Wall clock time and date at job start Tue Mar 31 2020 09:02:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52993 * 109.47039 * 2 1 4 4 C 1.50703 * 109.47127 * 239.99685 * 2 1 3 5 5 H 1.07995 * 119.99722 * 239.99807 * 4 2 1 6 6 C 1.37880 * 120.00022 * 60.00218 * 4 2 1 7 7 N 1.31518 * 119.99682 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 119.99925 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47321 * 90.00212 * 8 6 4 10 10 H 1.48509 * 109.46811 * 209.99889 * 8 6 4 11 11 H 1.48495 * 109.47242 * 329.99597 * 8 6 4 12 12 C 1.52998 * 109.47028 * 119.99946 * 2 1 3 13 13 N 1.46505 * 109.46983 * 299.99771 * 12 2 1 14 14 C 1.34780 * 119.99700 * 179.97438 * 13 12 2 15 15 O 1.21586 * 120.00300 * 0.02562 * 14 13 12 16 16 N 1.34781 * 119.99481 * 180.02562 * 14 13 12 17 17 C 1.45122 * 118.76095 * 0.02562 * 16 14 13 18 18 C 1.54804 * 109.53805 * 269.29053 * 17 16 14 19 19 O 1.38020 * 109.47727 * 292.11127 * 18 17 16 20 20 C 1.42154 * 119.43489 * 63.42532 * 19 18 17 21 21 C 1.51533 * 108.76171 * 272.77531 * 20 19 18 22 22 F 1.39901 * 109.44961 * 211.43484 * 21 20 19 23 23 F 1.39895 * 109.45202 * 331.36913 * 21 20 19 24 24 C 1.47507 * 118.75321 * 180.02562 * 16 14 13 25 25 H 1.08995 * 109.46973 * 299.99914 * 1 2 3 26 26 H 1.09002 * 109.46898 * 60.00607 * 1 2 3 27 27 H 1.09000 * 109.46941 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47373 * 179.97438 * 3 2 1 29 29 H 1.09006 * 109.47440 * 299.99750 * 3 2 1 30 30 H 1.08998 * 109.47408 * 59.99754 * 3 2 1 31 31 H 0.96998 * 119.99437 * 180.02562 * 7 6 4 32 32 H 1.08995 * 109.47302 * 180.02562 * 12 2 1 33 33 H 1.09000 * 109.47431 * 60.00090 * 12 2 1 34 34 H 0.96993 * 119.99964 * 0.02562 * 13 12 2 35 35 H 1.09001 * 109.45862 * 149.26558 * 17 16 14 36 36 H 1.09002 * 109.45748 * 29.30984 * 17 16 14 37 37 H 1.09002 * 109.47055 * 172.10844 * 18 17 16 38 38 H 1.09001 * 109.46669 * 52.11194 * 18 17 16 39 39 H 1.09002 * 109.58624 * 32.56555 * 20 19 18 40 40 H 1.09001 * 109.58532 * 152.99168 * 20 19 18 41 41 H 1.09002 * 109.16850 * 17.97386 * 24 16 14 42 42 H 1.09003 * 109.16574 * 258.77008 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2395 -2.4828 7 7 0.9428 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0079 9 1 1.3449 -2.1617 -4.4123 10 1 2.4874 -0.1403 -5.1120 11 1 3.6309 -1.7567 -3.7119 12 6 2.0400 -0.7212 1.2492 13 7 1.5517 -0.0305 2.4454 14 6 1.8769 -0.4913 3.6695 15 8 2.5758 -1.4799 3.7811 16 7 1.4272 0.1438 4.7700 17 6 0.5943 1.3208 4.6055 18 6 1.4868 2.5851 4.5650 19 8 2.0593 2.7841 5.8050 20 6 2.9577 1.8123 6.3237 21 6 2.1602 0.7555 7.0609 22 9 2.9243 0.2476 8.1170 23 9 0.9873 1.3257 7.5670 24 6 1.8002 -0.3837 6.0960 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 0.7082 1.1607 -3.4844 32 1 3.1300 -0.7209 1.2495 33 1 1.6767 -1.7489 1.2493 34 1 0.9938 0.7579 2.3564 35 1 -0.1008 1.3936 5.4419 36 1 0.0340 1.2419 3.6738 37 1 0.8787 3.4508 4.3023 38 1 2.2711 2.4523 3.8198 39 1 3.5084 1.3496 5.5047 40 1 3.6552 2.2900 7.0119 41 1 2.6587 -1.0468 5.9888 42 1 0.9622 -0.9479 6.5054 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000335590386.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:02:34 Heat of formation + Delta-G solvation = -159.807497 kcal Electronic energy + Delta-G solvation = -27188.094630 eV Core-core repulsion = 23032.815836 eV Total energy + Delta-G solvation = -4155.278793 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 306.154 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.24981 -47.24326 -40.62843 -38.79948 -36.66377 -35.33379 -33.65848 -32.21149 -30.79337 -28.46735 -27.47135 -25.80597 -25.61758 -24.82797 -23.19171 -21.93670 -19.85608 -19.11000 -18.39976 -17.90931 -17.81751 -17.19881 -16.18280 -16.04423 -15.72622 -15.45863 -15.10227 -14.78797 -14.50844 -14.10610 -14.00764 -13.68628 -13.66694 -13.50396 -13.14491 -12.94695 -12.59177 -12.38005 -12.13467 -12.05017 -11.78620 -11.46586 -11.26064 -11.10335 -10.91904 -10.73484 -10.46212 -10.26400 -10.04577 -9.95538 -9.71319 -9.39715 -8.98783 -8.86326 -8.48770 -8.34481 -6.07420 -4.17473 2.44448 3.12108 3.25282 3.27082 3.32592 3.36497 3.49193 3.68366 4.03433 4.16556 4.36643 4.38763 4.66781 4.81114 4.90474 4.99837 5.09351 5.19775 5.27929 5.36662 5.48365 5.58410 6.04411 6.22358 6.26522 6.40494 6.66146 6.73004 6.75545 6.93065 6.94616 6.97600 7.05567 7.28798 7.48412 7.64291 7.94030 8.03758 8.16895 8.32810 8.74056 8.83723 9.48701 10.94082 Molecular weight = 306.15amu Principal moments of inertia in cm(-1) A = 0.031715 B = 0.003446 C = 0.003300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.658447 B = 8123.170372 C = 8481.703718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.056 3.944 3 C -0.129 4.129 4 C -0.506 4.506 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.274 1.274 12 C 0.147 3.853 13 N -0.727 5.727 14 C 0.697 3.303 15 O -0.590 6.590 16 N -0.632 5.632 17 C 0.060 3.940 18 C 0.047 3.953 19 O -0.363 6.363 20 C 0.036 3.964 21 C 0.252 3.748 22 F -0.190 7.190 23 F -0.186 7.186 24 C 0.093 3.907 25 H 0.003 0.997 26 H 0.086 0.914 27 H 0.027 0.973 28 H 0.027 0.973 29 H 0.086 0.914 30 H 0.004 0.996 31 H 0.260 0.740 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.395 0.605 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.118 0.882 38 H 0.056 0.944 39 H 0.087 0.913 40 H 0.116 0.884 41 H 0.124 0.876 42 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.497 4.514 16.086 16.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.055 3.945 3 C -0.187 4.187 4 C -0.545 4.545 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.199 1.199 12 C 0.025 3.975 13 N -0.383 5.383 14 C 0.399 3.601 15 O -0.468 6.468 16 N -0.371 5.371 17 C -0.064 4.064 18 C -0.032 4.032 19 O -0.280 6.280 20 C -0.042 4.042 21 C 0.214 3.786 22 F -0.171 7.171 23 F -0.167 7.167 24 C -0.032 4.032 25 H 0.022 0.978 26 H 0.105 0.895 27 H 0.046 0.954 28 H 0.046 0.954 29 H 0.105 0.895 30 H 0.023 0.977 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.073 0.927 34 H 0.232 0.768 35 H 0.114 0.886 36 H 0.111 0.889 37 H 0.135 0.865 38 H 0.074 0.926 39 H 0.105 0.895 40 H 0.134 0.866 41 H 0.142 0.858 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -0.122 4.044 16.100 16.601 hybrid contribution -0.073 -0.378 -0.859 0.942 sum -0.195 3.666 15.241 15.677 Atomic orbital electron populations 1.21828 0.97744 0.99220 0.99947 1.18374 0.92811 0.92805 0.90500 1.21820 0.98613 0.98292 0.99959 1.20961 1.31588 1.12143 0.89786 0.92383 1.24871 0.94825 0.94890 0.98859 1.69797 1.36620 1.22717 1.23288 0.86562 0.79347 0.79386 0.82530 1.20701 1.21255 1.19885 1.21676 0.98032 0.95587 0.82252 1.45730 1.55098 1.33059 1.04411 1.16048 0.80403 0.82945 0.80742 1.90897 1.42947 1.27410 1.85593 1.46873 1.55035 1.30763 1.04436 1.22620 0.94185 0.85010 1.04619 1.22880 0.96711 0.98503 0.85081 1.86374 1.60965 1.45119 1.35531 1.23239 0.91721 0.90015 0.99259 1.21994 0.79560 0.93228 0.83818 1.93036 1.75728 1.88522 1.59788 1.93029 1.48980 1.86114 1.88595 1.22427 1.04907 0.94031 0.81793 0.97775 0.89522 0.95382 0.95393 0.89535 0.97749 0.92969 0.92718 0.92729 0.76778 0.88640 0.88880 0.86451 0.92570 0.89455 0.86617 0.85822 0.89390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.79 8.08 37.16 0.30 -2.49 16 2 C 0.06 1.24 0.50 -155.66 -0.08 1.16 16 3 C -0.13 -2.75 8.08 37.15 0.30 -2.45 16 4 C -0.51 -12.84 8.01 -34.44 -0.28 -13.12 16 5 H 0.06 1.49 7.74 -52.49 -0.41 1.09 16 6 C 0.07 1.71 5.15 -17.82 -0.09 1.62 16 7 N -0.89 -22.88 9.35 55.43 0.52 -22.36 16 8 Si 0.89 20.26 29.54 -169.99 -5.02 15.24 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 12 C 0.15 3.00 4.50 -4.04 -0.02 2.98 16 13 N -0.73 -12.25 4.80 -65.22 -0.31 -12.56 16 14 C 0.70 11.64 8.23 -86.91 -0.72 10.92 16 15 O -0.59 -11.93 15.64 5.29 0.08 -11.85 16 16 N -0.63 -8.11 2.19 -178.20 -0.39 -8.50 16 17 C 0.06 0.62 5.24 -3.83 -0.02 0.60 16 18 C 0.05 0.46 6.82 38.11 0.26 0.72 16 19 O -0.36 -3.97 9.26 -26.55 -0.25 -4.22 16 20 C 0.04 0.36 6.07 36.42 0.22 0.58 16 21 C 0.25 2.73 2.08 -27.18 -0.06 2.67 16 22 F -0.19 -2.12 17.02 2.25 0.04 -2.08 16 23 F -0.19 -2.22 15.14 2.25 0.03 -2.18 16 24 C 0.09 1.08 5.64 -3.19 -0.02 1.06 16 25 H 0.00 0.06 6.86 -51.93 -0.36 -0.29 16 26 H 0.09 2.08 6.07 -51.93 -0.32 1.76 16 27 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.09 2.06 6.07 -51.93 -0.32 1.75 16 30 H 0.00 0.07 6.86 -51.93 -0.36 -0.29 16 31 H 0.26 6.52 8.31 -40.82 -0.34 6.18 16 32 H 0.05 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.40 5.94 3.76 -40.82 -0.15 5.79 16 35 H 0.10 0.93 7.13 -51.93 -0.37 0.56 16 36 H 0.09 0.93 6.17 -51.93 -0.32 0.61 16 37 H 0.12 0.91 8.14 -51.93 -0.42 0.49 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 0.93 7.40 -51.93 -0.38 0.54 16 40 H 0.12 0.97 8.09 -51.93 -0.42 0.55 16 41 H 0.12 1.54 6.99 -51.93 -0.36 1.18 16 42 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 331.10 15.07 4.99 4.99 Total: -1.00 -28.32 331.10 -6.36 -34.68 By element: Atomic # 1 Polarization: 10.43 SS G_CDS: -5.85 Total: 4.57 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: -0.19 Total: 4.26 kcal Atomic # 7 Polarization: -43.24 SS G_CDS: -0.18 Total: -43.42 kcal Atomic # 8 Polarization: -15.90 SS G_CDS: -0.16 Total: -16.06 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.07 Total: -4.26 kcal Atomic # 14 Polarization: 20.26 SS G_CDS: -5.02 Total: 15.24 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.32 -6.36 -34.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000335590386.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.128 kcal (2) G-P(sol) polarization free energy of solvation -28.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -159.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds