 0.5181 3.4899 39 1 12.1767 -2.5523 6.4929 40 1 11.9134 -0.8800 4.2113 41 1 10.8784 0.2699 3.3309 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000299627256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:17 Heat of formation + Delta-G solvation = 47.540017 kcal Electronic energy + Delta-G solvation = -24037.578529 eV Core-core repulsion = 20341.980185 eV Total energy + Delta-G solvation = -3695.598344 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -45.62673 -38.98195 -36.71334 -36.11000 -35.49547 -34.49322 -34.07790 -32.15173 -31.69030 -28.45515 -28.03652 -27.38112 -24.97743 -23.79434 -22.78037 -21.94518 -20.83341 -19.11285 -18.07334 -17.92082 -17.49346 -16.56806 -16.25935 -15.60340 -15.32972 -15.05718 -14.77961 -14.43399 -14.07262 -13.81555 -13.55440 -13.04980 -12.99833 -12.81990 -12.47380 -12.37766 -12.12421 -12.08316 -11.83155 -11.79227 -11.57099 -11.41344 -11.29120 -11.18494 -11.14153 -11.11774 -10.96212 -10.70109 -10.54460 -10.39494 -10.30651 -9.89726 -9.29337 -8.63805 -8.07117 -6.53367 -4.02225 1.09142 2.15020 2.75930 3.06900 3.21175 3.27180 3.50577 3.54381 3.78332 3.92601 3.98419 4.10830 4.59435 4.67237 4.68179 4.79828 4.85972 4.95303 5.00304 5.11568 5.21863 5.27797 5.29402 5.40979 5.44166 5.52596 5.58692 5.65370 5.73915 5.77655 5.85062 5.89605 5.95674 5.95940 6.12516 6.30494 6.45365 6.48906 7.44989 7.87763 8.11685 8.25541 8.71430 8.98178 9.17378 9.71034 10.52893 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.021016 B = 0.002614 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.013536 B =10707.807831 C =11143.491227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C -0.027 4.027 4 C 0.169 3.831 5 N -0.389 5.389 6 O 0.075 5.925 7 C 0.196 3.804 8 C -0.031 4.031 9 C -0.096 4.096 10 C -0.135 4.135 11 C 0.455 3.545 12 O -0.574 6.574 13 N -0.444 5.444 14 C -0.313 4.313 15 H 0.108 0.892 16 C 0.031 3.969 17 N -0.877 5.877 18 Si 0.926 3.074 19 H -0.267 1.267 20 H -0.279 1.279 21 H -0.283 1.283 22 C 0.220 3.780 23 C 0.246 3.754 24 N -0.471 5.471 25 N -0.483 5.483 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.273 0.727 40 H 0.127 0.873 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.315 10.006 -10.808 17.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.159 4.159 3 C -0.066 4.066 4 C -0.104 4.104 5 N -0.098 5.098 6 O 0.017 5.983 7 C -0.025 4.025 8 C -0.070 4.070 9 C -0.135 4.135 10 C -0.175 4.175 11 C 0.244 3.756 12 O -0.456 6.456 13 N -0.165 5.165 14 C -0.440 4.440 15 H 0.126 0.874 16 C -0.172 4.172 17 N -0.516 5.516 18 Si 0.752 3.248 19 H -0.191 1.191 20 H -0.205 1.205 21 H -0.209 1.209 22 C 0.092 3.908 23 C -0.073 4.073 24 N -0.151 5.151 25 N -0.217 5.217 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.089 0.911 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.144 0.856 41 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -10.794 10.071 -9.923 17.788 hybrid contribution 0.991 -0.918 0.071 1.353 sum -9.803 9.153 -9.852 16.642 Atomic orbital electron populations 1.21745 0.94718 1.02228 1.02014 1.21506 0.96426 0.94876 1.03139 1.20016 0.82869 0.99243 1.04490 1.25859 1.00265 1.00575 0.83672 1.74606 0.89455 1.21735 1.24010 1.85283 1.22270 1.65722 1.24984 1.28926 0.97140 0.94413 0.81986 1.20437 0.87645 1.00903 0.98049 1.21274 0.97940 0.92513 1.01803 1.21581 0.97787 0.97029 1.01127 1.20081 0.81231 0.90182 0.84125 1.90558 1.53455 1.46318 1.55314 1.43667 1.20979 1.05735 1.46106 1.19751 1.24247 0.83879 1.16121 0.87396 1.25271 0.98699 0.99496 0.93761 1.69869 1.35044 1.37376 1.09355 0.85867 0.79142 0.81286 0.78476 1.19118 1.20454 1.20929 1.18748 0.97827 0.89052 0.85146 1.29046 0.92632 0.90731 0.94855 1.80622 1.10142 1.12606 1.11755 1.71923 0.99776 1.20690 1.29263 0.92324 0.92539 0.92188 0.91599 0.91064 0.89260 0.88674 0.87764 0.87102 0.90395 0.90397 0.89452 0.89899 0.91687 0.85566 0.89724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.91 37.16 0.37 -0.66 16 2 C -0.12 -1.09 5.92 -26.73 -0.16 -1.25 16 3 C -0.03 -0.26 5.84 -27.88 -0.16 -0.42 16 4 C 0.17 2.20 7.47 -156.38 -1.17 1.03 16 5 N -0.39 -5.43 12.16 30.90 0.38 -5.05 16 6 O 0.08 1.00 11.31 18.11 0.20 1.20 16 7 C 0.20 2.47 7.77 -13.06 -0.10 2.36 16 8 C -0.03 -0.32 5.84 -27.89 -0.16 -0.48 16 9 C -0.10 -1.31 4.49 -26.73 -0.12 -1.43 16 10 C -0.13 -1.97 4.30 -27.88 -0.12 -2.09 16 11 C 0.46 9.62 7.57 -10.99 -0.08 9.53 16 12 O -0.57 -14.39 15.63 5.54 0.09 -14.30 16 13 N -0.44 -9.86 2.60 -117.93 -0.31 -10.16 16 14 C -0.31 -7.84 9.32 -14.93 -0.14 -7.98 16 15 H 0.11 2.89 7.39 -52.49 -0.39 2.50 16 16 C 0.03 0.75 4.87 -17.47 -0.08 0.67 16 17 N -0.88 -21.63 9.48 55.50 0.53 -21.11 16 18 Si 0.93 19.28 29.60 -169.99 -5.03 14.25 16 19 H -0.27 -5.59 7.11 56.52 0.40 -5.19 16 20 H -0.28 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.28 -6.09 7.11 56.52 0.40 -5.68 16 22 C 0.22 4.06 4.91 -6.83 -0.03 4.02 16 23 C 0.25 5.14 12.93 -20.98 -0.27 4.87 16 24 N -0.47 -10.75 18.49 41.90 0.77 -9.98 16 25 N -0.48 -6.75 11.55 -9.87 -0.11 -6.87 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.10 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.08 1.25 8.10 -51.93 -0.42 0.83 16 36 H 0.08 1.11 8.10 -51.93 -0.42 0.69 16 37 H 0.09 0.97 7.41 -51.93 -0.39 0.58 16 38 H 0.08 1.18 7.51 -51.93 -0.39 0.79 16 39 H 0.27 6.52 8.31 -40.82 -0.34 6.18 16 40 H 0.13 2.42 6.46 -51.93 -0.34 2.09 16 41 H 0.08 1.12 6.68 -51.93 -0.35 0.77 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -32.22 356.51 -5.98 -38.19 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -5.63 Total: 0.25 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -2.24 Total: 8.19 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: 1.26 Total: -53.17 kcal Atomic # 8 Polarization: -13.39 SS G_CDS: 0.29 Total: -13.10 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -5.03 Total: 14.25 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.22 -5.98 -38.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299627256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.732 kcal (2) G-P(sol) polarization free energy of solvation -32.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.192 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds