Wall clock time and date at job start Tue Mar 31 2020 09:02:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52991 * 109.47501 * 2 1 4 4 C 1.50705 * 109.47002 * 239.99928 * 2 1 3 5 5 H 1.07999 * 119.99650 * 238.32182 * 4 2 1 6 6 C 1.37874 * 119.99757 * 58.32025 * 4 2 1 7 7 N 1.31509 * 120.00134 * 2.54435 * 6 4 2 8 8 Si 1.86801 * 119.99787 * 182.54121 * 6 4 2 9 9 H 1.48496 * 109.47299 * 94.99573 * 8 6 4 10 10 H 1.48494 * 109.47178 * 214.99634 * 8 6 4 11 11 H 1.48503 * 109.47261 * 334.99723 * 8 6 4 12 12 C 1.53001 * 109.46867 * 120.00337 * 2 1 3 13 13 N 1.46503 * 109.47122 * 299.99702 * 12 2 1 14 14 C 1.34773 * 120.00082 * 180.02562 * 13 12 2 15 15 O 1.21586 * 119.99979 * 5.03340 * 14 13 12 16 16 N 1.34780 * 119.99848 * 185.03377 * 14 13 12 17 17 C 1.46535 * 124.98027 * 354.90019 * 16 14 13 18 18 C 1.53735 * 105.19973 * 180.02562 * 17 16 14 19 19 C 1.51220 * 104.59016 * 359.97438 * 18 17 16 20 20 C 1.38209 * 130.93812 * 179.97438 * 19 18 17 21 21 C 1.38187 * 120.18327 * 179.73355 * 20 19 18 22 22 C 1.38519 * 119.80009 * 0.54891 * 21 20 19 23 23 F 1.35103 * 119.91748 * 179.74772 * 22 21 20 24 24 C 1.38061 * 120.16661 * 359.47410 * 22 21 20 25 25 C 1.38575 * 108.55491 * 0.02562 * 19 18 17 26 26 H 1.08996 * 109.46801 * 295.03577 * 1 2 3 27 27 H 1.08997 * 109.46878 * 55.03804 * 1 2 3 28 28 H 1.09001 * 109.47531 * 175.03574 * 1 2 3 29 29 H 1.08995 * 109.47659 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.46978 * 300.00099 * 3 2 1 31 31 H 1.09005 * 109.46973 * 59.99856 * 3 2 1 32 32 H 0.97006 * 119.99810 * 179.97438 * 7 6 4 33 33 H 1.09001 * 109.46755 * 179.97438 * 12 2 1 34 34 H 1.09002 * 109.47655 * 59.99939 * 12 2 1 35 35 H 0.97005 * 119.99640 * 359.97438 * 13 12 2 36 36 H 1.09000 * 110.29449 * 61.11155 * 17 16 14 37 37 H 1.09003 * 110.29174 * 298.97635 * 17 16 14 38 38 H 1.09001 * 110.40741 * 241.21931 * 18 17 16 39 39 H 1.08995 * 110.41440 * 118.77664 * 18 17 16 40 40 H 1.07997 * 119.90753 * 0.03076 * 20 19 18 41 41 H 1.08004 * 120.09867 * 180.27576 * 21 20 19 42 42 H 1.08006 * 119.87003 * 180.27338 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6754 -1.5725 -1.1316 6 6 1.6709 -0.2599 -2.4824 7 7 0.9290 0.8191 -2.6041 8 14 2.2351 -1.1822 -4.0058 9 1 1.1754 -2.1318 -4.4304 10 1 2.5001 -0.2145 -5.1004 11 1 3.4784 -1.9335 -3.6975 12 6 2.0400 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8776 -0.4909 3.6695 15 8 2.6502 -1.4229 3.7827 16 7 1.3471 0.0819 4.7681 17 6 0.4926 1.2723 4.7653 18 6 0.1507 1.5265 6.2425 19 6 0.8614 0.4229 6.9933 20 6 0.9197 0.1390 8.3447 21 6 1.6439 -0.9481 8.7956 22 6 2.3218 -1.7473 7.8897 23 9 3.0347 -2.8078 8.3284 24 6 2.2660 -1.4663 6.5392 25 6 1.5317 -0.3726 6.0778 26 1 -0.3633 0.4349 0.9311 27 1 -0.3633 0.5889 -0.8422 28 1 -0.3634 -1.0238 -0.0889 29 1 3.1301 1.4424 0.0005 30 1 1.6768 1.9562 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 0.6750 1.1362 -3.4850 33 1 3.1300 -0.7217 1.2490 34 1 1.6767 -1.7490 1.2492 35 1 0.9943 0.7582 2.3564 36 1 -0.4164 1.0839 4.1941 37 1 1.0317 2.1237 4.3497 38 1 -0.9258 1.4611 6.4002 39 1 0.5232 2.5015 6.5566 40 1 0.3939 0.7657 9.0498 41 1 1.6849 -1.1713 9.8515 42 1 2.7928 -2.0953 5.8367 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335589418.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:29 Heat of formation + Delta-G solvation = -45.156316 kcal Electronic energy + Delta-G solvation = -25046.680634 eV Core-core repulsion = 21327.142714 eV Total energy + Delta-G solvation = -3719.537920 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 306.148 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -48.93212 -41.23126 -38.95642 -36.60981 -36.13565 -33.44067 -32.35824 -31.10510 -29.80749 -28.83327 -25.80178 -25.77328 -25.08526 -23.45041 -23.25277 -21.61477 -20.23141 -18.97936 -18.24932 -17.34475 -16.50214 -16.25200 -15.98798 -15.76371 -15.55256 -15.15726 -14.78402 -14.67300 -14.00167 -13.90087 -13.62128 -13.30530 -13.09913 -12.90755 -12.57117 -12.39733 -12.25004 -12.04606 -11.98609 -11.47791 -11.33556 -11.26110 -10.92512 -10.71835 -10.46650 -10.27823 -10.26886 -9.94560 -9.70535 -9.41091 -8.86558 -8.85185 -8.61529 -8.41743 -7.84899 -6.07467 -4.16991 1.00718 1.13663 2.47011 3.16311 3.25546 3.33201 3.37420 3.59933 3.92344 4.23086 4.27175 4.34683 4.43433 4.80402 4.82245 4.90602 5.02156 5.20135 5.27484 5.37411 5.49885 5.58770 5.78902 5.91583 6.05832 6.09705 6.23882 6.24147 6.25603 6.42299 6.66567 6.73516 6.78498 6.87917 6.90935 6.94827 7.10804 7.28632 7.48955 7.64863 7.93289 8.01603 8.12009 8.32203 8.67981 8.83761 9.49089 10.94548 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.027858 B = 0.003073 C = 0.002827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.853265 B = 9110.223856 C = 9901.307184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.057 3.943 3 C -0.130 4.130 4 C -0.508 4.508 5 H 0.059 0.941 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.146 3.854 13 N -0.721 5.721 14 C 0.707 3.293 15 O -0.573 6.573 16 N -0.570 5.570 17 C 0.095 3.905 18 C -0.078 4.078 19 C -0.161 4.161 20 C -0.048 4.048 21 C -0.187 4.187 22 C 0.128 3.872 23 F -0.138 7.138 24 C -0.176 4.176 25 C 0.210 3.790 26 H 0.004 0.996 27 H 0.084 0.916 28 H 0.029 0.971 29 H 0.027 0.973 30 H 0.086 0.914 31 H 0.004 0.996 32 H 0.260 0.740 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.397 0.603 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.134 0.866 41 H 0.136 0.864 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.840 3.974 19.391 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.056 3.944 3 C -0.188 4.188 4 C -0.546 4.546 5 H 0.077 0.923 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.024 3.976 13 N -0.374 5.374 14 C 0.409 3.591 15 O -0.450 6.450 16 N -0.296 5.296 17 C -0.027 4.027 18 C -0.116 4.116 19 C -0.164 4.164 20 C -0.066 4.066 21 C -0.207 4.207 22 C 0.108 3.892 23 F -0.116 7.116 24 C -0.198 4.198 25 C 0.111 3.889 26 H 0.023 0.977 27 H 0.103 0.897 28 H 0.048 0.952 29 H 0.047 0.953 30 H 0.105 0.895 31 H 0.023 0.977 32 H 0.070 0.930 33 H 0.076 0.924 34 H 0.074 0.926 35 H 0.232 0.768 36 H 0.103 0.897 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.152 0.848 41 H 0.154 0.846 42 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -3.300 3.341 19.039 19.610 hybrid contribution 0.151 -0.294 -0.930 0.987 sum -3.150 3.047 18.109 18.632 Atomic orbital electron populations 1.21819 0.97668 1.00088 0.99084 1.18374 0.92842 0.92797 0.90401 1.21836 0.98698 0.98270 0.99958 1.20975 1.30413 1.13446 0.89790 0.92305 1.24869 0.94849 0.94829 0.98866 1.69812 1.37012 1.22309 1.23292 0.86542 0.79107 0.79614 0.82547 1.20734 1.21242 1.19816 1.21729 0.98323 0.95523 0.82024 1.45596 1.54922 1.32781 1.04149 1.15787 0.80890 0.82353 0.80076 1.90884 1.38060 1.30883 1.85151 1.45185 1.50786 1.29716 1.03872 1.22195 0.94887 0.87308 0.98327 1.21023 1.01121 0.97704 0.91707 1.20018 1.03668 0.99484 0.93275 1.20094 0.97309 0.95988 0.93238 1.20908 1.02425 0.97638 0.99774 1.17267 0.94057 0.85988 0.91918 1.91502 1.76080 1.54133 1.89912 1.20827 1.04401 0.99915 0.94643 1.17781 0.94426 0.93266 0.83384 0.97708 0.89741 0.95160 0.95335 0.89533 0.97715 0.92980 0.92441 0.92577 0.76758 0.89660 0.89707 0.88956 0.88974 0.84828 0.84605 0.82838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.81 8.05 37.16 0.30 -2.51 16 2 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 3 C -0.13 -2.84 8.09 37.15 0.30 -2.54 16 4 C -0.51 -13.07 8.01 -34.44 -0.28 -13.35 16 5 H 0.06 1.54 7.74 -52.49 -0.41 1.13 16 6 C 0.07 1.74 5.14 -17.82 -0.09 1.65 16 7 N -0.89 -23.15 9.41 55.43 0.52 -22.63 16 8 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 12 C 0.15 3.06 4.51 -4.04 -0.02 3.05 16 13 N -0.72 -12.75 4.87 -65.22 -0.32 -13.07 16 14 C 0.71 12.82 8.42 -86.92 -0.73 12.08 16 15 O -0.57 -12.31 14.54 5.29 0.08 -12.23 16 16 N -0.57 -8.27 3.13 -118.26 -0.37 -8.64 16 17 C 0.10 0.95 6.34 -3.64 -0.02 0.92 16 18 C -0.08 -0.61 6.93 -27.25 -0.19 -0.80 16 19 C -0.16 -1.70 6.23 -104.25 -0.65 -2.35 16 20 C -0.05 -0.43 10.03 -39.61 -0.40 -0.82 16 21 C -0.19 -1.89 10.04 -39.50 -0.40 -2.29 16 22 C 0.13 1.66 7.28 -39.54 -0.29 1.37 16 23 F -0.14 -1.87 17.26 2.25 0.04 -1.83 16 24 C -0.18 -2.65 9.43 -39.14 -0.37 -3.02 16 25 C 0.21 2.96 6.62 -83.57 -0.55 2.41 16 26 H 0.00 0.08 6.74 -51.93 -0.35 -0.27 16 27 H 0.08 2.03 6.19 -51.93 -0.32 1.71 16 28 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 2.10 6.11 -51.93 -0.32 1.78 16 31 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 32 H 0.26 6.57 8.31 -40.82 -0.34 6.23 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.40 6.22 5.09 -40.82 -0.21 6.01 16 36 H 0.09 0.76 8.13 -51.93 -0.42 0.34 16 37 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.13 0.77 8.06 -52.49 -0.42 0.34 16 41 H 0.14 1.04 8.06 -52.48 -0.42 0.62 16 42 H 0.15 2.67 6.29 -52.48 -0.33 2.34 16 LS Contribution 340.27 15.07 5.13 5.13 Total: -1.00 -29.22 340.27 -9.06 -38.27 By element: Atomic # 1 Polarization: 10.20 SS G_CDS: -5.65 Total: 4.54 kcal Atomic # 6 Polarization: -1.54 SS G_CDS: -3.46 Total: -5.00 kcal Atomic # 7 Polarization: -44.18 SS G_CDS: -0.17 Total: -44.34 kcal Atomic # 8 Polarization: -12.31 SS G_CDS: 0.08 Total: -12.23 kcal Atomic # 9 Polarization: -1.87 SS G_CDS: 0.04 Total: -1.83 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -29.22 -9.06 -38.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335589418.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.883 kcal (2) G-P(sol) polarization free energy of solvation -29.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds