Wall clock time and date at job start Tue Mar 31 2020 08:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53007 * 109.46941 * 2 1 4 4 C 1.50696 * 109.47011 * 179.97438 * 3 2 1 5 5 N 1.29947 * 126.28547 * 90.03158 * 4 3 2 6 6 O 1.21299 * 110.25112 * 179.97438 * 5 4 3 7 7 C 1.33640 * 109.81287 * 359.97438 * 6 5 4 8 8 C 1.50701 * 126.55211 * 180.02562 * 7 6 5 9 9 C 1.52994 * 109.47027 * 269.97766 * 8 7 6 10 10 C 1.53001 * 109.47341 * 180.02562 * 9 8 7 11 11 C 1.50696 * 109.47286 * 179.97438 * 10 9 8 12 12 O 1.21296 * 120.00050 * 359.97438 * 11 10 9 13 13 N 1.34778 * 119.99876 * 179.97438 * 11 10 9 14 14 C 1.37098 * 119.99957 * 179.97438 * 13 11 10 15 15 H 1.08000 * 119.99685 * 17.72772 * 14 13 11 16 16 C 1.38952 * 120.00068 * 197.72285 * 14 13 11 17 17 N 1.31410 * 119.99643 * 21.42463 * 16 14 13 18 18 Si 1.86796 * 119.99950 * 201.41841 * 16 14 13 19 19 H 1.48503 * 109.47447 * 0.02562 * 18 16 14 20 20 H 1.48497 * 109.47175 * 120.00079 * 18 16 14 21 21 H 1.48495 * 109.47161 * 240.00324 * 18 16 14 22 22 C 1.46495 * 120.00147 * 0.02562 * 13 11 10 23 23 C 1.47202 * 109.47325 * 84.22756 * 22 13 11 24 24 N 9.01588 * 127.01176 * 298.82322 * 4 1 2 25 25 N 1.31134 * 106.89398 * 359.77146 * 7 6 5 26 26 H 1.09002 * 109.47065 * 299.99363 * 1 2 3 27 27 H 1.09003 * 109.47285 * 60.00025 * 1 2 3 28 28 H 1.09001 * 109.46558 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47174 * 240.00312 * 2 1 3 30 30 H 1.09003 * 109.47285 * 119.99975 * 2 1 3 31 31 H 1.08994 * 109.47201 * 300.00373 * 3 2 1 32 32 H 1.09006 * 109.46605 * 59.99935 * 3 2 1 33 33 H 1.08999 * 109.47079 * 29.97558 * 8 7 6 34 34 H 1.09002 * 109.47084 * 149.97427 * 8 7 6 35 35 H 1.09005 * 109.47365 * 300.00097 * 9 8 7 36 36 H 1.09002 * 109.47465 * 59.99894 * 9 8 7 37 37 H 1.08999 * 109.46844 * 299.99841 * 10 9 8 38 38 H 1.09002 * 109.47005 * 59.99517 * 10 9 8 39 39 H 0.97006 * 119.99235 * 179.97438 * 17 16 14 40 40 H 1.08999 * 109.47269 * 204.22849 * 22 13 11 41 41 H 1.09004 * 109.47102 * 324.22997 * 22 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5469 1.4426 0.0006 5 7 4.3164 1.4430 -1.0465 6 8 5.4821 1.4434 -0.7110 7 6 5.5696 1.4438 0.6226 8 6 6.8364 1.4449 1.4389 9 6 7.2657 0.0028 1.7159 10 6 8.5515 0.0039 2.5453 11 6 8.9740 -1.4166 2.8187 12 8 8.3117 -2.3391 2.3926 13 7 10.0879 -1.6619 3.5367 14 6 10.4721 -2.9541 3.7859 15 1 10.0715 -3.7610 3.1901 16 6 11.3768 -3.2257 4.8050 17 7 11.5453 -2.3624 5.7813 18 14 12.3534 -4.8180 4.7871 19 1 11.9826 -5.6127 3.5887 20 1 13.8050 -4.5080 4.7450 21 1 12.0493 -5.5990 6.0129 22 6 10.8876 -0.5477 4.0518 23 6 10.3182 -0.0836 5.3274 24 7 9.8820 0.2695 6.3075 25 7 4.3425 1.4487 1.0850 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3632 -1.0277 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9564 -0.8899 32 1 1.6766 1.9563 0.8901 33 1 7.6236 1.9588 0.8872 34 1 6.6595 1.9593 2.3835 35 1 6.4785 -0.5111 2.2676 36 1 7.4426 -0.5115 0.7713 37 1 9.3389 0.5178 1.9940 38 1 8.3741 0.5181 3.4899 39 1 12.1767 -2.5523 6.4929 40 1 11.9134 -0.8800 4.2113 41 1 10.8784 0.2699 3.3309 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000299627256.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 08:53:16 Heat of formation + Delta-G solvation = 26.638751 kcal Electronic energy + Delta-G solvation = -24038.484876 eV Core-core repulsion = 20341.980185 eV Total energy + Delta-G solvation = -3696.504691 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -46.61951 -40.61505 -37.71638 -37.59206 -36.65616 -36.10905 -35.05479 -33.75799 -32.94434 -29.64824 -28.95264 -28.78924 -26.59592 -24.82949 -23.85516 -22.84398 -21.72075 -20.64459 -19.69111 -19.07300 -18.53160 -18.11584 -17.82251 -16.69153 -16.49680 -16.20558 -15.93337 -15.81413 -15.33756 -14.95642 -14.67542 -14.50008 -14.37298 -13.96425 -13.69988 -13.57543 -13.33719 -13.17238 -13.06291 -12.94423 -12.86572 -12.73891 -12.58193 -12.46073 -12.30360 -12.13657 -12.07076 -12.02214 -11.98578 -11.71978 -11.62667 -11.09109 -10.88209 -10.36750 -9.87468 -8.38122 -5.92539 0.11159 1.16885 1.39392 1.49557 1.61157 1.82430 1.90933 2.14916 2.35087 2.41056 2.64934 3.02132 3.04027 3.20824 3.69373 3.79563 3.90317 3.97442 4.01622 4.09675 4.13862 4.30120 4.47099 4.57204 4.60655 4.63594 4.72012 4.73837 4.81641 4.83919 4.91562 4.96797 5.00078 5.14000 5.17588 5.21689 5.34329 5.36273 5.51832 6.08943 6.44810 7.08858 7.13893 7.17817 7.42220 7.99558 8.65595 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.021016 B = 0.002614 C = 0.002512 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1332.013536 B =10707.807831 C =11143.491227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.117 4.117 3 C -0.027 4.027 4 C 0.164 3.836 5 N -0.409 5.409 6 O 0.070 5.930 7 C 0.197 3.803 8 C -0.021 4.021 9 C -0.089 4.089 10 C -0.123 4.123 11 C 0.446 3.554 12 O -0.624 6.624 13 N -0.459 5.459 14 C -0.339 4.339 15 H 0.078 0.922 16 C 0.005 3.995 17 N -0.892 5.892 18 Si 0.982 3.018 19 H -0.274 1.274 20 H -0.262 1.262 21 H -0.292 1.292 22 C 0.220 3.780 23 C 0.259 3.741 24 N -0.510 5.510 25 N -0.509 5.509 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.061 0.939 29 H 0.054 0.946 30 H 0.052 0.948 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.147 0.853 34 H 0.127 0.873 35 H 0.042 0.958 36 H 0.066 0.934 37 H 0.139 0.861 38 H 0.094 0.906 39 H 0.273 0.727 40 H 0.120 0.880 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.731 11.919 -11.476 18.708 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.156 4.156 3 C -0.066 4.066 4 C -0.109 4.109 5 N -0.119 5.119 6 O 0.014 5.986 7 C -0.023 4.023 8 C -0.059 4.059 9 C -0.128 4.128 10 C -0.162 4.162 11 C 0.237 3.763 12 O -0.510 6.510 13 N -0.179 5.179 14 C -0.466 4.466 15 H 0.096 0.904 16 C -0.197 4.197 17 N -0.531 5.531 18 Si 0.807 3.193 19 H -0.198 1.198 20 H -0.187 1.187 21 H -0.218 1.218 22 C 0.093 3.907 23 C -0.059 4.059 24 N -0.190 5.190 25 N -0.243 5.243 26 H 0.085 0.915 27 H 0.087 0.913 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.124 0.876 32 H 0.125 0.875 33 H 0.165 0.835 34 H 0.145 0.855 35 H 0.061 0.939 36 H 0.085 0.915 37 H 0.157 0.843 38 H 0.113 0.887 39 H 0.083 0.917 40 H 0.138 0.862 41 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -10.185 12.013 -10.584 18.975 hybrid contribution 0.767 -1.567 0.275 1.766 sum -9.418 10.446 -10.309 17.438 Atomic orbital electron populations 1.21717 0.92755 1.02711 1.03017 1.21464 0.98070 0.94404 1.01694 1.20207 0.80916 0.99621 1.05846 1.26471 1.01614 0.99584 0.83233 1.74588 0.89817 1.22859 1.24661 1.85251 1.22117 1.65924 1.25332 1.29427 0.97668 0.93298 0.81908 1.20535 0.87664 0.98643 0.99102 1.21117 0.96582 0.94598 1.00531 1.21593 0.99481 0.92631 1.02544 1.21271 0.80149 0.92517 0.82380 1.90531 1.54841 1.48757 1.56894 1.43861 1.21987 1.05712 1.46340 1.19588 1.25420 0.85087 1.16532 0.90439 1.25813 0.98797 1.01939 0.93121 1.69944 1.35234 1.38467 1.09458 0.85044 0.78709 0.78098 0.77450 1.19812 1.18661 1.21823 1.19140 0.96441 0.89685 0.85420 1.29542 0.91700 0.89685 0.94947 1.80631 1.11403 1.14077 1.12913 1.71941 1.00666 1.21700 1.30024 0.91538 0.91298 0.91999 0.92673 0.92888 0.87606 0.87527 0.83502 0.85536 0.93922 0.91487 0.84293 0.88749 0.91674 0.86192 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.91 71.98 0.71 -1.09 16 2 C -0.12 -2.10 5.92 30.60 0.18 -1.92 16 3 C -0.03 -0.49 5.84 29.85 0.17 -0.32 16 4 C 0.16 4.18 7.47 138.46 1.03 5.22 16 5 N -0.41 -11.19 12.16 -60.33 -0.73 -11.92 16 6 O 0.07 1.78 11.31 74.87 0.85 2.63 16 7 C 0.20 4.69 7.77 88.38 0.69 5.38 16 8 C -0.02 -0.36 5.84 29.85 0.17 -0.18 16 9 C -0.09 -2.28 4.49 30.59 0.14 -2.14 16 10 C -0.12 -3.21 4.30 29.85 0.13 -3.08 16 11 C 0.45 18.53 7.57 87.66 0.66 19.20 16 12 O -0.62 -32.14 15.63 -3.08 -0.05 -32.19 16 13 N -0.46 -19.97 2.60 -645.42 -1.68 -21.65 16 14 C -0.34 -17.19 9.32 84.04 0.78 -16.40 16 15 H 0.08 4.33 7.39 -2.91 -0.02 4.31 16 16 C 0.01 0.26 4.87 84.93 0.41 0.67 16 17 N -0.89 -43.46 9.48 21.66 0.21 -43.25 16 18 Si 0.98 39.60 29.60 68.60 2.03 41.63 16 19 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 20 H -0.26 -9.81 7.11 99.48 0.71 -9.11 16 21 H -0.29 -12.12 7.11 99.48 0.71 -11.41 16 22 C 0.22 7.53 4.91 84.58 0.42 7.94 16 23 C 0.26 10.36 12.93 89.52 1.16 11.52 16 24 N -0.51 -22.65 18.49 19.93 0.37 -22.28 16 25 N -0.51 -13.92 11.55 -303.21 -3.50 -17.42 16 26 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.11 1.66 8.14 -2.38 -0.02 1.64 16 33 H 0.15 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 35 H 0.04 1.38 8.10 -2.38 -0.02 1.36 16 36 H 0.07 1.86 8.10 -2.39 -0.02 1.84 16 37 H 0.14 2.25 7.41 -2.39 -0.02 2.23 16 38 H 0.09 2.35 7.51 -2.39 -0.02 2.33 16 39 H 0.27 12.87 8.31 -92.70 -0.77 12.10 16 40 H 0.12 4.35 6.46 -2.39 -0.02 4.33 16 41 H 0.15 3.14 6.68 -2.39 -0.02 3.12 16 Total: -1.00 -73.71 356.51 5.20 -68.51 By element: Atomic # 1 Polarization: 10.11 SS G_CDS: 1.05 Total: 11.16 kcal Atomic # 6 Polarization: 18.13 SS G_CDS: 6.66 Total: 24.79 kcal Atomic # 7 Polarization: -111.19 SS G_CDS: -5.34 Total: -116.53 kcal Atomic # 8 Polarization: -30.36 SS G_CDS: 0.80 Total: -29.56 kcal Atomic # 14 Polarization: 39.60 SS G_CDS: 2.03 Total: 41.63 kcal Total: -73.71 5.20 -68.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000299627256.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.146 kcal (2) G-P(sol) polarization free energy of solvation -73.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.639 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds